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LotjaGi4g1v0396700.1

Overview

Field Value
Gene ID LotjaGi4g1v0396700
Transcript ID LotjaGi4g1v0396700.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G39910.1 ubiquitin-specific protease 3; Swiss-Prot: sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3; TrEMBL-Plants: tr|A0A072TTI7|A0A072TTI7_MEDTR Ubiquitin carboxyl-terminal hydrolase; Found in the gene: LotjaGi4g1v0396700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:77457181..77466128) extracted from Lotus japonicus Gifu genome v1.2.

ATATATAGATAGATCCATAGACGTACCTATCAATAATATTTTCTAACATAGCCATAAATGCAACTTATTTTGGTCCACTA ATATTGTTGTGGAAAAAAAAACAAAATAAAAATGTCAAAGATGCACACAAATTAAAAAGAACCGTTATTTATTATTGATT TTTCTCAAAATTTCCGTCAACGAAACCCTTATTTCATTTCCAGCGATTACATTAGAAAACCCAGAAACCATAGAAGAAGA TTCACTCTGCAACTAACCCTAACGATCCAAACAACCATTGAGCATTGAGCATTTCATGCTACGACTCGCTGAGTTGAATC GGATAACAATCTGAGTTTCTGAGTGATCGGTTGACGCACGCACGCACGCGCTCATGGGTGCTACGGGCTCCAAGCTTGAG AAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAATTTCGGCAACACTTGTTATTGCAACAG TGTTTTGCAGGTCTTCAATCCAATCCGATTCACTCTTTTCTCGTTTTTCATTTGTTTATTTTTCTGCATCCAATCAATGG GGTGGTTGTCTTTGCTTAATTCTATGGTTTGTTGATTATGGTGAATGTATTTTGTTGTTTTGGATGTTCTGTTGACTTGT TTTGCTGAATTTTGAAGTGCTTGATTATCGAATCGGTATAGGGATTTAGCATCAACGGTTTTTTGTAATAATAATGATTA GTATTAAAGTCTAGAGTTGAAATTGCTGTTCAATCTTTTCTCTGTGGCATTCAATTGTATTATCGGTGATAGGTAAATGC ACGTGTCAATTCGTTGCTAGGTATGAGTCATGACCTTGATGAGAAGATGTAGTAAAAGCTATTACCCTGTGGATGATGTC AATGCATTTGACCTCTCTAGTGATAGTGTTTGAGAATGGGTGTGTTTATTATTTTCCGGCAAAATTTTAAGGGTTGGTCA CTAACAAGTTATTCAATTTGCCACCTTCCGCAGGCACTATACTTCTGTGTGCCATTTCGGGAACAACTGCTGGAGTATTA TGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCACAGGTAATTAGTC TGTACTCGGTAGTCAGGAAACTGCTTGGCATTACATTTTAGTGCCATTAAGCTTTGACATATTTGACTGGCTAAAGCATG ATTCTCCATTGGAGAGTATGTATTGTCTTCGCTAACTGTGGCTACGGTGCATTACCCATGCCTCAGGAATGGCTTCAAGC TATTTTCAGTGTGGTTTTGTAAATTTTTCCATTTTGTCTATATCTAATTATCTAAGGAAATTTTGTTCAACTTATTGTTT CAAATGTCCATTTAATGGCACTTACTTGAATAACTCGTACTTATACCCAAGAAATTGGTTCAAGGTATTTGTGGTGTGTT TTATGAGAGTATTTTATGATGAATCAATTTTTCCAAATGTTGCCTTGAAACAGATGTAAGTTTGATGGCACTTACATGCC TATTTCGTTCTTGGTTATGAATTTACGTTCTATTTATTTTTTGGTATAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCA TTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGTATGTGCTTAA GTCTAGAATGAGCTTCTTGTACAGGTGATATTCCTAAAGTCTGAACATGTACCCTTTAAATATGATTTTTGTTAACTATT ATATGCCCTTTGGGAAACATAATCTTTTAAATCAGCTTTTCCATAGGCAGCAATCCCATATCGCTTTGTCATAGTGGGCA ATTACTCTATCATGTTTGCTCATACTTTGACTGTATATCTCTGGTATACAAATGGTGATTCTTCTTTTTCTGCGAGGAAA TAAAAATAGTGTTTCTGATGATAGATGTTTGTTTAACAAGTGATTTTAACTTAGTTTGTACAATGACAAATTGTTACTTT CAAATGAGATTGTATATCTCAATTGTTTACTTAAAATGTTATTGGACCATGTAAGCTTATTCATTATTATGATACTATCA TTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGGACAACGTATGTCTCTTATTTTGTCTTAGTTTTTCGTTA GAAACAACATTTCTCATTATTGGTATTCTCTTTGTGATAGGATGCACATGAGTTCTTGAACTTTTTGCTGAATGAACTTG TCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCACCACCTTCTGAAAAGGTTGCCAATGGG TTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGTACACAAAAATTTTCAGGTGACCTTGCA TTGCCAATTTAATGTTTTCATTTTGCATATTGCTTGCGAAAGAATTTGGAGGGACCAACATTTTGACCTTTGTATCGGAT CCAGTCAATTGATGTTCTCCTTTAAGTGCGCATGTCTTTGTAACTACCAGTTTGGGCTTATCCATTCATGTTTGCTTTTA CCTGAATTATTATGGAGATCAGCACATTATCTGAGATTCTAATGTGCTTATTTTTTCTTGTTTAATTTTATATTATGAAC TTTAGTATCACACTTGATAAAACTAAAGTAATAGTAATTTTGCATTGGTCAGATCTTATATATTGTTTTTTCTTTTGTGA GGAGGTGCTTGACGTTACTCTTTCTCTGTTTTGATCGCAAAAATTAAGATTTATTTCTACTTTGCGGAATTTCATTGTTG GTACTTGTGGTTAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAAACGGTTACAGCCAGAGATGAAACATTT TTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAAAAATTTCAGTTCCACTGAGACATTGAA TGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGGTATATCGCTTTTAGACAATCTTATTTCTATAATTACATGAGTA CTTCTTTTCTGTGTTAGCTATTACTTGGTTTCTTTAGTGCTTTGGGAAATGTAGAGACCCTGTTCAGCCATTTTGAATCA CTCGTTTGGCTGAACAATGATGCTGTTTGTTGATGTAATAACAACAATCAAGCCTTATCCCTCTGGTTGAAATTGGTTAA TGGATTAGTTGATGTCATTAGATTTTATTGAAAACAAATTGTCTGAACTCCATTTAGAGCAAGGTCATTTTGATATTCTC CTCAAGTTTTCTTATATCTTTCTCTTCTGGTCCTTGAAATGTTTGTTAAATTGTTTGTTGTGAAGCTAGCTCTGATATCG AATACCTTGAATATCATGTTTTGTTTACAACAAGCAAGTCATAATATGTGCATTTTTCCATTGATTGACATTGTTCATTC GTTATCTGAACAGGGATTTATGGTCATGTTAGTTTATTGTGTATAAATATATACATGCATTCTCTTCCTTCGTTTTTCAT GTCTATTTACCAGCCTTGATAACCAAGATGTGAGCTTTCTTATGATATTAGTTTGCAAGAAGCTCAGAAGAGGATGAAGA TAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTGGGCCGGTACAAGAAGCTG TCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGC AGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCGTGAAGAGTCATAACCACTGGTTATTTT TTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTTGGATCAGCACAGGAATATTCTAGCAAC ACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAGACGGAGGAGTTCTGCAAGTTTTAGGTACT TAGATCATGGACTTATCTTTTCTTCCTGGTTTCTGTATTTATTTTCCTTTCTAACATTTCCCCTTTACTCAACCTGTTGG AGTTGTTACATTCTTCAGAGGATACGGGTTGGAGATGTATACTTAGGATGTTGGCATGTACAGTGGATGGTGGTTGCACT GTCCTTTGTTCGTTTTATCCCTTTCTCACAATAAGAGCAGTATATATATTTATATGGGTGGAAATTTCGCCGATAAGAGG TGTATTCATGGTTGCAATTGTTCAACCAACATTAGAAGAACAATGAAGTGGAAATTGCTCGTTACTCATGGTAGATTATT TGTATTTTGTAGTTTGTCAAGATCTCTCAAGTCTAAACTGATTTAACACACTCTGCAAAGAATGTTTTTTAAGCAGTGTG ATGTACCACATTATCTAAGTGAAGATAATGGTGCTGAAACTTTAAACTAATTGGGAACATACGATTTTGCACATTACATT ATATTTGCATTAAAGCGCGTTGATTTTGCATTATAAGATTGGTTTAAAGGTTTTTTCTGTAAACCTTTAGCAAATAACCC CTAAATTTCCTATCATGCAAGAGAATATGAGTTAAGATTTTACTATAATGATTATAATAAGACAATTCATCAGTTTACTC TGCTGTTAGATGTTAAGCCATACAATGAACAACGAAACAGATGGAAACTAGCTTCTAAGTTGCAGTTGGCATGAAAATAT CTTCGTCCAGCAATGCTTCAAGGTCAATGAGGTTATCAAATTCTCTTGTTTCTTCTGAATTGTTAGAAGTCCTCTCGTGC TTTACCTGCAAGAGGCATATAAAAAAGACTAAGCAACCTCTATTGTCAATCACAAAAACAATTGCTCTGGAAGCGTTTTT CAAGGATATAATTTTTCTTTCACAACAAGTAAATTTAAATAACAATGGGTAGCAAACCTGATTTTCTTGGATCTCAGTTA CAACATTCAACAGCCTATGGTATTGGTCTCTAGCCTCTGGATACTGAACCATTGACTTAACCCTAGCCAAGGCTATCTGC AACCTTTGCTCTGTTTGTTTCCTTCCTTCCTTTAACAAATCATATTCATCCTCTGTGGAAGATTCACCTTGTACCATATT TCCCTCTGAAACTCCCTCCGATTTAAATCCACGCAAACCACATCCTTTTCGGCGCCAACGTAAAACAACCTTTTCAAGAA TTCCAACTGACCAAATTATCTTCCCATGGTTCTTCCTAACCTGGTGACCTCTCACATGAGCCTATAAGACCAACTAAAAA TTAGATCTTTAAAGTCTGATTTAATTCGAAGTATGTTAAAACATTGCTAGTAAAATTAAAGGGTACCTGAATTTTTACGA TTCTTTGTCGAATCAGCAAAAATTCTTTTCTGCCTTTCCAACCGCGGAACTTGTTCTGGATTCGTGTTGCAGCAACATGA GCAGGCTCATTGCGTTGTCCAGATTTGTGTGGTTTCACATTCTTTGTGACAAGTGAAAGAGCCTGTTCATCAGATATTCC AAATCTGTCCTCACCATGTTCCTTGAGTTGTTTTCTCTGGAAGGATTGCACTCTGAAAACTTGATGAATGCGAGCAGCAG CTTGGGTGGCATTGCACACTGCAGCCAGTGAATCTTTCAATGATAGTTCATATGACAGGCCCTCATAATGATTAACTTGT GCAGTGTTTTGTTCTTGGATTCTGTGAAATACTTTTGCTGCAGAAGTTTCTCCCATATTCCTGTTCAAATCGAGAGATGA GAGCTGTGCATGCAGGAAGGATTGAGCAAGGAACCCTGCAATTCCTTTGTGTCCATTTGCCGAAGCTAGGTCAGCTGGTG TTCTACCAGAAGGGTATGCAAGGCATGGATCGGTCAGTGCTACCGGTGCTGCGCCTAGAGAGATGAGTGAAGCCACTGTT CGCTCCCTGATTAAGTAAGGTGCAATAACATAATGAAAAATGATAAGAAAATGAAGAGAAGCTTAACGCACTAACTATGA TGGGTTATTTTCTAGTTAGTATATCCTATGTGTTTTTTTTTCATAACATAAACTTCTGATAAGTACCAATGGTTAGTTAG CTGAGGTAGTTTTAGACTTTTAGTTAGTTTGAGAGAATGTTATAAATAAGAGAGACTTAAAGAGAAATAGCATCTTTGGG CTCATTTTAATTGGGAATTATGTGAGGTGCTGAGACTCTCAAATTACTCAGCAACATTGTAGTTTCTATTCTTGAATAAT ATCAGTTTTCTTCTTCTTCTTTGGCTGTTCCTATCAACTTCCCAATAGTATATATTTGTAGTCAGTTTACCCAAGGTTAG TGTACTTTCACTGATAGTTTCTTCATTAATGACATTCATCAACCCAATATGAAGTAGATTTTGAGTATCAACTAGTAAGC ATTTTGACTGCTTCTATGACCATTTCACATATTTTCTATTCCCACTGAGCTGTTCTTTCTCACACACTATCACTCTTGCA AAGTTGGAATTCCTTTAAAGTTAATCTAGTGGCAGGCATATAATTGTAGATTAATATGATAAACTATGAATTCAGTTTTG ATAAAATGCATTTATGTGCTTTGAGGTGCTCACCTGCCACAAAATGCTGCCCAATGAAGAGCAGTCCATCCATGTACATC GCGAAAGTTCACATTCACGCCTGCAACTACTGTGGGTTCTAGAGCCCAGTCATAGCCAAGAGCAGCCGCAAAATGGAGCA CGCCTTGACCACCCCCATCTAAGACATTAGGGCCTTTCCCATCGTCAGTAATTTTGTGAAGGAGCCATGCCAATAACTTA TCTTTCAGTAGATTTTGAAGCAGCTGCTCCTGTAAAATTTCTGGAGAAAAATCTATCTCTAGAGTAAGTTTCAGCAGCTT ATCCCAATCATCATCTTCCCTCCTCAGCAAAGAGCTGATTTCATTTCTCAGTTCAGATTTCTCACTTATACTCTGTGAAT CTGAGCTTGAAGGTAAGGCATGCTCGAGGGACAACAGTTCTCCGAATCGTATGTTAAAAATATCAACAATGCTGCCTCTG TTCTCACCTGCAGTGTTGATTTCCGGAGAATAGTTTACCCGGAAATCAAATTCTCGTACTTCACTACATGCTAACCTATT GGAACAAGTTACATAGAAAGGAACTCTTCCAGCCTTGTGTGGGGGAGTATGACAGCAAAGAACACCATTTTCAATTATCT CTGCTGGCACTTCTTTCTCGCCAAACATGCATGACCATTTACATTGTTCTGCTTCATGTTGACTCCTTAAGAATTGCCCT GAAATGAGAACCTGTACAATTTTTTTTTTAATAAACGAAGAAATGCATAATCAGGATTGAGCTAACAAATAAACAGAAAA AAAGCAACATGTTATACAACAAGTCTGTGACAATATGATCAAAGCTGATAGCAAGCACATAATTTTTAAAAAATATACCA TAGTTTCTGAGCCTTCAAATGTCCAGCTTGGGGAATAATCAATAATGCTAAAAAGCTGATCATGGGAAACAGATGGATCC AGTACATAGGTGTCCAGGGAAGGAATAGTTGTACTGTCAACTCCATTTTCACTTTCGACTGCATCCCAATAAGCATCAGA AGTTGATTGCTTATTTGATTCTTCCACATCTCCAAGTTCTTTACTCATCCATTGGTTGAAACTATCAAGCTTCTTCAGAC CCTCTTGTGTTCCATCTAACAGATTTGTCTTTAGAGAGAGAGACGTGTCTTCTATTCCATCCAGGCTTCTATTGGCCTCT ATATCTGAATTTAGGCTGTCTTTTTCTTTCAAAGAATTTTCTTGGGGGTCATTTTGCATAAGAAACTTGTTTTGTTTGTA TGGATGTAGAAGACACTGTTCCATGGATTTTTGAAAATCAACTTCATAAACTTCCTGTGCACAGTTGCTATAAATAACCT CACATGTTGAGCCTGAATACAAACCATCTATGGGTGAATTGGACATGCTTAAAGAATTAAACTCAGAAGCCTGTTCACAA GGAAAATTAAGATGTAAGGAATTAAATGAATTTGAAAGGAAAAAGATAAAAAATTAGTAACATGTTAAAAATTACACATG CATAAAGAAAAAGTTCATTCCTTGATTGTTCATTAACTTTAAATAAACATGAAACAAAGAGTTAAGCTATCGGGAATATT TACAACATCAAACCAAAATCAGTTTGCATTAGTTTTGATTTTTGACATAGGTATACCCTGACAAAGCTACTACAGAACAA ACTACAGACCTGGCTATCTGTTTTGTTTCAAATATTGTTACTGTATAAAATGAACATTGCAAAACAAACAAGTATCATAT GCAGATGAAGTACCAATTTTACCTGTACCATAGTTTCTATCTAAAGTAATTAAGCAGATCAGTATCAGCAATGACAAATT TCTTTACCATATAACTCACTCAATACCTGCCAACTTCCTTCAGGTGTTATGGGACTTCCATTGCCGTGCTGTTCATCAAT GCTGATGGTAAAATGTTGCCCCATTATCTCATATGCTTGAGAGGGATCCCTATTGATTCCTTTGTCATTCGATTGTGTTT CCGAAAATGAAGGCTGAAAAGGCACATGATGACTTCCACCATTATTTCCTAAGATATCTTCCCAAGATGAAAAGCCAAGG GACTTTGAGGGTTCATACGTCAATCCAACATTATGAATGTCTTTGATTTTATTGGCTTGACCAAGCGAAGTATAGTTCAC TCCAGGAATGACAGGAAACTTTGCTCGGTCATCTGTTATCATTTTAATGCAATTAGTGCGACATGAAGTAATAACTTGCC TGATCAAAAGGCCAGGATCCATGGAAGATGTAAAAGAGGATTTAATTTTGATGCAGTATTTGTCTTTAAATTTTGTATAA TATCATTGAATCATAAATTGCTGCGTCATTAAGAAAAGTTTGATTCTTAAAACTAGTCCTCAAAAGTG 

CDS sequence (LotjaGi4g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGCACTATACTTCTGTGTGCCATTTCGGGAACAACTGCTGGAGT ATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCACAGATAAGT TCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAG CTATATGCACCAGGATGCACATGAGTTCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGG CTGCAAAAACTGATCCAGATACATCACCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGT CAGAAAGAGCCGTTAGTTACTTGGGTACACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGA AACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGA AAAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGTTTGCAAGAAGCTCAG AAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTGGGCCG GTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGATGCAGATATTGAGT ATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCGTGAAGAGTCATAAC CACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTTGGATCAGCACAGGA ATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG 

Protein sequence (LotjaGi4g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKSIGDPEENLLTCLADLFSQIS SQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPDTSPPSEKVANGFKNGHVNGG QKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ KRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHN HWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYETLGDKN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 363 363 7.2E-212
PANTHER 1 363 363 7.2E-212
Gene3D 1 363 363 3.2E-125
SUPERFAMILY 21 361 341 2.75E-93
ProSiteProfiles 23 363 341 62.362
Pfam 23 360 338 2.8E-61
CDD 24 361 338 0.0
ProSitePatterns 24 39 16 -
MobiDBLite 133 159 27 -
ProSitePatterns 294 312 19 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0396700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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