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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0004700 |
| Transcript ID | LotjaGi5g1v0004700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-1; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1114563..1118839) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGCCTTATCTAAACAAGGTATGTGCATTTTTTATTATTGATGTTAGAAATTGTTCCTATGGAATCAATGAGACAGT GTAGTGTTAGTGGCTTAGTGCAACTATTTTGGGTAGCAAAAATCATCGTGCCAAAAATTCAATCTTCATAGGCAATTTGC AAGACTGCAAGGGAGATAGCAAAGCCCATCATAGCTGAACAAATTCCAAAGTACAAAATTGATTCAGTTGAATTTGAAGA ACTCAACTTGGGTTCTCTTCCACCAACTTTTCAAGGTTGATCTCTCTCTCTCTCTCTCTCTCTCGCACACACACACACAC ACACACACACACACATTGAACTACTGATTAATGTTTATGTTCATCTGAATATATATCAGGAATGAAAGTCTATAGTACTG ATGAAAAGGAGTTGATTATGGAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCATTTGGG CTGAAAGCCACAGTTCAGGTATTACATCAGTGACTTCATGAACTTTTGAAGAACAGAACAAAAAATGTGTGGTTTAATAT GAAGGGTATTTATGTTTTTAAACAATTGCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTT TAGTTCCCAGTTTTCCTTGCTTTGCCAATATTTATGTGTCTCTCATGGAAAAGGTGTGTATGATGTCAAACTCCTTAATG ACTAATTTCCATTGTACTTTTAGTGAGGGCAAAGTTGTGTTTGGATACCAATTGAGTGCAACATGAACAGATTTTCTACC CAATCAATATGTGTTTAGATACTATTTTAGTGCAATGTGAATGAACTTTCTACCCAATCAAGCTATGTTTGGATATACGT TGGCACCAGTGCAAAGGAACGTCAGCACTCACTTCGAAATAAAAACTGAACAAAAGATTCATTGGCACCAGTGTTTGAAT TTCATAGCCATTGTGTTTGGATATACGTTGGCACCGGTGTTTGAATTTCACAGTCATTCACATTGCACTAAACAGGTATC CAAACACACAGTAACAAGAGATTCATTCACTTTTTGTCTTGAAATGGCTGTGAAATTCTATTTGCGCTAATGCAAAGGAA TATCCAAACATAGCCAAAGATCCATGACATCTTGGGGACTCTTTATCACTGAAATAGTGAGCAAAAGAATAACTTCACAT AGTGTTCTTAAACACACAATCCTATTTAATGTATGTTGCATACAAATTGACCAACATGAATAGACTTTCATCATAATTCA TAAGAAGAGTTTCATTCACCTTTTATCTTGAAATGCATGCTAATGTTTGATTACACTGGTACTAATAGATATCTTGTGCG TATATATAGCTTGTGACTACATCCATGTCCCACCTTCCTGCATCCATCTCTGTAGTTATGTTCTTCTCTTTCCCTCTTCT TCTTCCCCTTTATTGTCACTTTGATTCATTGATTGCAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCA ATGTCTATTCCTGGTGTATACAGGATTGTCCAGGTAGCATATAGCACTTTCATCATGTCCTCTAAATTTTTGTGACTAGA CATTATTTTGATTGTAAGGTTTTAATATTGATTTCTTCTTCTCACTTCATTTCCTTTCAGGAACTTATAAAAGACCAGGT TGCAAAAATGTATTTGTGGCCCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGTATGTATAATATTTCTTCCTTT CATTAGTTTATAACATTAGGTGAATTTTAGAGTAGCTAATGTCACTTGGTTTTTCAGGGCCATGAAAGTGCCAGTTGGAA TCCTTCATGTGAAGGTTCTCAGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTT AAACTAACAGATGATAAACTTCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATT TAACTTGGTCGTTAAAGATCCAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGGTAAGTATCTTCAGAT GCAATTCTAGATTAAAATTGGATGTCAATATCCTTTAGGACAATTTATATTTCCGATTGAATTTTTCTCTCCGCACTAAT CAAATTTTGACCGTCATTTAAAACTATCATGTAAATTTGTACCAATGGGTGATTGGTTCAAGTGGTACATGTTTGATTCC CCTTAAACAAGATCTCAGGTTCAAGTCTTGTGGATAGAAAAAAAAACTCCCACTGGGAGAGCTAGTTCGACCAGGATGTG GATGTTTCCAACTCGAATAAGATTGTCTCATGTGAAAGATACTTGTCTTACACACACAAAATCATGTAAATTCGTAACTT TCTCACTCATGTCTTTCTTTGTGGCAATATTTCATTAGTGGGACAGGAAACTGTGACAATATTGGGGACAGGAGATCTTG ATCCTATATTTCATTGCATAATTTCCTCTTACATATTTTCAAGCATGTTCTTTACATTCTTTTGTCTATATTGGCAGCCA TTCAAGCATGTTTTTTACTTTCATTGCATAACAGTTTCCTCTTACAAATTTTCAAGCATGTTTATACTTTCTTTTGTCTA GATTGGCAAGAATGAGAGGATGGGTATGAATGTCATACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTC TTAATTTACTCAAGACAATGGACCCTAAGGATCCTGAGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATAC AAACCTTTTAAGGGAGATGAGTTACCTCAAAATGCTCAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGC TAGTGGTGGTTTGCTTGTAATTACCATCCATGAAGCTGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGAC TGATATTTAAAGGAGAGGAGAGAAAAACCAAGGTACAATATAAGCTCATTCTGATTTTATTTATGTCATAACCAACTATC CAAAAAGCTTAAACTGTTGGGTGAAGACACATGCATAATTTTAGATTCTATTTCTAACACGAGCCTCACACAAGAGTCCA TTAGGCTTGAAGCATGAGAATGCAAATATCCACCTACTTTTAACGGAAGTTTAATTATTTTCAAAGAAGTGCTAACAATA CACTCCACATGATTGGTAAATTTTTTAAAAAGTCAATACATTTGCTTCAATTTTTGAAAAATGTATTCAAATTTTAAAAA AATAGACCAATTACTAAAAGTGTTTCTAAAAAATGTGTTAAAAAGAGTGTGTTGCTAGAATTTCTGTTTTTTTATTAGAA GGATAGGTGCAACAGTGATTGAACTTTAAACTTCTTTCCTCATACAGATTCTGAAACAATTCATGTCTAAAAGTTTATAT GATACTGTCAGAATGTCAGGGTCAGAGGAAAAGTGGATCAAATGAAATAGTCCCATTAAAATGGTAGATGAAAACTTCCA AAAACTTCAGAGGAGCCATAAAAATGTTATTTCTCTATAATTTTATGAATAACTTTATTTTCCATACAGTCCAATGAAAT AAGACTTGACTGCTATCATTATTATTAGAAATCATAAACCTTCAATTAATGGTTGAGTCCACAAAAGCCATTACTTGGAG TTGGAAAGAACCATTATCCCCACCAGTGCCACTATTTGTTAATGACACGTCTACTAAGACAATTACTATGAGAACCTCTT CACTGCATATGTTGTTTTTAAATTTGAATTTAGCTTGACCTTTCTGTAAAAACCATACAGCATGTAAAGAAAAATAGAGA CCCGAGATGGGATGAAACATTTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATATGTTGAAGTGCAAAGTG CCTCTTCAAAGTTGGGCCTATTGCATCCTAAGGTAATGATAATCTTACACCACTTTCATGAGACTAGATGGAATGGATTT TCTACAATATATGAAACTAGAGATCCATGGTTTTCATCTTATCTTGATCCTGAATCAAATTTTTCCACTTCAGTTTTTAT ACATTTTCCTTCACTTCAATTGAGGATGATAATTTCTGTTTTTTGACCTTGTATCTTCTTCTAATCAGGAACCTCTGGGC TATGTGGATATAAATTTATCTGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGG AAGGATTCAAATTGAGCTTCAGTGGAGAACTCCCTGA
CDS sequence (LotjaGi5g1v0004700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCCTTATCTAAACAAGGCAATTTGCAAGACTGCAAGGGAGATAGCAAAGCCCATCATAGCTGAACAAATTCCAAA GTACAAAATTGATTCAGTTGAATTTGAAGAACTCAACTTGGGTTCTCTTCCACCAACTTTTCAAGGAATGAAAGTCTATA GTACTGATGAAAAGGAGTTGATTATGGAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCA TTTGGGCTGAAAGCCACAGTTCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTAGTTCC CAGTTTTCCTTGCTTTGCCAATATTTATGTGTCTCTCATGGAAAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAG CTGATGCAATGTCTATTCCTGGTGTATACAGGATTGTCCAGGAACTTATAAAAGACCAGGTTGCAAAAATGTATTTGTGG CCCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAGGTTCT CAGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTTAAACTAACAGATGATAAAC TTCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAACTTGGTCGTTAAAGAT CCAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGATTGGCAAGAATGAGAGGATGGGTATGAATGTCAT ACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTCTTAATTTACTCAAGACAATGGACCCTAAGGATCCTG AGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATACAAACCTTTTAAGGGAGATGAGTTACCTCAAAATGCT CAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTACCATCCATGAAGC TGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGACTGATATTTAAAGGAGAGGAGAGAAAAACCAAGCATG TAAAGAAAAATAGAGACCCGAGATGGGATGAAACATTTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATAT GTTGAAGTGCAAAGTGCCTCTTCAAAGTTGGGCCTATTGCATCCTAAGGAACCTCTGGGCTATGTGGATATAAATTTATC TGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGGAAGGATTCAAATTGAGCTTC AGTGGAGAACTCCCTGA
Protein sequence (LotjaGi5g1v0004700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWPYLNKAICKTAREIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMEPLMKLAGNPNIIVAIKA FGLKATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGVYRIVQELIKDQVAKMYLW PKALAVPIMDPTKAMKVPVGILHVKVLRAVKLRKKDLMGASDPYVKFKLTDDKLPSKKTTVKYKNLNPEWNEEFNLVVKD PESQVLELSIYDWEQIGKNERMGMNVIPLKELTPDEPKVVTLNLLKTMDPKDPENEKSRGQLIVEALYKPFKGDELPQNA QDSNGIEKAPEGTPASGGLLVITIHEAEDVEGKHHTNPYARLIFKGEERKTKHVKKNRDPRWDETFQFMLEEPPTNERLY VEVQSASSKLGLLHPKEPLGYVDINLSDVVNNKRTNEKYHLIDSKNGRIQIELQWRTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 457 | 457 | 2.9E-267 | – | |
| ProSiteProfiles | 1 | 169 | 169 | 23.305 | ||
| Pfam | 1 | 168 | 168 | 4.3E-14 | ||
| PANTHER | 1 | 457 | 457 | 2.9E-267 | – | |
| SUPERFAMILY | 176 | 311 | 136 | 8.04E-31 | – | |
| Gene3D | 177 | 330 | 154 | 1.9E-33 | ||
| Pfam | 180 | 281 | 102 | 4.2E-23 | ||
| SMART | 181 | 281 | 101 | 3.4E-20 | ||
| CDD | 182 | 284 | 103 | 6.04102E-26 | – | |
| ProSiteProfiles | 182 | 266 | 85 | 16.495 | ||
| PRINTS | 197 | 209 | 13 | 4.6E-7 | ||
| PRINTS | 224 | 237 | 14 | 4.6E-7 | ||
| PRINTS | 246 | 254 | 9 | 4.6E-7 | ||
| MobiDBLite | 314 | 334 | 21 | - | – | |
| SUPERFAMILY | 338 | 457 | 120 | 6.85E-22 | – | |
| SMART | 339 | 438 | 100 | 1.8E-14 | ||
| Pfam | 339 | 441 | 103 | 8.7E-13 | ||
| Gene3D | 339 | 458 | 120 | 5.9E-25 | ||
| ProSiteProfiles | 340 | 423 | 84 | 10.619 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0004700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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