Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0396700 |
| Transcript ID | LotjaGi4g1v0396700.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G39910.1 ubiquitin-specific protease 3; Swiss-Prot: sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3; TrEMBL-Plants: tr|A0A072TTI7|A0A072TTI7_MEDTR Ubiquitin carboxyl-terminal hydrolase; Found in the gene: LotjaGi4g1v0396700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77457554..77461151) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGTCTTCAATCCAATCCGATTCACTCTTTTCTCGTTTTTCATTT GTTTATTTTTCTGCATCCAATCAATGGGGTGGTTGTCTTTGCTTAATTCTATGGTTTGTTGATTATGGTGAATGTATTTT GTTGTTTTGGATGTTCTGTTGACTTGTTTTGCTGAATTTTGAAGTGCTTGATTATCGAATCGGTATAGGGATTTAGCATC AACGGTTTTTTGTAATAATAATGATTAGTATTAAAGTCTAGAGTTGAAATTGCTGTTCAATCTTTTCTCTGTGGCATTCA ATTGTATTATCGGTGATAGGTAAATGCACGTGTCAATTCGTTGCTAGGTATGAGTCATGACCTTGATGAGAAGATGTAGT AAAAGCTATTACCCTGTGGATGATGTCAATGCATTTGACCTCTCTAGTGATAGTGTTTGAGAATGGGTGTGTTTATTATT TTCCGGCAAAATTTTAAGGGTTGGTCACTAACAAGTTATTCAATTTGCCACCTTCCGCAGGCACTATACTTCTGTGTGCC ATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAG CTGACTTATTTTCACAGGTAATTAGTCTGTACTCGGTAGTCAGGAAACTGCTTGGCATTACATTTTAGTGCCATTAAGCT TTGACATATTTGACTGGCTAAAGCATGATTCTCCATTGGAGAGTATGTATTGTCTTCGCTAACTGTGGCTACGGTGCATT ACCCATGCCTCAGGAATGGCTTCAAGCTATTTTCAGTGTGGTTTTGTAAATTTTTCCATTTTGTCTATATCTAATTATCT AAGGAAATTTTGTTCAACTTATTGTTTCAAATGTCCATTTAATGGCACTTACTTGAATAACTCGTACTTATACCCAAGAA ATTGGTTCAAGGTATTTGTGGTGTGTTTTATGAGAGTATTTTATGATGAATCAATTTTTCCAAATGTTGCCTTGAAACAG ATGTAAGTTTGATGGCACTTACATGCCTATTTCGTTCTTGGTTATGAATTTACGTTCTATTTATTTTTTGGTATAGATAA GTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGT AGCTATATGCACCAGGTATGTGCTTAAGTCTAGAATGAGCTTCTTGTACAGGTGATATTCCTAAAGTCTGAACATGTACC CTTTAAATATGATTTTTGTTAACTATTATATGCCCTTTGGGAAACATAATCTTTTAAATCAGCTTTTCCATAGGCAGCAA TCCCATATCGCTTTGTCATAGTGGGCAATTACTCTATCATGTTTGCTCATACTTTGACTGTATATCTCTGGTATACAAAT GGTGATTCTTCTTTTTCTGCGAGGAAATAAAAATAGTGTTTCTGATGATAGATGTTTGTTTAACAAGTGATTTTAACTTA GTTTGTACAATGACAAATTGTTACTTTCAAATGAGATTGTATATCTCAATTGTTTACTTAAAATGTTATTGGACCATGTA AGCTTATTCATTATTATGATACTATCATTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGGACAACGTATGT CTCTTATTTTGTCTTAGTTTTTCGTTAGAAACAACATTTCTCATTATTGGTATTCTCTTTGTGATAGGATGCACATGAGT TCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCA CCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGT ACACAAAAATTTTCAGGTGACCTTGCATTGCCAATTTAATGTTTTCATTTTGCATATTGCTTGCGAAAGAATTTGGAGGG ACCAACATTTTGACCTTTGTATCGGATCCAGTCAATTGATGTTCTCCTTTAAGTGCGCATGTCTTTGTAACTACCAGTTT GGGCTTATCCATTCATGTTTGCTTTTACCTGAATTATTATGGAGATCAGCACATTATCTGAGATTCTAATGTGCTTATTT TTTCTTGTTTAATTTTATATTATGAACTTTAGTATCACACTTGATAAAACTAAAGTAATAGTAATTTTGCATTGGTCAGA TCTTATATATTGTTTTTTCTTTTGTGAGGAGGTGCTTGACGTTACTCTTTCTCTGTTTTGATCGCAAAAATTAAGATTTA TTTCTACTTTGCGGAATTTCATTGTTGGTACTTGTGGTTAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAA ACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAA AAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGGTATATCGCTTTTAGAC AATCTTATTTCTATAATTACATGAGTACTTCTTTTCTGTGTTAGCTATTACTTGGTTTCTTTAGTGCTTTGGGAAATGTA GAGACCCTGTTCAGCCATTTTGAATCACTCGTTTGGCTGAACAATGATGCTGTTTGTTGATGTAATAACAACAATCAAGC CTTATCCCTCTGGTTGAAATTGGTTAATGGATTAGTTGATGTCATTAGATTTTATTGAAAACAAATTGTCTGAACTCCAT TTAGAGCAAGGTCATTTTGATATTCTCCTCAAGTTTTCTTATATCTTTCTCTTCTGGTCCTTGAAATGTTTGTTAAATTG TTTGTTGTGAAGCTAGCTCTGATATCGAATACCTTGAATATCATGTTTTGTTTACAACAAGCAAGTCATAATATGTGCAT TTTTCCATTGATTGACATTGTTCATTCGTTATCTGAACAGGGATTTATGGTCATGTTAGTTTATTGTGTATAAATATATA CATGCATTCTCTTCCTTCGTTTTTCATGTCTATTTACCAGCCTTGATAACCAAGATGTGAGCTTTCTTATGATATTAGTT TGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATG GAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGA TGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCG TGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTT GGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG
CDS sequence (LotjaGi4g1v0396700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGCACTATACTTCTGTGTGCCATTTCGGGAACAACTGCTGGAGT ATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCACAGATAAGT TCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAG CTATATGCACCAGGATGCACATGAGTTCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGG CTGCAAAAACTGATCCAGATACATCACCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGT CAGAAAGAGCCGTTAGTTACTTGGGTACACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGA AACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGA AAAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGATGTGAGCTTTCTTAT GATATTAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTT TAAATACATGGAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACA CTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTAT GTCAGCCTCGTGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCA AACGTTCTTTGGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACA AGAACTAG
Protein sequence (LotjaGi4g1v0396700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKSIGDPEENLLTCLADLFSQIS SQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPDTSPPSEKVANGFKNGHVNGG QKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRCELSY DISLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHY VSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYETLGDKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 371 | 371 | 1.2E-208 | – | |
| PANTHER | 1 | 371 | 371 | 1.2E-208 | – | |
| Gene3D | 1 | 371 | 371 | 2.7E-122 | – | |
| SUPERFAMILY | 21 | 369 | 349 | 3.73E-90 | ||
| ProSiteProfiles | 23 | 371 | 349 | 60.889 | ||
| Pfam | 23 | 368 | 346 | 3.1E-61 | ||
| ProSitePatterns | 24 | 39 | 16 | - | ||
| CDD | 24 | 369 | 346 | 0.0 | – | |
| MobiDBLite | 133 | 159 | 27 | - | – | |
| ProSitePatterns | 302 | 320 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi4g1v0396700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…