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LotjaGi4g1v0422300.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0422300
Transcript ID	LotjaGi4g1v0422300.2
Related isoforms 1	LotjaGi4g1v0422300.1
Lotus japonicus genome version	Gifu v1.2
Description	Copine-1; TAIR: AT5G61910.4 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp\|Q941L3\|BON1_ARATH Protein BONZAI 1; TrEMBL-Plants: tr\|A0A072U553\|A0A072U553_MEDTR Calcium-dependent phospholipid-binding copine family protein; Found in the gene: LotjaGi4g1v0422300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:79738399..79739958) extracted from Lotus japonicus Gifu genome v1.2.

GTGGGAGAGTTAGTCTGTATGCAGGCCACCTTGAGGGAGCATTTATGGGTTTCCTAAAGTGCTAATCTCAAGGCCCCTTT TGTCCATGTCCCCTTCTGATATGAGGTTGACCTTTGCCTTCCTTAACCTTTTTTTTTTCCTTTAGCAAGCCCCAACACTG CAACAACATTTTCCTTAGGATTGTAAAATAATATAAACCTTACAAGACATATTCTATGTTTCCAGCAGACATGCCAGTTA TATATGTATGAGAAGTATGCTATTTATTTTGAAGGACTAACCCCTCCTTTTGTTTACCAGCTTCAAATGGAAACTCACGC CTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGTGAGAAATGTTTTTTTATTTGA ATTTTCATAATTTAATATGTAACTGACATGTAAAAATATCTTTCTAGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTT TATGATTCAGACAAGAGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTT GAATGGAAGCAATAATTACTGTGAGGTAGCAATGCGAAATCTGATCTTTCTTTTGTTGTCATATTGATATAGTTCCTTAT TATAAGCTCTGTGTTTTGCAGGTGGACGGCATCCAAGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCT TGCAGGACCAACTCTTTTTGGACCTGTCATAAGTAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAA AGTACTTTGTTTTGTTAATAATCACAGTAAGAATCAAAATATGCAGTTTCTTTGCAGTATTTACCTGTGGAAGTATATTT GTGATAATAAGAATATGATCCTAGGCACACGTGTTGAAGCTATAGGATCATATTATGGATTACATTTCTTTAAAGAATAT GATGCTAGACTGACTGACTTATAACATTTCTTTAATTAATGTCCTCCTAGGATGGAGTTGTGACGGATCTTCAAGAAACA AAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTAGGAGGAGCTGATTTCAAAGAAAT GGAGGTATTTATTCCAATGTGCTTGCTCTTTTACTCATATAGAGAGTTATAATTAGTTTTCCGATGTATAAAAAAAAGAG TTATAATTGTTTGGTATCTGAGGTGTTGAGCTGTGTGACTGGTATAGCACCGCAGGGCATAATGTAATTTTGTTGTTCCA TGTAGCAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGCTTCACGTGATATAGTCCAG TTTGTTCCATTTCGGGATGTTCAAAGTAGGTATTAATTTACAAATTATGACTTCCTCAAATGACTTCTAACTTACCAATC TCTTGCAAACTACTTCCTACTGCAGGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAACTACCTACTCAATTTTT AGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCCCTTCTGCTTCAAATGGAAACTCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGC ATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTTTATGATTCAGACAAGAGATTTCCTACATGGGGATTTG GAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGCAATAATTACTGTGAGGTGGACGGCATC CAAGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAG TAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAG TTGTGACGGATCTTCAAGAAACAAAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTA GGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGC TTCACGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAG AACTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSPSASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSNNYCEVDGI QGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGV GGADFKEMEILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRDIQPSL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10857 View details on PTHR10857 Search for proteins/transripts with this domain View external data on PTHR10857	4	231	228	5.5E-132	–
PANTHER	PTHR10857:SF116 View details on PTHR10857:SF116 Search for proteins/transripts with this domain View external data on PTHR10857:SF116	4	231	228	5.5E-132	IPR031116 Show description in modal box View details on IPR031116 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07002 View details on PF07002 Search for proteins/transripts with this domain View external data on PF07002	15	230	216	6.8E-82	IPR010734 Show description in modal box View details on IPR010734 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53300 View details on SSF53300 Search for proteins/transripts with this domain View external data on SSF53300	24	177	154	8.23E-14	IPR036465 Show description in modal box View details on IPR036465 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005544 View details of GO:0005544 AmiGO InterPro QuickGO	Molecular function	Calcium-dependent phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.	Subterm of View details of GO:0005543
GO:0060548 View details of GO:0060548 AmiGO InterPro QuickGO	Biological process	Negative regulation of cell death	Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.	Subterm of View details of GO:0010941 View details of GO:0048523 Negatively regulates View details of GO:0008219

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0422300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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