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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0004700 |
| Transcript ID | LotjaGi5g1v0004700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-1; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1112815..1119482) extracted from Lotus japonicus Gifu genome v1.2.
AAACTAATGACCTAATTTGACCATTAACTCAATGGTAAATAAAACAAAAGCAAAAAGTTAAGAAGCTTCAATGAATTAGC GGAAAAACTAAAAGAAGGAATGTTGGCGGAAGCACAGAACTGTTTGCAAGCATCAGCCGTAAATCAAAGTTTGCCAATTT TTCTCAATTCAGAAGGACATTTCCCTGGAGAGGGAAGGACCAAACCCAAAACCAAGCCTAAACAGGCCAAAACCCAAAAA GCCAAAATAGAAATAGAAAGCACAGTGGGACCTCTATTTATTATTCCATGGTTGATAGAGTGGTAGATATAGAAACTAAT ATTTTATTTGTTTTTTATTATTATTTATCTTGTCATTTTAATAATTTCAATTGAGTAGAAAAAGTTGTTGCTGACTCAAT TGAGTATAAATTATATTTTTAATTTATTGTAATTCTTAATAGTGATAAGAAAATAAGAATCAAAATTAATAAGAGAGATA AAAATAAAATACACATTATAGAGTTAGATTATTAGTTTTAATCCTATCAAAAATATTATTAGTTTTAATAAAATCTGAAA GATTATAGACCTTACCGACAGCAAGTGCCATGTCAGTCCATGTTCTGTGGATCAAGTGGCCGTTTATGATGGTAAAGATT GGCCACTGGTTTTAATGCACCTTTATTATTGCATTGTGTCATCATCACAATAATAGCATATACAGTTCCTTCTCTTTCCT TTCTACTTTCTTCTTTCCCAGGCTCAGAAAGTGAGTTGAGTTCACTAATCCACAACAAGTGAGTATTTGTTGAGCACGTT AAGTTTGGAAGGTTCCACTTTGGATAAACTTTCTTTTCTTTTTTTTCTTTTCTTTTCCACATTTTGTACAAATATACTTT CAGGTGGTGGTACTGTTATTTTGACCAAGATATTCAAGATGGGTATTTTGAGTACCATAGCTAGTTTTTTGGGATTTGGA ATGGGAACTTCACTTGGACTGGTGATTGGCTACTATTTTTTCATATACTTCCAACCAACACATGTCAAGGTTAGTTTCTT CAATCTCTCATTTTTCTATGTTAGGATTCAGGTTAAGCTTAACTCTACCAAAAAAACTAGCTCGTAAAACAATCCTCACT TCCAAGCTAGCTTTTTGTGTGGAGTTAGGTCTAATCTGAATTCCAAATCTCTAAACTGTTTTCTTAGTTACTGTTTCTTA AAAAATTTGGACTGCACATGTAAACTTTGAACTTTATATCCTTTTCATCCTGCTTTTGTTTGCTTTGCTGAATTATGATT TACTGCATAAGTAGCTGTTACTATTATCTTGTGTTAAGCTAACATTTTCTGGTCTTTACCTTTTGAAGATTGTCCATTCC TTCTTCTTTAGCATTTTGGAATGAGAAATAAAATTGTGTTCTTTCTGTTTTATTAATTTCTTGAAGAGTTATAAGCTGAT TCCAACTGAGTAATTTAACATTGTGAGTAGAAAGAGTTGTGTTCCCTTTTAGTTATTGTCTTACTCTTCATGCTTGATTT CAGGATCAAACAGTTCAACCTTTGGCCGAGCAAGATTCTAAAACTCTGCAACAGTTGATTCCTGAGATACCCTCTTGGAT TAAAAATCCAGACTATGATCGCGTAGGTTATTACATGGAAAATTAAAAGTGTTTATCTTGGGAACCAGAAATGCATTATA GGTTCTACACAAACTTAATAATATTTTCTCATTTGCAGCTTGATTGGCTTAATAAATTTATTGAGCATATGTGGCCTTAT CTAAACAAGGTATGTGCATTTTTTATTATTGATGTTAGAAATTGTTCCTATGGAATCAATGAGACAGTGTAGTGTTAGTG GCTTAGTGCAACTATTTTGGGTAGCAAAAATCATCGTGCCAAAAATTCAATCTTCATAGGCAATTTGCAAGACTGCAAGG GAGATAGCAAAGCCCATCATAGCTGAACAAATTCCAAAGTACAAAATTGATTCAGTTGAATTTGAAGAACTCAACTTGGG TTCTCTTCCACCAACTTTTCAAGGTTGATCTCTCTCTCTCTCTCTCTCTCTCGCACACACACACACACACACACACACAC ACATTGAACTACTGATTAATGTTTATGTTCATCTGAATATATATCAGGAATGAAAGTCTATAGTACTGATGAAAAGGAGT TGATTATGGAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCATTTGGGCTGAAAGCCACA GTTCAGGTATTACATCAGTGACTTCATGAACTTTTGAAGAACAGAACAAAAAATGTGTGGTTTAATATGAAGGGTATTTA TGTTTTTAAACAATTGCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTAGTTCCCAGTT TTCCTTGCTTTGCCAATATTTATGTGTCTCTCATGGAAAAGGTGTGTATGATGTCAAACTCCTTAATGACTAATTTCCAT TGTACTTTTAGTGAGGGCAAAGTTGTGTTTGGATACCAATTGAGTGCAACATGAACAGATTTTCTACCCAATCAATATGT GTTTAGATACTATTTTAGTGCAATGTGAATGAACTTTCTACCCAATCAAGCTATGTTTGGATATACGTTGGCACCAGTGC AAAGGAACGTCAGCACTCACTTCGAAATAAAAACTGAACAAAAGATTCATTGGCACCAGTGTTTGAATTTCATAGCCATT GTGTTTGGATATACGTTGGCACCGGTGTTTGAATTTCACAGTCATTCACATTGCACTAAACAGGTATCCAAACACACAGT AACAAGAGATTCATTCACTTTTTGTCTTGAAATGGCTGTGAAATTCTATTTGCGCTAATGCAAAGGAATATCCAAACATA GCCAAAGATCCATGACATCTTGGGGACTCTTTATCACTGAAATAGTGAGCAAAAGAATAACTTCACATAGTGTTCTTAAA CACACAATCCTATTTAATGTATGTTGCATACAAATTGACCAACATGAATAGACTTTCATCATAATTCATAAGAAGAGTTT CATTCACCTTTTATCTTGAAATGCATGCTAATGTTTGATTACACTGGTACTAATAGATATCTTGTGCGTATATATAGCTT GTGACTACATCCATGTCCCACCTTCCTGCATCCATCTCTGTAGTTATGTTCTTCTCTTTCCCTCTTCTTCTTCCCCTTTA TTGTCACTTTGATTCATTGATTGCAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGTCTATTCCT GGTGTATACAGGATTGTCCAGGTAGCATATAGCACTTTCATCATGTCCTCTAAATTTTTGTGACTAGACATTATTTTGAT TGTAAGGTTTTAATATTGATTTCTTCTTCTCACTTCATTTCCTTTCAGGAACTTATAAAAGACCAGGTTGCAAAAATGTA TTTGTGGCCCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGTATGTATAATATTTCTTCCTTTCATTAGTTTATA ACATTAGGTGAATTTTAGAGTAGCTAATGTCACTTGGTTTTTCAGGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGA AGGTTCTCAGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTTAAACTAACAGAT GATAAACTTCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAACTTGGTCGT TAAAGATCCAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGGTAAGTATCTTCAGATGCAATTCTAGAT TAAAATTGGATGTCAATATCCTTTAGGACAATTTATATTTCCGATTGAATTTTTCTCTCCGCACTAATCAAATTTTGACC GTCATTTAAAACTATCATGTAAATTTGTACCAATGGGTGATTGGTTCAAGTGGTACATGTTTGATTCCCCTTAAACAAGA TCTCAGGTTCAAGTCTTGTGGATAGAAAAAAAAACTCCCACTGGGAGAGCTAGTTCGACCAGGATGTGGATGTTTCCAAC TCGAATAAGATTGTCTCATGTGAAAGATACTTGTCTTACACACACAAAATCATGTAAATTCGTAACTTTCTCACTCATGT CTTTCTTTGTGGCAATATTTCATTAGTGGGACAGGAAACTGTGACAATATTGGGGACAGGAGATCTTGATCCTATATTTC ATTGCATAATTTCCTCTTACATATTTTCAAGCATGTTCTTTACATTCTTTTGTCTATATTGGCAGCCATTCAAGCATGTT TTTTACTTTCATTGCATAACAGTTTCCTCTTACAAATTTTCAAGCATGTTTATACTTTCTTTTGTCTAGATTGGCAAGAA TGAGAGGATGGGTATGAATGTCATACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTCTTAATTTACTCA AGACAATGGACCCTAAGGATCCTGAGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATACAAACCTTTTAAG GGAGATGAGTTACCTCAAAATGCTCAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGCTAGTGGTGGTTT GCTTGTAATTACCATCCATGAAGCTGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGACTGATATTTAAAG GAGAGGAGAGAAAAACCAAGGTACAATATAAGCTCATTCTGATTTTATTTATGTCATAACCAACTATCCAAAAAGCTTAA ACTGTTGGGTGAAGACACATGCATAATTTTAGATTCTATTTCTAACACGAGCCTCACACAAGAGTCCATTAGGCTTGAAG CATGAGAATGCAAATATCCACCTACTTTTAACGGAAGTTTAATTATTTTCAAAGAAGTGCTAACAATACACTCCACATGA TTGGTAAATTTTTTAAAAAGTCAATACATTTGCTTCAATTTTTGAAAAATGTATTCAAATTTTAAAAAAATAGACCAATT ACTAAAAGTGTTTCTAAAAAATGTGTTAAAAAGAGTGTGTTGCTAGAATTTCTGTTTTTTTATTAGAAGGATAGGTGCAA CAGTGATTGAACTTTAAACTTCTTTCCTCATACAGATTCTGAAACAATTCATGTCTAAAAGTTTATATGATACTGTCAGA ATGTCAGGGTCAGAGGAAAAGTGGATCAAATGAAATAGTCCCATTAAAATGGTAGATGAAAACTTCCAAAAACTTCAGAG GAGCCATAAAAATGTTATTTCTCTATAATTTTATGAATAACTTTATTTTCCATACAGTCCAATGAAATAAGACTTGACTG CTATCATTATTATTAGAAATCATAAACCTTCAATTAATGGTTGAGTCCACAAAAGCCATTACTTGGAGTTGGAAAGAACC ATTATCCCCACCAGTGCCACTATTTGTTAATGACACGTCTACTAAGACAATTACTATGAGAACCTCTTCACTGCATATGT TGTTTTTAAATTTGAATTTAGCTTGACCTTTCTGTAAAAACCATACAGCATGTAAAGAAAAATAGAGACCCGAGATGGGA TGAAACATTTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATATGTTGAAGTGCAAAGTGCCTCTTCAAAGT TGGGCCTATTGCATCCTAAGGTAATGATAATCTTACACCACTTTCATGAGACTAGATGGAATGGATTTTCTACAATATAT GAAACTAGAGATCCATGGTTTTCATCTTATCTTGATCCTGAATCAAATTTTTCCACTTCAGTTTTTATACATTTTCCTTC ACTTCAATTGAGGATGATAATTTCTGTTTTTTGACCTTGTATCTTCTTCTAATCAGGAACCTCTGGGCTATGTGGATATA AATTTATCTGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGGAAGGATTCAAAT TGAGCTTCAGTGGAGAACTCCCTGATGATGGCTAATACCAGTTCAAAATTCCCAGCATACATAGTTTTTGTAAAGCGCCG ATTCTGATGAGATTTCAATGCAAGCTCTCAAATTTGGCTCTCTATGTCGGATCAAATAAAATATTGGAGCTGAAGATTTG TTGGATAAACAACATCAATAGCTGTGTCGAGTGATGTTCCCATAGATTGTTGTCTTTGCTATGTTCAAGTTCTGTTCTCA GTTGGTGTGAGTTATTTATTAGCATTAAGGCTATGCTTGAATTAATGGAATAAAATGGAATGGAATAGAATGAAACACAA TGGAATGGAGTGAAACGGAATTGATTAAATAGTTCATCCTCCTGCTTGCATACATCATGATGGAATGCGACAGTTAGCTT AAATAGATTTTAGGCTCAGGGTTGTCGTGTGAGTCGATAGAGATAGTCAAGCGATTACTTGAGGAATGGACTATGTTCCT CAATGCTGATTCCTAAGGCGCTTCAAAAAACTCTTAGGGCCGTTAGGTGCGACATATAGTATAAGGCCTGATAGTATAAG ACCTGATAGTATTAGGTCTGATAGTATAAGCCCTGATAACTTTCTTGTACTATCCAGCATTTGACCATACTCTGTATAAT TTACCATATCGTTTAAATTAATGCAATT
CDS sequence (LotjaGi5g1v0004700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATTTTGAGTACCATAGCTAGTTTTTTGGGATTTGGAATGGGAACTTCACTTGGACTGGTGATTGGCTACTATTT TTTCATATACTTCCAACCAACACATGTCAAGGATCAAACAGTTCAACCTTTGGCCGAGCAAGATTCTAAAACTCTGCAAC AGTTGATTCCTGAGATACCCTCTTGGATTAAAAATCCAGACTATGATCGCCTTGATTGGCTTAATAAATTTATTGAGCAT ATGTGGCCTTATCTAAACAAGGCAATTTGCAAGACTGCAAGGGAGATAGCAAAGCCCATCATAGCTGAACAAATTCCAAA GTACAAAATTGATTCAGTTGAATTTGAAGAACTCAACTTGGGTTCTCTTCCACCAACTTTTCAAGGAATGAAAGTCTATA GTACTGATGAAAAGGAGTTGATTATGGAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCA TTTGGGCTGAAAGCCACAGTTCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTAGTTCC CAGTTTTCCTTGCTTTGCCAATATTTATGTGTCTCTCATGGAAAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAG CTGATGCAATGTCTATTCCTGGTGTATACAGGATTGTCCAGGAACTTATAAAAGACCAGGTTGCAAAAATGTATTTGTGG CCCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAGGTTCT CAGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTTAAACTAACAGATGATAAAC TTCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAACTTGGTCGTTAAAGAT CCAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGATTGGCAAGAATGAGAGGATGGGTATGAATGTCAT ACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTCTTAATTTACTCAAGACAATGGACCCTAAGGATCCTG AGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATACAAACCTTTTAAGGGAGATGAGTTACCTCAAAATGCT CAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTACCATCCATGAAGC TGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGACTGATATTTAAAGGAGAGGAGAGAAAAACCAAGCATG TAAAGAAAAATAGAGACCCGAGATGGGATGAAACATTTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATAT GTTGAAGTGCAAAGTGCCTCTTCAAAGTTGGGCCTATTGCATCCTAAGGAACCTCTGGGCTATGTGGATATAAATTTATC TGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGGAAGGATTCAAATTGAGCTTC AGTGGAGAACTCCCTGA
Protein sequence (LotjaGi5g1v0004700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGILSTIASFLGFGMGTSLGLVIGYYFFIYFQPTHVKDQTVQPLAEQDSKTLQQLIPEIPSWIKNPDYDRLDWLNKFIEH MWPYLNKAICKTAREIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMEPLMKLAGNPNIIVAIKA FGLKATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGVYRIVQELIKDQVAKMYLW PKALAVPIMDPTKAMKVPVGILHVKVLRAVKLRKKDLMGASDPYVKFKLTDDKLPSKKTTVKYKNLNPEWNEEFNLVVKD PESQVLELSIYDWEQIGKNERMGMNVIPLKELTPDEPKVVTLNLLKTMDPKDPENEKSRGQLIVEALYKPFKGDELPQNA QDSNGIEKAPEGTPASGGLLVITIHEAEDVEGKHHTNPYARLIFKGEERKTKHVKKNRDPRWDETFQFMLEEPPTNERLY VEVQSASSKLGLLHPKEPLGYVDINLSDVVNNKRTNEKYHLIDSKNGRIQIELQWRTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 537 | 537 | 0.0 | – | |
| PANTHER | 1 | 537 | 537 | 0.0 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| Phobius | 29 | 538 | 510 | - | – | |
| ProSiteProfiles | 67 | 249 | 183 | 27.751 | ||
| Pfam | 67 | 248 | 182 | 3.3E-20 | ||
| SUPERFAMILY | 256 | 391 | 136 | 1.09E-30 | – | |
| Gene3D | 257 | 410 | 154 | 2.6E-33 | ||
| Pfam | 260 | 361 | 102 | 5.4E-23 | ||
| SMART | 261 | 361 | 101 | 3.4E-20 | ||
| CDD | 262 | 364 | 103 | 9.10696E-26 | – | |
| ProSiteProfiles | 262 | 346 | 85 | 16.495 | ||
| PRINTS | 277 | 289 | 13 | 7.0E-7 | ||
| PRINTS | 304 | 317 | 14 | 7.0E-7 | ||
| PRINTS | 326 | 334 | 9 | 7.0E-7 | ||
| MobiDBLite | 394 | 414 | 21 | - | – | |
| SUPERFAMILY | 418 | 537 | 120 | 9.08E-22 | – | |
| SMART | 419 | 518 | 100 | 1.8E-14 | ||
| Pfam | 419 | 521 | 103 | 1.1E-12 | ||
| Gene3D | 419 | 538 | 120 | 7.8E-25 | ||
| ProSiteProfiles | 420 | 503 | 84 | 10.619 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0004700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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