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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0428300 |
Transcript ID | LotjaGi4g1v0428300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Disease resistance protein (TIR-NBS class); TAIR: AT4G23440.1 Disease resistance protein (TIR-NBS class); Swiss-Prot: sp|Q9KGG1|RADA_BACHD DNA repair protein RadA; TrEMBL-Plants: tr|K7L4F5|K7L4F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80269054..80272035) extracted from Lotus japonicus Gifu genome v1.2.
AGCATGGATACTCAAGAAGAGAGTTCCACTTTTGGACCATTGACAGCAATGAGTTCAAGGAACATGTCATCATCATCTTC AGCATTTTTTTCAGCAAATCAATCACCATTCTTCTCTCCAAGAACATCATCATGTCATTTATCAGAGACTTTGAGACCTG ATACACCAAGTGGAAGAATTCATATAGATGCTGCTGCTCCTCCCAGCACCAGTTCAGTGATTCCAGAACCAAAGTCTCTA GTAAATGCTGGATTTTCCTTCTCTGAGGTGGCTGCATCAGGTGATTTGCAGAAACTTGATCGAATATCTTCTTCTGTTGG CAATGGCATCTCCAGTAGCACCGTATCTGGTTACTGCCATCCCTACGACGATAGTTGTTCTGGAACGAAAGAGAAGCGAA GTAAGAGAGGAAGAAACCAAAGAACATCATCAACACCGGGTTCCAGATCGATTTCTTCTTACAGACTGAAGAGTTGTGAT GTCTTCATAGGATTACATGGTCGTAAACCTCCTCTACTAAGATTCGCCAATTGGCTCCGCGCCGAGTTGGAAATTCAAGG CATCAGTTGCTTTTTATCAGACAGGGCTGGATGTAGGAACGCTTTCAAGCTTGGCATTGCAGAGAAAGCTATGGATATTG CTTCTTTTGGGATAGTGATTATAACGAGGAAGTGTTTCAAGAATCCTTATACCATTGAGGAGCTGCAGTTTTTCTCCGGC AAGAAGAATTTGGTCCCAATATACTTTGATTTGAGTCCTGCTGATTGTCTTGTCAGGGATATAATTGAGAAAAGGGGTGA GCTTTGGGAAAAACATGGAGGGGATCTTTGGTTATTGTATGGTGGGTTGGAACAGGAGTGGAAATATGCGGTTCATGCAC TATCTCGGATTGAAGAATGGAAGTTGGAAGCTCAGGATGGATATTGGAGAGATTGCATACTGAGGGCTGTCACATTATTG GCAATGAGACTAGGCAGAAGAAGTGTTGCTGAGCATTTGACAAAATGGAGAGAAAAGGTGAAGGAAGAGGAGTTACCTTT CACTCGCAATGAGAATTTTATTGGCAGAAAGAAAGAGCTTTCTCAGCTGGAATTTATGCTTTTTGGTGATGTTACCGGAG ATTCAAAGCAAGACTATATTGAGCTTAAGGCGAGACCGAAGAGAAGGCATTTGACAATCAATCGAGGTAAGAGTAGTGTG CTTGATCAAAGACATATGGGACATGGTGATGGAAGTAGGGAGCAAAAAGAACAAGTTCTATGGAAGGAGTCAGAAAAAGA GATTGAGATGCAAAGTGTTGAATTTTCTCAGAGGCCCCATCGTCCAAGGCTCAAACGTGGTGGAAAGTATTCTAGAAGAA AAAGAGGAATGAATATTTTGTATGGGAAAGGGATTGCCTGTGTATCAGGAGATTCAGGAATTGGAAAAACTGAACTCATT CTTGAGTTTGCTTACAGATTTCACCAGAGATACAAAATGGTTTTATGGATAGGAGGGGAGAGCAGGTATATAAGGCAAAA TTATCTAAACCTCAGGTCCTTTTTAGAAGTTGATGTGAGTGTTGAGAATAGCTTGGAGAAAACTCGGATAAGAGGATTTG AAGAGCAGGAAGAAGCAGCAATTTCTCGAGTTCGCAAAGAGCTGATGAGAAACGTTCCATATCTCGTGATCATTGATAAC TTGGAGAGCGAAAATGATTGGTGGGATCACAAACTTGTAATGGATCTTCTCCCTCGTTTTGGCGGAGTGACCCATGTGAT CATATCTACACGCCTTCCTCGCATCATGAACTTGGAACCTTTGAAGCTCTCGTACTTATCTGGAGTTGAAGCAATGTCTC TAATGCTGGGAAGTGGCAAGGACTATCCAGTTGCAGAGGTTGATGCTCTGAGATCTATTGAAGAGAAGCTTGGAAGGTTA ACTTTGGGCCTAGCTATTATTGGTGGAATTTTATCCGAGTTGCCGATAACTCCAAGCAGGCTCTTGGACACCATAAACAG AATGCCATTGAAGGAAATGTCATGGAGCGGTAAAGAAGCTCAATCACTCAGGCAGAACACTTTCCTTCTTCAACTCTTCG ATGTTTGTTTCTCAGTATTTGATCACGCAGATGGCCTGAGGAGCTTGGCAACGCGAATGGTGCTGGTAAGTGGATGGTTT GCACCTGGTGCGATTCAAATTTCATTGTTGGCACTCGCTGCGTACAAGATACCAGAAAAGCATAAGAGGACTTGTTTCTG GAAAAAATTACTGCAATGCTTGTTCACATCCTCAAACACCAAAAAAACTGAGCTAGAAGCATCTTCTCTGCTACTAAGAT TTAACATTGCAAGGAGTAGTACTAAGCAAGGATACATCCAATTCAACGAGCTCATCAAACTCTATGCGCGGAAAAGAGAT GTCACCGGATCCGCGCAGGCAATGGTTCATGCTGTTATAAGTCAAGGATCAATGTCTCAAAATCTTGAGCATTTATGGGC TGCTTGCTTTCTGCTATTTGAATTTGGTCATAATCCTGCAATTGTTGAGCTCGAGGTTTCTGAGGTTTTACTTCTCGTTA AAAAAGTGGTTCTGCCTCTCGCAATTCACACTTTCATCACATACTCGCGATGCAGCGCTTCCCTTGAGCTTCTGCACCTG TGCACCAACGCGCTGGAAGCTGCTGACCAAGCATTAGTTACTCCGGTCGACAAGTGGTTGGACAAATCACTTTGTTGGAG GTCCATAAAAACTAATGCTCAGTTGAATCCTTGTCTTTGGCAAGAGCTGGCTTTATGCAGAGCCACTGTGCTTGAGACTA GGGCCAAGCTAATGCTAAGAGGTGCACAATTTGACATAGGGGATGATCTGATCCGGAAGGCCGTTTTTATCAGGGCTTCA ATTTGTGGTGAAGATCATCCCGATACCATATCCGCGCGTGAAACATTGAGCAAACTCACCAGACTAACTGCAAGTGTTCA AATTCATGCTTGAGTTTATTAG
CDS sequence (LotjaGi4g1v0428300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTCAAGAAGAGAGTTCCACTTTTGGACCATTGACAGCAATGAGTTCAAGGAACATGTCATCATCATCTTCAGC ATTTTTTTCAGCAAATCAATCACCATTCTTCTCTCCAAGAACATCATCATGTCATTTATCAGAGACTTTGAGACCTGATA CACCAAGTGGAAGAATTCATATAGATGCTGCTGCTCCTCCCAGCACCAGTTCAGTGATTCCAGAACCAAAGTCTCTAGTA AATGCTGGATTTTCCTTCTCTGAGGTGGCTGCATCAGGTGATTTGCAGAAACTTGATCGAATATCTTCTTCTGTTGGCAA TGGCATCTCCAGTAGCACCGTATCTGGTTACTGCCATCCCTACGACGATAGTTGTTCTGGAACGAAAGAGAAGCGAAGTA AGAGAGGAAGAAACCAAAGAACATCATCAACACCGGGTTCCAGATCGATTTCTTCTTACAGACTGAAGAGTTGTGATGTC TTCATAGGATTACATGGTCGTAAACCTCCTCTACTAAGATTCGCCAATTGGCTCCGCGCCGAGTTGGAAATTCAAGGCAT CAGTTGCTTTTTATCAGACAGGGCTGGATGTAGGAACGCTTTCAAGCTTGGCATTGCAGAGAAAGCTATGGATATTGCTT CTTTTGGGATAGTGATTATAACGAGGAAGTGTTTCAAGAATCCTTATACCATTGAGGAGCTGCAGTTTTTCTCCGGCAAG AAGAATTTGGTCCCAATATACTTTGATTTGAGTCCTGCTGATTGTCTTGTCAGGGATATAATTGAGAAAAGGGGTGAGCT TTGGGAAAAACATGGAGGGGATCTTTGGTTATTGTATGGTGGGTTGGAACAGGAGTGGAAATATGCGGTTCATGCACTAT CTCGGATTGAAGAATGGAAGTTGGAAGCTCAGGATGGATATTGGAGAGATTGCATACTGAGGGCTGTCACATTATTGGCA ATGAGACTAGGCAGAAGAAGTGTTGCTGAGCATTTGACAAAATGGAGAGAAAAGGTGAAGGAAGAGGAGTTACCTTTCAC TCGCAATGAGAATTTTATTGGCAGAAAGAAAGAGCTTTCTCAGCTGGAATTTATGCTTTTTGGTGATGTTACCGGAGATT CAAAGCAAGACTATATTGAGCTTAAGGCGAGACCGAAGAGAAGGCATTTGACAATCAATCGAGGTAAGAGTAGTGTGCTT GATCAAAGACATATGGGACATGGTGATGGAAGTAGGGAGCAAAAAGAACAAGTTCTATGGAAGGAGTCAGAAAAAGAGAT TGAGATGCAAAGTGTTGAATTTTCTCAGAGGCCCCATCGTCCAAGGCTCAAACGTGGTGGAAAGTATTCTAGAAGAAAAA GAGGAATGAATATTTTGTATGGGAAAGGGATTGCCTGTGTATCAGGAGATTCAGGAATTGGAAAAACTGAACTCATTCTT GAGTTTGCTTACAGATTTCACCAGAGATACAAAATGGTTTTATGGATAGGAGGGGAGAGCAGGTATATAAGGCAAAATTA TCTAAACCTCAGGTCCTTTTTAGAAGTTGATGTGAGTGTTGAGAATAGCTTGGAGAAAACTCGGATAAGAGGATTTGAAG AGCAGGAAGAAGCAGCAATTTCTCGAGTTCGCAAAGAGCTGATGAGAAACGTTCCATATCTCGTGATCATTGATAACTTG GAGAGCGAAAATGATTGGTGGGATCACAAACTTGTAATGGATCTTCTCCCTCGTTTTGGCGGAGTGACCCATGTGATCAT ATCTACACGCCTTCCTCGCATCATGAACTTGGAACCTTTGAAGCTCTCGTACTTATCTGGAGTTGAAGCAATGTCTCTAA TGCTGGGAAGTGGCAAGGACTATCCAGTTGCAGAGGTTGATGCTCTGAGATCTATTGAAGAGAAGCTTGGAAGGTTAACT TTGGGCCTAGCTATTATTGGTGGAATTTTATCCGAGTTGCCGATAACTCCAAGCAGGCTCTTGGACACCATAAACAGAAT GCCATTGAAGGAAATGTCATGGAGCGGTAAAGAAGCTCAATCACTCAGGCAGAACACTTTCCTTCTTCAACTCTTCGATG TTTGTTTCTCAGTATTTGATCACGCAGATGGCCTGAGGAGCTTGGCAACGCGAATGGTGCTGGTAAGTGGATGGTTTGCA CCTGGTGCGATTCAAATTTCATTGTTGGCACTCGCTGCGTACAAGATACCAGAAAAGCATAAGAGGACTTGTTTCTGGAA AAAATTACTGCAATGCTTGTTCACATCCTCAAACACCAAAAAAACTGAGCTAGAAGCATCTTCTCTGCTACTAAGATTTA ACATTGCAAGGAGTAGTACTAAGCAAGGATACATCCAATTCAACGAGCTCATCAAACTCTATGCGCGGAAAAGAGATGTC ACCGGATCCGCGCAGGCAATGGTTCATGCTGTTATAAGTCAAGGATCAATGTCTCAAAATCTTGAGCATTTATGGGCTGC TTGCTTTCTGCTATTTGAATTTGGTCATAATCCTGCAATTGTTGAGCTCGAGGTTTCTGAGGTTTTACTTCTCGTTAAAA AAGTGGTTCTGCCTCTCGCAATTCACACTTTCATCACATACTCGCGATGCAGCGCTTCCCTTGAGCTTCTGCACCTGTGC ACCAACGCGCTGGAAGCTGCTGACCAAGCATTAGTTACTCCGGTCGACAAGTGGTTGGACAAATCACTTTGTTGGAGGTC CATAAAAACTAATGCTCAGTTGAATCCTTGTCTTTGGCAAGAGCTGGCTTTATGCAGAGCCACTGTGCTTGAGACTAGGG CCAAGCTAATGCTAAGAGGTGCACAATTTGACATAGGGGATGATCTGATCCGGAAGGCCGTTTTTATCAGGGCTTCAATT TGTGGTGAAGATCATCCCGATACCATATCCGCGCGTGAAACATTGAGCAAACTCACCAGACTAACTGCAAGTGTTCAAAT TCATGCTTGA
Protein sequence (LotjaGi4g1v0428300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTQEESSTFGPLTAMSSRNMSSSSSAFFSANQSPFFSPRTSSCHLSETLRPDTPSGRIHIDAAAPPSTSSVIPEPKSLV NAGFSFSEVAASGDLQKLDRISSSVGNGISSSTVSGYCHPYDDSCSGTKEKRSKRGRNQRTSSTPGSRSISSYRLKSCDV FIGLHGRKPPLLRFANWLRAELEIQGISCFLSDRAGCRNAFKLGIAEKAMDIASFGIVIITRKCFKNPYTIEELQFFSGK KNLVPIYFDLSPADCLVRDIIEKRGELWEKHGGDLWLLYGGLEQEWKYAVHALSRIEEWKLEAQDGYWRDCILRAVTLLA MRLGRRSVAEHLTKWREKVKEEELPFTRNENFIGRKKELSQLEFMLFGDVTGDSKQDYIELKARPKRRHLTINRGKSSVL DQRHMGHGDGSREQKEQVLWKESEKEIEMQSVEFSQRPHRPRLKRGGKYSRRKRGMNILYGKGIACVSGDSGIGKTELIL EFAYRFHQRYKMVLWIGGESRYIRQNYLNLRSFLEVDVSVENSLEKTRIRGFEEQEEAAISRVRKELMRNVPYLVIIDNL ESENDWWDHKLVMDLLPRFGGVTHVIISTRLPRIMNLEPLKLSYLSGVEAMSLMLGSGKDYPVAEVDALRSIEEKLGRLT LGLAIIGGILSELPITPSRLLDTINRMPLKEMSWSGKEAQSLRQNTFLLQLFDVCFSVFDHADGLRSLATRMVLVSGWFA PGAIQISLLALAAYKIPEKHKRTCFWKKLLQCLFTSSNTKKTELEASSLLLRFNIARSSTKQGYIQFNELIKLYARKRDV TGSAQAMVHAVISQGSMSQNLEHLWAACFLLFEFGHNPAIVELEVSEVLLLVKKVVLPLAIHTFITYSRCSASLELLHLC TNALEAADQALVTPVDKWLDKSLCWRSIKTNAQLNPCLWQELALCRATVLETRAKLMLRGAQFDIGDDLIRKAVFIRASI CGEDHPDTISARETLSKLTRLTASVQIHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 987 | 987 | 0.0 | – | |
PANTHER | 1 | 987 | 987 | 0.0 | – | |
MobiDBLite | 1 | 27 | 27 | - | – | |
Phobius | 1 | 711 | 711 | - | – | |
Gene3D | 122 | 272 | 151 | 1.4E-9 | ||
MobiDBLite | 123 | 150 | 28 | - | – | |
SUPERFAMILY | 156 | 254 | 99 | 3.92E-7 | ||
SUPERFAMILY | 337 | 666 | 330 | 1.62E-13 | ||
Gene3D | 452 | 598 | 147 | 4.8E-11 | – | |
SMART | 461 | 615 | 155 | 0.0025 | ||
Phobius | 712 | 734 | 23 | - | – | |
Phobius | 735 | 989 | 255 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0428300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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