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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0437100 |
| Transcript ID | LotjaGi4g1v0437100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase, putative; TAIR: AT5G46290.1 3-ketoacyl-acyl carrier protein synthase I; Swiss-Prot: sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase I, chloroplastic; TrEMBL-Plants: tr|A0A0L9TGW5|A0A0L9TGW5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0437100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81008572..81011220) extracted from Lotus japonicus Gifu genome v1.2.
CTGTATATACTTGGTCATGGTTGTTATATCAGTACCTGAAACATGTGGTATCTGATTTTTTTTGGATACTTCAAACATAC TTTTAATGTTGAAGTTTTTTATTTTTCTTGTACCGATACAAGTAGCATAATTAGGTCAAATGATACTATTGTAAGTTTGT AACTCTTAGAACTAATTAACTTATAATATTATTAATGCCATTGATTTTATTTCAGTATCTTGTATTTTGAATCTTCTGAC TTGCATTGCAGCCCCGAAATGCAGAACTATTAAGGCCACAGCTTCTCCAACTGCAGCAGCAGCTCCTAAAAGAGAACAAG ATCCCAAAAAGCGAGTAGTAATAACAGGAATGGGGCTTGTTTCCGTCTTTGGCAGTGACATTGATACATTTTACAACAAG CTTCTTGCGGGAGAAAGTGGGATAAGTGTAATAGATAGGTTTGACCCCTCAAAATTCTCTGTCCGTTTTGGTGGCCAGAT ACGTGATTTCTCTTCAGAAGGTTACATTGATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTG CAGGCAAGAGGGCTCTTGATGATGCCAACCTTGGACAGGAAGCGCTTAAGAATGTAAGTTTCAGTGTTTTTTTGAAATTA CATTGCAATGACTAGTTGCCTAACTTATGAGTTATGATTGATACCAAGCCCTACAAATTTCATGAATCAACTATCCCAAA AGTTTAAACTGTTGGATGAAGGCACATGAATGATTCTATATTATACTTCTAACAGCCACTTGGGCAAGATCCCATTGAGC ATGAAGCGTAGACACTGCCAATGCATAAGCTCACTTACCATGTGCTGAAATTTAACTTTTTATGAGAATGACAGGGGTAT CAAACTATAGACTATGCAGTCATAAGTCATAACTTTGATATCATGTCATTAACCAATTTTCCTAAAAGCTTAAGTTATTG GGAGAAGATAGATGAATGATTTTATATTATAGTTCTAACAATAGATGCATTGTCTTTCTAACAGTTGGACAAAACAAGAA TAGGATCTCTAGTTGGAACAGGAATGGGAGGTTTAACAGCTTTCAGCACTGGTGTGGGAGCTCTTATAGAGAAGGGATAT AAGAAAATGTCTCCATTTTTCATTCCCTACTCCATCACCAACATGGGTTCTGCTTTGTTGGCTATAGACACTGGCCTAAT GGGTCCCAATTATTCCATTTCCACTGCTTGTGCAACAGCAAATTACTGCTTTTATGCAGCTGCTAATCATATCAGAAGAG GTGAAGCAGATATCATGGTGGTTGGTGGGACTGAAGCTGCAATAATGCCTACTGGTGTTGGAGGCTTCATTGCTTGCAGG GCTTTGTCTCAGAGGAATGAGGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTCATGGGTGA AGGCTCTGGCGTGCTGGTAGAACCTGAAACTGAAAATTTTCTTTATCTTTGATTTACCTAATGAATTTCCAATGCTGAGA ACTTAATTTTCTTTCACTGAGTAAAGATAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCACGATAATAGCAGAA TATCTGGGGGGTGCCATAACTTGTGATGCTCATCACATGACTGATCCAAGGTCGGATGGACTTGGAGTTTCATCTTGCAT AAGGAAGAGTTTACAAGATGCTGGGGTTTCCCCTGAAGAGGTAAGAAATAGAGAGTAGTAGTACCATGTATCAGTATCAA AATTTCCAGTCCTCTAAAATCACTTCAGATTCGGATTTAGATTCCATGCAGCCAGGGGAATCCGCATTCCCGCAGTCAAA CATTTTGAGTCATCGGAGGCTCACATTCCGAGTTACTATTTCACGTTATTTATTATAATTAAAACTGTGAAAAGCTGATT AATATCAAATGACTTCAGATATTTGACTGCGTGAATGTGGGATTTCCGTGAGAGGGAATCCAAATCCTTTAGATTCTCAT GTTTTTGGCTAATTTCTTAATTGTATTTTGTACAGGTGAACTATATCAATGCTCATGCCACTTCAACACTGGCAGGTGAC TTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCAGAATTGAAAATGAATGGCACTAAGGTAAGAAATTG ATTTACTTTTGAATATTTCAGAACTTGACCTTGAAAATTGAATCTTGTTGTTACATTTTTGTCCTGATTTCAGTCAATGA TTGGTCATGGTCTTGGGGCTTCTGGTGGTTTGGAAGCTATAGCAACTATCAAAGCGATAACAACTGGCTGGTTGCATCCA ACCATTAACCAAGATGTACTTTCCTCAGCTATACATTCATCGTATTAATCAATTATGTTTTATTTTATTGATTCCTATTG TAACTCTAATTTTCTCATTTTTTCCTCAGAACATTGAGGAGGATGTTACAATTGACACTGTCCCTAATGTCAAGAAGCAG CATGAAGTTAATGTTGGTATGTACTATCTCTTTGAAGTTTGTGCAAATTGTGAGAACAATGTAAAAGCCCATGTTTCTGA TCTTCACTTTCCTTTCTGCAGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTAGTTGTCTTTGCTCCATTC AGGCCCTAA
CDS sequence (LotjaGi4g1v0437100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTTGTTTCCGTCTTTGGCAGTGACATTGATACATTTTACAACAAGCTTCTTGCGGGAGAAAGTGGGATAAGTGT AATAGATAGGTTTGACCCCTCAAAATTCTCTGTCCGTTTTGGTGGCCAGATACGTGATTTCTCTTCAGAAGGTTACATTG ATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTGCAGGCAAGAGGGCTCTTGATGATGCCAAC CTTGGACAGGAAGCGCTTAAGAATTTGGACAAAACAAGAATAGGATCTCTAGTTGGAACAGGAATGGGAGGTTTAACAGC TTTCAGCACTGGTGTGGGAGCTCTTATAGAGAAGGGATATAAGAAAATGTCTCCATTTTTCATTCCCTACTCCATCACCA ACATGGGTTCTGCTTTGTTGGCTATAGACACTGGCCTAATGGGTCCCAATTATTCCATTTCCACTGCTTGTGCAACAGCA AATTACTGCTTTTATGCAGCTGCTAATCATATCAGAAGAGGTGAAGCAGATATCATGGTGGTTGGTGGGACTGAAGCTGC AATAATGCCTACTGGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAGGACCCCAAGAAGGCTTCAA GACCATGGGACAAAGATCGTGATGGTTTTGTCATGGGTGAAGGCTCTGGCGTGCTGATAATGGAGAGCTTGGAGAGTGCA ACAAAAAGGGGAGCCACGATAATAGCAGAATATCTGGGGGGTGCCATAACTTGTGATGCTCATCACATGACTGATCCAAG GTCGGATGGACTTGGAGTTTCATCTTGCATAAGGAAGAGTTTACAAGATGCTGGGGTTTCCCCTGAAGAGGTGAACTATA TCAATGCTCATGCCACTTCAACACTGGCAGGTGACTTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCA GAATTGAAAATGAATGGCACTAAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGTTTGGAAGCTATAGCAACTAT CAAAGCGATAACAACTGGCTGGTTGCATCCAACCATTAACCAAGATAACATTGAGGAGGATGTTACAATTGACACTGTCC CTAATGTCAAGAAGCAGCATGAAGTTAATGTTGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTAGTTGTC TTTGCTCCATTCAGGCCCTAA
Protein sequence (LotjaGi4g1v0437100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLVSVFGSDIDTFYNKLLAGESGISVIDRFDPSKFSVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCLVAGKRALDDAN LGQEALKNLDKTRIGSLVGTGMGGLTAFSTGVGALIEKGYKKMSPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATA NYCFYAAANHIRRGEADIMVVGGTEAAIMPTGVGGFIACRALSQRNEDPKKASRPWDKDRDGFVMGEGSGVLIMESLESA TKRGATIIAEYLGGAITCDAHHMTDPRSDGLGVSSCIRKSLQDAGVSPEEVNYINAHATSTLAGDLAEVNAIKQVFKDTS ELKMNGTKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDNIEEDVTIDTVPNVKKQHEVNVAISNSFGFGGHNSVVV FAPFRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 401 | 401 | 0.0 | – | |
| PIRSF | 1 | 406 | 406 | 9.1E-184 | ||
| TIGRFAM | 1 | 401 | 401 | 1.1E-154 | ||
| SUPERFAMILY | 1 | 245 | 245 | 8.44E-64 | ||
| Gene3D | 1 | 248 | 248 | 5.5E-71 | ||
| Pfam | 1 | 240 | 240 | 6.1E-51 | ||
| PANTHER | 1 | 405 | 405 | 2.2E-271 | ||
| PANTHER | 1 | 405 | 405 | 2.2E-271 | – | |
| SMART | 4 | 406 | 403 | 6.0E-11 | ||
| ProSitePatterns | 148 | 164 | 17 | - | ||
| SUPERFAMILY | 208 | 402 | 195 | 2.27E-60 | ||
| Pfam | 249 | 361 | 113 | 1.2E-31 | ||
| Gene3D | 250 | 393 | 144 | 7.5E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0437100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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