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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0422300 |
Transcript ID | LotjaGi4g1v0422300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Copine-1; TAIR: AT5G61910.4 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp|Q941L3|BON1_ARATH Protein BONZAI 1; TrEMBL-Plants: tr|A0A072U553|A0A072U553_MEDTR Calcium-dependent phospholipid-binding copine family protein; Found in the gene: LotjaGi4g1v0422300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79738399..79739958) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGAGAGTTAGTCTGTATGCAGGCCACCTTGAGGGAGCATTTATGGGTTTCCTAAAGTGCTAATCTCAAGGCCCCTTT TGTCCATGTCCCCTTCTGATATGAGGTTGACCTTTGCCTTCCTTAACCTTTTTTTTTTCCTTTAGCAAGCCCCAACACTG CAACAACATTTTCCTTAGGATTGTAAAATAATATAAACCTTACAAGACATATTCTATGTTTCCAGCAGACATGCCAGTTA TATATGTATGAGAAGTATGCTATTTATTTTGAAGGACTAACCCCTCCTTTTGTTTACCAGCTTCAAATGGAAACTCACGC CTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGTGAGAAATGTTTTTTTATTTGA ATTTTCATAATTTAATATGTAACTGACATGTAAAAATATCTTTCTAGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTT TATGATTCAGACAAGAGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTT GAATGGAAGCAATAATTACTGTGAGGTAGCAATGCGAAATCTGATCTTTCTTTTGTTGTCATATTGATATAGTTCCTTAT TATAAGCTCTGTGTTTTGCAGGTGGACGGCATCCAAGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCT TGCAGGACCAACTCTTTTTGGACCTGTCATAAGTAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAA AGTACTTTGTTTTGTTAATAATCACAGTAAGAATCAAAATATGCAGTTTCTTTGCAGTATTTACCTGTGGAAGTATATTT GTGATAATAAGAATATGATCCTAGGCACACGTGTTGAAGCTATAGGATCATATTATGGATTACATTTCTTTAAAGAATAT GATGCTAGACTGACTGACTTATAACATTTCTTTAATTAATGTCCTCCTAGGATGGAGTTGTGACGGATCTTCAAGAAACA AAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTAGGAGGAGCTGATTTCAAAGAAAT GGAGGTATTTATTCCAATGTGCTTGCTCTTTTACTCATATAGAGAGTTATAATTAGTTTTCCGATGTATAAAAAAAAGAG TTATAATTGTTTGGTATCTGAGGTGTTGAGCTGTGTGACTGGTATAGCACCGCAGGGCATAATGTAATTTTGTTGTTCCA TGTAGCAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGCTTCACGTGATATAGTCCAG TTTGTTCCATTTCGGGATGTTCAAAGTAGGTATTAATTTACAAATTATGACTTCCTCAAATGACTTCTAACTTACCAATC TCTTGCAAACTACTTCCTACTGCAGGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAACTACCTACTCAATTTTT AGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG
CDS sequence (LotjaGi4g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCCTTCTGCTTCAAATGGAAACTCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGC ATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTTTATGATTCAGACAAGAGATTTCCTACATGGGGATTTG GAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGCAATAATTACTGTGAGGTGGACGGCATC CAAGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAG TAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAG TTGTGACGGATCTTCAAGAAACAAAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTA GGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGC TTCACGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAG AACTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG
Protein sequence (LotjaGi4g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPSASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSNNYCEVDGI QGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGV GGADFKEMEILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRDIQPSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 231 | 228 | 5.5E-132 | – | |
PANTHER | 4 | 231 | 228 | 5.5E-132 | ||
Pfam | 15 | 230 | 216 | 6.8E-82 | ||
SUPERFAMILY | 24 | 177 | 154 | 8.23E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calcium-dependent phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. | ||
Biological process | Negative regulation of cell death | Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. |
Expression pattern of LotjaGi4g1v0422300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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