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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0422300 |
| Transcript ID | LotjaGi4g1v0422300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copine-1; TAIR: AT5G61910.4 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp|Q941L3|BON1_ARATH Protein BONZAI 1; TrEMBL-Plants: tr|A0A151S2L5|A0A151S2L5_CAJCA Copine-3; Found in the gene: LotjaGi4g1v0422300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79734914..79740614) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGTAAAAGATTACGGGTTTTAGCGGTATGCATGCGGTTATTATGAAAAAATAATATCAAAAGAAAATATCTAAAATT AATCAAAGTATATAGGAGTACTATTATTAAAATGAAGTTAAGCTTAAAGAAAAAAACGCGGTTTTTCCTGAATTGGGGAA ATTGCAAGGTAGATAAATAAATAAAAGGATATTCCGTGTCTGGTTTTGCTGATGTATTAATTTGTCGTCTCTTTCCTTTT TCTTTTCAATTTCCAAGTCTCCGCCACACCACATTCATTTCAACGCCATGGGTAACTGCTTCTCCGACGTCGCCGGTGGC CGTACAGCAATCGGCGGCACCGCCGGCGGCATGCTCAGGCCATCAGATGCTCCCAACGACGCCATCGACAACTTCCTCAG GTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGGTTGGTTGGTTTTCTCTCTCAACTTCTTTCACCACTTCAATTC TTCGTTGCAATATGTATCTGGTTTTCATAGAGCTCTTTCTGAATGTAACTGTGGTGTTGTTGTTGTTTTCTCCTGCAGTT GTCGTTTTCTGCTTCTGGCTTGCGTGATCGCGATGTGCTCTCCAAGGTTTGTCGTTTTCACTATTTCATGAATCTCAATT CTCAAGCTCCATTAATGCTTTTCTTAGCTCTGAAAAATGATAGTAATGATAGTAAAAGAGTAACTAAACAACTAGGAAAA TTGGAATTTAGATTATTGTAACACTGTGTAGTGGCTAGTGAGGTATCTGAGTGTATGTTTGGAGTGGAGTTTCAAAATTT GACTTATGAACTTGATTTTGTAAAATTGATTTTAATTTTAGTCAATTTTAATCAATTATTCAGTCACATGGTTATTTGAG TAAGTGTCCTTGCTGTAGAGTGATCCGATGATGGTTCTATATGCAAGAGGGAAAAATGGAGCACTTGAGGAACTTTGTCG GACGGAAGTAGTTCTGAATTCATTGAGACCTACATGGATTACTAAACACACTCTCATTTATCATTTTGAGGTTGTTCAGT TTTTAGTGTAAGTTTCAATTTCGATGTTTTTACTTCTAACAATGCGGCATATGAGCATTTTTGTTGTTTCACCAGGAATT GTTCTATAAAATTTCTTTCATAACAGGTTTCGCGTGTATGATGTTGATACTCAGTTTCACAATGCAGATGTCAAGGTATA AAGTTTATCATATATACACTTTCTCTCTCTCACACACGCTTTCTGTTTACAAGATTGCCCCATTGATTCTGAGAATCCTG TGATCTAATTTGAATTAATTTAGGGAATCCAAGTTCTTTCCTTCACACGATATTAATTTTCAATAGATGTGAAATGTGAT AACATATTGATATAGCATTAGTATAAAAGTGCAGGTAGTAAATATTTGGTTGACTTATGCAGATCCTTAAGCTAGAAGAG CAGCAATATCTAGGAGAGGCAACCTGTGCATTATCCCAGGTAATCGAGAGGCAGTTTAACTTTTTGTTGATTGATATTAG ACAAAAGAAAATTCACTGCACTCTCACATCTCAATGAAGCTATATCATTACGACTATCATTATCTCAACATAAATGTTTT TCTTTCCAATATATGGTCTCAATGTATATTACATATTGCAGAGAGTCTGTCATTAAGACTTGACAGACTCTGTTCAATAG GCAACATACGCTGTTATATGGTGCTTGAAAATGCTTAACTTTTCAGTGTTTAGAGTCTTAGGTAACTACCAAGTATATTG AAATTTTTTGAATCCAATAATTGCATCCTCAAATTATGGTTCAGTATGCGTTACTGAAAATTGATTAGCATCTCAACAAA TAACAATTGTACCCAACAACAGTAACAATTTTCCTTGTGCAGATAATTACAAAGCCTGATCGGTCAATGACATTAGATTT ACAAAGAGATTCTATGAGATCTAGCCCCTCCCTAAACTGTGGGAAGCTCTTGGTGCATGCTGAGGAATCTATTAGCTCAA AAACTTCAATAGAGATGATACTTAGATGTTCAGATTTGGAATATAGGGATCTCTTCTCAAAAAGTGTATGTGCGTTAAAA AATTATATTTTTTTAGGCATTATGAGGAAATCAACTATGATATAAAAGTGGTTTCGTGTATCTTGCAGGATCCCTTTCTA TTGATATCAAAAGTCGTGGAAGGTGGTACCCATGTTCCAATTTGCAAAACAGAAGCTATAAAGAATGATCACAGCCCAAC GTGGAAGCCAGTGTACTTGAATATTCAACAAGTAGGAAGCAAGGTATAGAGTAAAGAGTTTGGCCTAACCCTAATTCTAA TATCAAGAATTGAACTCCTAACCAATTAGTAGGCTTCAATACCACGTCAATAACCAACTCTTTAAAAGCTTAAGTTGTTT GGTAAATGCTCATTAATGGCGTAATATCTAATAGTCACTTTTTCACTGCATCTCGATCAATGCCTGTCATCAGTGATAAT ATGGATCTTTGGCTAGTGCTAACATATACAATGTTATTAATATACTAACAACAGCCCGTCCACTTAGAGCATGAAAATAT TGCTATCATACTGGTGGCCCTGTGCACTAGGCTTCCACTGGTATGGGGTCTTGGAGGGTTGATCTACCCAACCTTACCAT GTACTGGTGGTTGTTTCTGTGATTAAAACCTGTCACCAGTAAGTCAGAGAGCAGAAATCTTACCGTTACAGGAAGGGTTA CTCTGTATTTCTTGTTACCATAACAATGGAAATTTTTCCTTACATTACATAACTTTATCTTCTATTTCAGGGCAGTATTT TGGACTATGGTATTAGACATACTGATACAGTGAAAACTATCTTTATTTTTTCTTTTTTATTGTATACAGGAAAATCCTTT GGTAATAGAGTGCTATAACTTTAATAGCAATGGCAGACATGATTTGATGGGGTAATCAGCAATTACTTTTTGTCTGTGTC CTTTTGTCCCTTAAAATCTATTCCTGGGAAGATTGCATATCAGGATGGTTTATTCTTTTTTATCAGAAAAGTGCAGAAAT CTTTGGTGGATTTGGAGAAGCTTCATTTCGGTGGCCAAGGAGAAAATTTATTCTTGTCTGCAGCTGTTGGTCATAATTCT CAAAACAAGGTTTTATTATATTAAATGTTTATTTCAATCATGAATTTCTCTATCTTTCCGTAAAAGCATATTTGACTATA AGTTATAACGCAGGTGTTGAAGAGCAGGCTATTTGTGGATAAATTTTCTGAAAGTGTCCAATATACTTTCCTGGATTACT TGGCTGGGGGATTTGAGTTGAACTTCATGGTGGCCATTGATTTTACTGGTACGTCACATATCCTTAAACTTGTTCTACTT AATTATTTTCTGGACTGTTATAGATAATTTTTTTAATAATGCTTAGGTTCCAGTTTCCATTAAAAAGCATCTTTTTAGTC CTCGCTAATGCTTAGGTTCCAGTTTCCATTAGTGTGCCTAGTAGCGTGGGAGAGTTAGTCTGTATGCAGGCCACCTTGAG GGAGCATTTATGGGTTTCCTAAAGTGCTAATCTCAAGGCCCCTTTTGTCCATGTCCCCTTCTGATATGAGGTTGACCTTT GCCTTCCTTAACCTTTTTTTTTTCCTTTAGCAAGCCCCAACACTGCAACAACATTTTCCTTAGGATTGTAAAATAATATA AACCTTACAAGACATATTCTATGTTTCCAGCAGACATGCCAGTTATATATGTATGAGAAGTATGCTATTTATTTTGAAGG ACTAACCCCTCCTTTTGTTTACCAGCTTCAAATGGAAACTCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGG ACGGCCAAATGCATACCAGAGGGTGAGAAATGTTTTTTTATTTGAATTTTCATAATTTAATATGTAACTGACATGTAAAA ATATCTTTCTAGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTTTATGATTCAGACAAGAGATTTCCTACATGGGGATT TGGAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGCAATAATTACTGTGAGGTAGCAATGC GAAATCTGATCTTTCTTTTGTTGTCATATTGATATAGTTCCTTATTATAAGCTCTGTGTTTTGCAGGTGGACGGCATCCA AGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGTA ATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGTAAGAATC AAAATATGCAGTTTCTTTGCAGTATTTACCTGTGGAAGTATATTTGTGATAATAAGAATATGATCCTAGGCACACGTGTT GAAGCTATAGGATCATATTATGGATTACATTTCTTTAAAGAATATGATGCTAGACTGACTGACTTATAACATTTCTTTAA TTAATGTCCTCCTAGGATGGAGTTGTGACGGATCTTCAAGAAACAAAAGATGCTCTCGTCAAAGCATCTGACCTACCATT ATCCATCCTTATTGTTGGTGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTATTTATTCCAATGTGCTTGCTCTTTTACT CATATAGAGAGTTATAATTAGTTTTCCGATGTATAAAAAAAAGAGTTATAATTGTTTGGTATCTGAGGTGTTGAGCTGTG TGACTGGTATAGCACCGCAGGGCATAATGTAATTTTGTTGTTCCATGTAGCAGATTTTGGATGCTGACAAAGGAGATAGG CTTGAAAGTTCGTACGGACGCATTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTAGGTATTA ATTTACAAATTATGACTTCCTCAAATGACTTCTAACTTACCAATCTCTTGCAAACTACTTCCTACTGCAGGTGGTGAAAT TTCAGTAGTTCAAGCACTTCTAGCAGAACTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAGATATCCAACCAAGTC TCTAGTCATGTAAAGACTTCTTTTTTGGTCTAAATACTGTACAGAAATGTGTTCTATTCATTGATCATTGTGCAATTCTC AGGCCCATTTCATTTTCAATATCATGAATCGGTAAATTTGGCTGAGAAGAACCCATGCTTTATGCTAAATGCTAACTAAC GGGTCAAGAAGGGTTCATCAGCTAGCTGCTTTATCTTGAGTTTTGTACTTTTCCACTTTCCAGCCTTATGGTTGGAATTT TCTTTTCTTCTTGTGTTCATGTTTTTAGTGTTTTCTGGTTGTTTGGGCTTGGAAAAAGCCATAGTACAGATTGAAATCTC TATTTTCTTCCAGGCGAGGGCAAAATTTTAGTCCTACCTTTGTCTACATTGAACCTCGAAAAATAATCATTCAATTCTTC ATCATACAATTTTTTTATGCAAGTCAACAATTTGCGGATCACAAGTTGAGTCTACTCATAATTAATTTCTGTAATTTGGT TAATTCACCCCTTTCAAAGATAGGCTTGGCAGTGGGAGTGTATTTGGGTCAATCTGGCCCCATGATCCTCATGGCGTACG TAATATTCAGGACTGAAATCTTAATTCATCTTGTAAGGAACATGTTAAAATCCACAGTAGTTGTACTTATATCGCATCGC TGCATTTGCAAGTTGCAAGCA
CDS sequence (LotjaGi4g1v0422300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACTGCTTCTCCGACGTCGCCGGTGGCCGTACAGCAATCGGCGGCACCGCCGGCGGCATGCTCAGGCCATCAGA TGCTCCCAACGACGCCATCGACAACTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTT CTGCTTCTGGCTTGCGTGATCGCGATGTGCTCTCCAAGAGTGATCCGATGATGGTTCTATATGCAAGAGGGAAAAATGGA GCACTTGAGGAACTTTGTCGGACGGAAGTAGTTCTGAATTCATTGAGACCTACATGGATTACTAAACACACTCTCATTTA TCATTTTGAGGTTGTTCAGTTTTTAGTGTTTCGCGTGTATGATGTTGATACTCAGTTTCACAATGCAGATGTCAAGATCC TTAAGCTAGAAGAGCAGCAATATCTAGGAGAGGCAACCTGTGCATTATCCCAGATAATTACAAAGCCTGATCGGTCAATG ACATTAGATTTACAAAGAGATTCTATGAGATCTAGCCCCTCCCTAAACTGTGGGAAGCTCTTGGTGCATGCTGAGGAATC TATTAGCTCAAAAACTTCAATAGAGATGATACTTAGATGTTCAGATTTGGAATATAGGGATCTCTTCTCAAAAAGTGATC CCTTTCTATTGATATCAAAAGTCGTGGAAGGTGGTACCCATGTTCCAATTTGCAAAACAGAAGCTATAAAGAATGATCAC AGCCCAACGTGGAAGCCAGTGTACTTGAATATTCAACAAGTAGGAAGCAAGGAAAATCCTTTGGTAATAGAGTGCTATAA CTTTAATAGCAATGGCAGACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGATTTGGAGAAGCTTCATTTCGGTG GCCAAGGAGAAAATTTATTCTTGTCTGCAGCTGTTGGTCATAATTCTCAAAACAAGGTGTTGAAGAGCAGGCTATTTGTG GATAAATTTTCTGAAAGTGTCCAATATACTTTCCTGGATTACTTGGCTGGGGGATTTGAGTTGAACTTCATGGTGGCCAT TGATTTTACTGCTTCAAATGGAAACTCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCAT ACCAGAGGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTTTATGATTCAGACAAGAGATTTCCTACATGGGGATTTGGA GCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGCAATAATTACTGTGAGGTGGACGGCATCCA AGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGTA ATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTT GTGACGGATCTTCAAGAAACAAAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTAGG AGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGCTT CACGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAA CTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG
Protein sequence (LotjaGi4g1v0422300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCFSDVAGGRTAIGGTAGGMLRPSDAPNDAIDNFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNG ALEELCRTEVVLNSLRPTWITKHTLIYHFEVVQFLVFRVYDVDTQFHNADVKILKLEEQQYLGEATCALSQIITKPDRSM TLDLQRDSMRSSPSLNCGKLLVHAEESISSKTSIEMILRCSDLEYRDLFSKSDPFLLISKVVEGGTHVPICKTEAIKNDH SPTWKPVYLNIQQVGSKENPLVIECYNFNSNGRHDLMGKVQKSLVDLEKLHFGGQGENLFLSAAVGHNSQNKVLKSRLFV DKFSESVQYTFLDYLAGGFELNFMVAIDFTASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFG ARPIDGPVSHCFNLNGSNNYCEVDGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGV VTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAE LPTQFLAYMRSRDIQPSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 578 | 578 | 8.6E-295 | – | |
| PANTHER | 1 | 578 | 578 | 8.6E-295 | – | |
| CDD | 47 | 164 | 118 | 8.25322E-36 | – | |
| SMART | 48 | 161 | 114 | 0.64 | ||
| Gene3D | 52 | 184 | 133 | 7.5E-14 | ||
| SUPERFAMILY | 53 | 164 | 112 | 4.65E-13 | – | |
| Pfam | 54 | 155 | 102 | 2.3E-7 | ||
| Gene3D | 185 | 302 | 118 | 1.8E-11 | ||
| CDD | 194 | 289 | 96 | 1.23738E-31 | ||
| SMART | 197 | 299 | 103 | 7.6E-5 | ||
| SUPERFAMILY | 197 | 288 | 92 | 1.71E-13 | – | |
| Pfam | 197 | 287 | 91 | 5.1E-7 | ||
| CDD | 310 | 565 | 256 | 4.2381E-125 | ||
| SMART | 340 | 537 | 198 | 4.5E-7 | ||
| SUPERFAMILY | 341 | 523 | 183 | 1.78E-14 | ||
| ProSiteProfiles | 342 | 561 | 220 | 8.686 | ||
| Pfam | 361 | 576 | 216 | 9.3E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0422300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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