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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0000100 |
| Transcript ID | LotjaGi5g1v0000100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G16830.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830; TrEMBL-Plants: tr|V7BY36|V7BY36_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0000100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11562..15800) extracted from Lotus japonicus Gifu genome v1.2.
GTTCGCTGAAGAAAAACAATTTGGACGGTGGCCGCCGCCATCTCCTCCTCCTCCATCCAGCGTCATCAAATGATATGGAG TCGGTTTGGATTAGGAAGGCAAATGAAGAAGATGATGATGGTTAGATTGAGATTGAGAGCACAACAAACACACAAGACAG TGACTGCTCCTGTTTCATATTCATATTCATATTCATATTCATATTCATATTCAAGTGAAACGAAAAGGGAGAATGTGCGT TCTTCTGATTTGATTGCTCTCTCTTGCTTCTTCTGGTCTTCCCAACGCCGCCGCGATCACCAGTCCGTCACCGTCGACCA CATGGTCCCTGTGCTTGGTCGCCTCACTCGCCGCCACAAAACCCTCCAAGCCATTCTCCTTCAATTGGAATCCATAGGCT GTATCCTCACCAAAAATCCTAATTCGTTCTTGCTCTTGTTGAGGATTTTATGGCGAGCAGGTATGCATGCCATGTTCTTC CAAGCTTATCACCAAATGCAATCTTACGGTTTTGTTCCCAATACATTTGCTCGTAATTTGTTTATGGATGCTCATTTTAG GATTGGCAATCTCCATCTTGCTTTAACTGTTTTTCAACAAATTCAACCCCCTAATTTCTTCACCTTTGACATTACCCTTT TTCATCTTTCCAACTTAACTACTGATCTCACTCTAATCACTCCTATTCTCAAACGTATGTTGAGGATGCATTACTATCCC AATGCTAACACCTTTCACTCCCTTCTCAATGCTTTCTTTAAGATGGATGCATTGCTCGAGGCTTATCAGCTCTTGGGTCT CATGGTTGTTTTAGGGATCCAATTCTCCGTCAATGTTTGGACTATTCTCATCCATAAGCACTGTCAATTGGGTATACTTG ATGTTGCCAACAAACTGTTGCAAAACATGCTTCATACAGGTTGTTCTCCTAATGTTGTAACCTATACCACCTTGATTAAG GCATATATGGAATCCAACAGGGTAACTGATGCCTCTAATTTGTTCAATCACATGCGTTCTGCCGGCCATACTCCGGATTT AGTTCTTTGGAATGTGTTAATTGATTGCCATTCAAAGGCTGGAAGGCACCAGGATGCACTTGGAGTTTTTCGCAGCTTGT CAAAACAAAACATACAACCTGATCCTTATACCCTTACTTCATGGTTGTCTATGATCTGTCAGTCTAGAATGTTTGATCTC TTACCCAAACCAGCTCTAGTCTTCAGATATATAGATCCTGATTTAGTTTTCTGTAATGCTCTGCTAAGCTATTTAGTTAA GGCTGGGCATCCTTCTGACGCTGCTGAGTTCTATGATCTTATGATTGAATTAGGTTTTGCGCCAGATAAGTATAGTTTTG CTGTATTACTAAGTGCACTTTGTGCTGCGGGGAAAATTTATGAAGCAGTTAAAGTGTACCGTGGTGGTGTTATGAGTTCT CAAGAAACTGATGCACGCATCCATACTGTAATAATAGTTGAGCTTATAAAGGCTGGTAAGTATCTCATGGCTGCTACTGT TTTTAAGCAAGCAGTGGTGAGAAAATATCCACTTGACAATGTAGCATATGCAGTTGGCATATGTGCACTTCTTAGAAGTG GAAGAACCCCGGATGCTTGCACATTTTACGACCAAATGAAGGAGAATGGTCTGAAACCTAATGCTCATACATGTAATATG ATGCTTTTCACTTTTTATAAAGAAAAAGACCTTCAAAAGGTTAATCAGATGCTAAAAGAGATGATTGGTTCAAGGATAGA GTTGAGTGACAGAAATTTCTTAAACTTATGTAACTTTCCATGTAGATCAGATGCTTATTATTCTACATCAAACTTGTTGG CTGAGATGAGAGAGATGGGTTTATTACCTGCCAAGGCTTTGCACGCCTTAAGCTCTGACAAGTATGCTGAAAGCTTAGAA GAAAAATATGAACATTGTGCAGAAGTTAATACAGAACTGAACCTAGTTCTAGATTCATCCAGTTCTGAAGATCTGTCAGA TGTTGCTGCTTCAGTTGGCTGAGTTATCATGCTTACCATGTGGCGGACCTGTCTAGCTGGAAGTTGGAGTTACATCATTA ATCACTCATCTCTGTAAGTTCCATTTTATTTAATAACATTTGAAAATTAATGGACTTGTTGAAAATTATAAATTATAATA CATGTGATCAGATGAATTATCACATTTCAAAACAGTGAATGCTTTCTTCGAGGAAGCAGAAGCTACACTTAAGATCTTGA TCTTCTAAGGTAAAAGGCGAGCTAGTGCTGAAAAAACACTATGGAGAAGAGGGCGGAGATGATATTGATTATGATCGGAG GCTGCTAAGCTCTTCTGATGAATACACTTTTGGAAAGGTATGTATCATATTTACAATTTGACCTTTTTGTCCAATCATTT TCTGTCTTCTTTTGGTTACATTTTTGTCTTCTACTTATCATGAACCAACTATCCCAAAATCTTAGTGATTGGTGAAGACA CGTGAATGGTTTTATAGTGCACTCATGAATGGTTTTATAGTATACCCTAACCTGTCCCGTCACGCAAGAGCCAAGTAGGC TCCACGTCCTGTTTGAAAATATTACTTTCATTGATCTTTGGTATTATGCTTGCAGTGTTTCTTTATGCTGCCCTTACTGA TGTGCTTTTCTTCAACCCTTTACTTCTATGATGATTTTTATTTCATAATCTCAGATTCCAAATATGTCAGCCACAATACC TTCACAGTCACTACTTCCACGGATGCAGGTTTGTCTTTGATGTTCTCTGCCTAAGTTGTATTCTCAAAAGGCCTGGTTGG TTTTATTGAACTATAAATTTTGATGGATTTGAGTGTAACATGAAGAGATGTATGAGGAACTTATGGTGAAGACCTTTGAT ATACTGGGGATGTTTACTAACTCCATAGTTTAGTCCTTTTAGAGTTTAGTCACTATTTTGCTTGACTTAATTCCATTCAT GCACTTTCTCCATGCTAGCCAAACACATTTTGTTTCAAAAGTTTGCATTTGAAAAAAAAATATTGGAATCTTGCAACCAC CCCAAACACGCCCTTAATTTTAGGAGGTGTTTTGATTTGCAATTTATGAATTGATATTTTGATTTTGGCAAATTTTTAGT TGTCTTTTATTTTGTGATATTTTATGACAAAGAACTATCATTATGACATACTTTCATTTTGCATAAAATTTGGCTGGTCT TCCCTGACGCACTTCAAGTTGGTCATTCTTTTTTTATCTCATCTTGCTTTTTGGTTAACCCTTGATCACATGAGGATAAC AACAGACTGAAACTTGCTCTACTTTTTTTATTTCCTCAGTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATGCTTC TCAAATGTTGAATGATCAAAGTATGAACTTTGTTCCTCAATGCCTTTTTTTTTGTCGAACTCAGTGCCTGAAATCTTATT TTATCATTAGTTAGTTGTGGATCCTGTTGTGTTTAGTCAACCCTCATTAAAAGGGTTATGATGCAATATGAAGTGTCATT AATTCTATGAGATTAACTTTCATGCAGTTAGTGTCGAATTCTTTTATACTGACATTCAATCGTTTCATATCACATCAGCT TAAATGCTTTTAAGAGGTTACATGACTTCTTATTTTGATTAAATTTATTTTTTAACTTGGAAACAACTATTGGATGCCAG TGTAAAGAAGTTTTACGCTGATAGTACATGCACATTAAATCCATTCTATATTCTACACGTGTGTGTGTCTAATAGATGGG TTTTACATTGCAGTGTTTAACATGGGAGGTGGCAATCCCAGTGGTATGATGCCCATACAGCAGCAGCAGCAGCAGCAACA TGGTTCACAAGGTGCATTTGGTGGCATGGCATCAAAAGCTCAGAATCTACAATCTGGTATGGTGACACTTCAGAACACAC AACAGAATCATCACAATTTCTCTCAACAAAGGCAGCAAAATCAACAGTGATTATGAGTGGGCATGGTGGGTTCAGTTTAG AATGAACTGAATCATGTGTTGCCCTTATGATGTGCTTTACAAATACTGAACCAAACAGTTTAAATATAGAGTAGTAAAGA AGAACTGAATTGAAAAGGGAGAAGTTATTCTGGTTTGCTTCTGTTAGCTGGTTATTTTTAAGAAAAAAAAAAAAATAGAT ATGATTTGACCACAGGTTATTGGGTTTCATCTGATTTAATATGAATCGAATAACTGAAAAGAAAAAAAACATGGGATGA
CDS sequence (LotjaGi5g1v0000100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATGGAGTCGGTTTGGATTAGGAAGGCAAATGAAGAAGATGATGATGGTTAGATTGAGATTGAGAGCACAACAAAC ACACAAGACAGTGACTGCTCCTGTTTCATATTCATATTCATATTCATATTCATATTCATATTCAAGTGAAACGAAAAGGG AGAATGTGCGTTCTTCTGATTTGATTGCTCTCTCTTGCTTCTTCTGGTCTTCCCAACGCCGCCGCGATCACCAGTCCGTC ACCGTCGACCACATGGTCCCTGTGCTTGGTCGCCTCACTCGCCGCCACAAAACCCTCCAAGCCATTCTCCTTCAATTGGA ATCCATAGGCTGTATCCTCACCAAAAATCCTAATTCGTTCTTGCTCTTGTTGAGGATTTTATGGCGAGCAGGTATGCATG CCATGTTCTTCCAAGCTTATCACCAAATGCAATCTTACGGTTTTGTTCCCAATACATTTGCTCGTAATTTGTTTATGGAT GCTCATTTTAGGATTGGCAATCTCCATCTTGCTTTAACTGTTTTTCAACAAATTCAACCCCCTAATTTCTTCACCTTTGA CATTACCCTTTTTCATCTTTCCAACTTAACTACTGATCTCACTCTAATCACTCCTATTCTCAAACGTATGTTGAGGATGC ATTACTATCCCAATGCTAACACCTTTCACTCCCTTCTCAATGCTTTCTTTAAGATGGATGCATTGCTCGAGGCTTATCAG CTCTTGGGTCTCATGGTTGTTTTAGGGATCCAATTCTCCGTCAATGTTTGGACTATTCTCATCCATAAGCACTGTCAATT GGGTATACTTGATGTTGCCAACAAACTGTTGCAAAACATGCTTCATACAGGTTGTTCTCCTAATGTTGTAACCTATACCA CCTTGATTAAGGCATATATGGAATCCAACAGGGTAACTGATGCCTCTAATTTGTTCAATCACATGCGTTCTGCCGGCCAT ACTCCGGATTTAGTTCTTTGGAATGTGTTAATTGATTGCCATTCAAAGGCTGGAAGGCACCAGGATGCACTTGGAGTTTT TCGCAGCTTGTCAAAACAAAACATACAACCTGATCCTTATACCCTTACTTCATGGTTGTCTATGATCTGTCAGTCTAGAA TGTTTGATCTCTTACCCAAACCAGCTCTAGTCTTCAGATATATAGATCCTGATTTAGTTTTCTGTAATGCTCTGCTAAGC TATTTAGTTAAGGCTGGGCATCCTTCTGACGCTGCTGAGTTCTATGATCTTATGATTGAATTAGGTTTTGCGCCAGATAA GTATAGTTTTGCTGTATTACTAAGTGCACTTTGTGCTGCGGGGAAAATTTATGAAGCAGTTAAAGTGTACCGTGGTGGTG TTATGAGTTCTCAAGAAACTGATGCACGCATCCATACTGTAATAATAGTTGAGCTTATAAAGGCTGGTAAGTATCTCATG GCTGCTACTGTTTTTAAGCAAGCAGTGGTGAGAAAATATCCACTTGACAATGTAGCATATGCAGTTGGCATATGTGCACT TCTTAGAAGTGGAAGAACCCCGGATGCTTGCACATTTTACGACCAAATGAAGGAGAATGGTCTGAAACCTAATGCTCATA CATGTAATATGATGCTTTTCACTTTTTATAAAGAAAAAGACCTTCAAAAGGTTAATCAGATGCTAAAAGAGATGATTGGT TCAAGGATAGAGTTGAGTGACAGAAATTTCTTAAACTTATGTAACTTTCCATGTAGATCAGATGCTTATTATTCTACATC AAACTTGTTGGCTGAGATGAGAGAGATGGGTTTATTACCTGCCAAGGCTTTGCACGCCTTAAGCTCTGACAAGTATGCTG AAAGCTTAGAAGAAAAATATGAACATTGTGCAGAAGTTAATACAGAACTGAACCTAGTTCTAGATTCATCCAGTTCTGAA GATCTGTCAGATGTTGCTGCTTCAGTTGGCTGA
Protein sequence (LotjaGi5g1v0000100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIWSRFGLGRQMKKMMMVRLRLRAQQTHKTVTAPVSYSYSYSYSYSYSSETKRENVRSSDLIALSCFFWSSQRRRDHQSV TVDHMVPVLGRLTRRHKTLQAILLQLESIGCILTKNPNSFLLLLRILWRAGMHAMFFQAYHQMQSYGFVPNTFARNLFMD AHFRIGNLHLALTVFQQIQPPNFFTFDITLFHLSNLTTDLTLITPILKRMLRMHYYPNANTFHSLLNAFFKMDALLEAYQ LLGLMVVLGIQFSVNVWTILIHKHCQLGILDVANKLLQNMLHTGCSPNVVTYTTLIKAYMESNRVTDASNLFNHMRSAGH TPDLVLWNVLIDCHSKAGRHQDALGVFRSLSKQNIQPDPYTLTSWLSMICQSRMFDLLPKPALVFRYIDPDLVFCNALLS YLVKAGHPSDAAEFYDLMIELGFAPDKYSFAVLLSALCAAGKIYEAVKVYRGGVMSSQETDARIHTVIIVELIKAGKYLM AATVFKQAVVRKYPLDNVAYAVGICALLRSGRTPDACTFYDQMKENGLKPNAHTCNMMLFTFYKEKDLQKVNQMLKEMIG SRIELSDRNFLNLCNFPCRSDAYYSTSNLLAEMREMGLLPAKALHALSSDKYAESLEEKYEHCAEVNTELNLVLDSSSSE DLSDVAASVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 240 | 240 | - | – | |
| Gene3D | 48 | 181 | 134 | 1.8E-6 | ||
| PANTHER | 63 | 377 | 315 | 1.3E-70 | – | |
| ProSiteProfiles | 116 | 150 | 35 | 8.089 | ||
| ProSiteProfiles | 151 | 185 | 35 | 6.248 | ||
| Gene3D | 182 | 281 | 100 | 3.5E-12 | ||
| ProSiteProfiles | 218 | 252 | 35 | 8.002 | ||
| Pfam | 221 | 250 | 30 | 0.44 | ||
| Phobius | 241 | 260 | 20 | - | – | |
| ProSiteProfiles | 253 | 287 | 35 | 9.92 | ||
| Pfam | 254 | 299 | 46 | 1.1E-10 | ||
| TIGRFAM | 256 | 289 | 34 | 1.0E-4 | ||
| Phobius | 261 | 650 | 390 | - | – | |
| Gene3D | 282 | 380 | 99 | 2.2E-26 | ||
| ProSiteProfiles | 288 | 322 | 35 | 11.959 | ||
| TIGRFAM | 290 | 323 | 34 | 6.3E-8 | ||
| Pfam | 322 | 370 | 49 | 3.9E-9 | ||
| ProSiteProfiles | 323 | 357 | 35 | 11.433 | ||
| TIGRFAM | 325 | 358 | 34 | 2.1E-7 | ||
| PANTHER | 388 | 492 | 105 | 1.3E-70 | – | |
| Pfam | 390 | 438 | 49 | 7.7E-11 | ||
| ProSiteProfiles | 391 | 425 | 35 | 10.764 | ||
| TIGRFAM | 395 | 426 | 32 | 6.8E-7 | ||
| ProSiteProfiles | 426 | 462 | 37 | 7.333 | ||
| Gene3D | 456 | 639 | 184 | 4.7E-18 | ||
| Pfam | 496 | 540 | 45 | 1.7E-8 | ||
| ProSiteProfiles | 496 | 530 | 35 | 10.402 | ||
| PANTHER | 496 | 600 | 105 | 1.3E-70 | – | |
| TIGRFAM | 504 | 532 | 29 | 2.1E-5 | ||
| ProSiteProfiles | 531 | 565 | 35 | 8.232 | ||
| ProSiteProfiles | 566 | 600 | 35 | 5.503 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0000100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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