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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010734
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.640s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0078919.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Cicer arietinum] gi|502091422|ref|XP_004489546.1| chr0 30431954 30434472 +
2 domain predictions
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Lj0g3v0213429.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like [Glycine max] gi|356508955|ref|XP_003523218.1| chr0 107772421 107773723 +
2 domain predictions
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Lj0g3v0274279.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356512040|ref|XP_003524729.1| chr0 142192541 142193067 -
2 domain predictions
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Lj0g3v0314199.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X2 [Cicer arietinum] gi|502135587|ref|XP_004502384.1| chr0 163935535 163940332 +
2 domain predictions
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Lj0g3v0322249.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356556700|ref|XP_003546661.1| chr0 168278880 168283373 +
2 domain predictions
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Lj1g3v1353690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16110935 16115195 +
3 domain predictions
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Lj1g3v1353690.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X1 [Cicer arietinum] gi|502137077|ref|XP_004502959.1| chr1 16110935 16114786 +
2 domain predictions
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Lj1g3v1353690.3
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16110935 16115195 +
2 domain predictions
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Lj1g3v1353690.4
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG1-like isoform X3 [Cicer arietinum] gi|502137082|ref|XP_004502961.1| chr1 16111237 16115195 +
2 domain predictions
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Lj1g3v4955270.1
n.a. PREDICTED: protein BONZAI 3-like [Glycine max] gi|356505898|ref|XP_003521726.1| chr1 60258765 60265069 -
3 domain predictions
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Lj1g3v4955270.2
n.a. PREDICTED: protein BONZAI 3-like [Glycine max] gi|356504074|ref|XP_003520824.1| chr1 60258765 60260318 -
2 domain predictions
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Lj3g3v0938190.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356528633|ref|XP_003532904.1| chr3 11491072 11498637 +
2 domain predictions
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Lj4g3v2717190.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356511063|ref|XP_003524251.1| chr4 36624714 36628572 -
2 domain predictions
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Lj4g3v2717190.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356511063|ref|XP_003524251.1| chr4 36624714 36628181 -
2 domain predictions
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Lj4g3v2871890.1
n.a. PREDICTED: protein BONZAI 1-like [Cicer arietinum] gi|502139656|ref|XP_004503848.1| chr4 38406834 38412110 -
3 domain predictions
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LotjaGi1g1v0227600.1
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT5G14420.1 RING domain ligase2; Swiss-Prot: sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2; TrEMBL-Plants: tr|V7AXG0|V7AXG0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0227600 LjG1.1_chr1 52752796 52757755 +
3 domain predictions
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LotjaGi1g1v0321500.1
n.a. E3 Ubiquitin ligase family protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|G7JC45|G7JC45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi1g1v0321500 LjG1.1_chr1 77220411 77226341 +
3 domain predictions
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LotjaGi1g1v0776600.1
n.a. Copine-1; TAIR: AT1G08860.1 Calcium-dependent phospholipid-binding Copine family protein; Swiss-Prot: sp|Q5XQC7|BON3_ARATH Protein BONZAI 3; TrEMBL-Plants: tr|I1JRH5|I1JRH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0776600 LjG1.1_chr1 134870053 134876090 -
3 domain predictions
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LotjaGi2g1v0076400.1
n.a. E3 ubiquitin-protein ligase RGLG2; TAIR: AT5G14420.1 RING domain ligase2; Swiss-Prot: sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2; TrEMBL-Plants: tr|A0A0L9VN29|A0A0L9VN29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0076400 LjG1.1_chr2 19970912 19976890 +
2 domain predictions
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LotjaGi2g1v0076400.2
n.a. E3 ubiquitin-protein ligase RGLG2; TAIR: AT5G14420.1 RING domain ligase2; Swiss-Prot: sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2; TrEMBL-Plants: tr|A0A0L9VN29|A0A0L9VN29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0076400 LjG1.1_chr2 19971821 19976906 +
2 domain predictions
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LotjaGi3g1v0131800.1
n.a. E3 ubiquitin-protein ligase RGLG2; TAIR: AT1G79380.1 Ca(2)-dependent phospholipid-binding protein (Copine) family; Swiss-Prot: sp|Q9SAL0|RGLG4_ARATH E3 ubiquitin-protein ligase RGLG4; TrEMBL-Plants: tr|A0A151QXI5|A0A151QXI5_CAJCA E3 ubiquitin-protein ligase RGLG2; Found in the gene: LotjaGi3g1v0131800 LjG1.1_chr3 16530575 16536639 +
2 domain predictions
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LotjaGi3g1v0296000.1
n.a. E3 ubiquitin-protein ligase RGLG2; TAIR: AT1G79380.1 Ca(2)-dependent phospholipid-binding protein (Copine) family; Swiss-Prot: sp|Q9SAL0|RGLG4_ARATH E3 ubiquitin-protein ligase RGLG4; TrEMBL-Plants: tr|K7MCZ5|K7MCZ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0296000 LjG1.1_chr3 61343696 61348434 +
2 domain predictions
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LotjaGi4g1v0392200.1
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.2 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A072TV45|A0A072TV45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77070749 77075798 -
2 domain predictions
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LotjaGi4g1v0392200.2
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.2 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A072TV45|A0A072TV45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77070749 77075798 -
2 domain predictions
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LotjaGi4g1v0392200.3
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A0S3QYP6|A0A0S3QYP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77070749 77075798 -
2 domain predictions
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LotjaGi4g1v0392200.4
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.2 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A072TV45|A0A072TV45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77071578 77075772 -
2 domain predictions
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LotjaGi4g1v0392200.5
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A0S3QYP6|A0A0S3QYP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77071736 77075350 -
2 domain predictions
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LotjaGi4g1v0392200.6
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A0S3QYP6|A0A0S3QYP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392200 LjG1.1_chr4 77072185 77075181 -
2 domain predictions
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LotjaGi4g1v0410700.1
n.a. E3 Ubiquitin ligase family protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|A0A1J7HDM6|A0A1J7HDM6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410700 LjG1.1_chr4 78661418 78666362 +
2 domain predictions
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LotjaGi4g1v0410700.2
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|I1K512|I1K512_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410700 LjG1.1_chr4 78661418 78666362 +
2 domain predictions
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LotjaGi4g1v0422300.1
n.a. Copine-1; TAIR: AT5G61910.4 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp|Q941L3|BON1_ARATH Protein BONZAI 1; TrEMBL-Plants: tr|A0A151S2L5|A0A151S2L5_CAJCA Copine-3; Found in the gene: LotjaGi4g1v0422300 LjG1.1_chr4 79734914 79740614 +
3 domain predictions
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LotjaGi4g1v0422300.2
n.a. Copine-1; TAIR: AT5G61910.4 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp|Q941L3|BON1_ARATH Protein BONZAI 1; TrEMBL-Plants: tr|A0A072U553|A0A072U553_MEDTR Calcium-dependent phospholipid-binding copine family protein; Found in the gene: LotjaGi4g1v0422300 LjG1.1_chr4 79738399 79739958 +
2 domain predictions
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LotjaGi6g1v0095700.1
n.a. E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT3G01650.1 RING domain ligase1; Swiss-Prot: sp|Q9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1; TrEMBL-Plants: tr|V7D004|V7D004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0095700 LjG1.1_chr6 20627437 20632277 +
2 domain predictions
 –