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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039010
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.093s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0381800.1
n.a. Synaptotagmin-5; TAIR: AT5G11100.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|A0A0R0JHJ4|A0A0R0JHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0381800 LjG1.1_chr1 86470509 86477140 -
2 domain predictions
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LotjaGi1g1v0381800.3
n.a. Synaptotagmin-5; TAIR: AT5G11100.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|A0A0R0JHJ4|A0A0R0JHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0381800 LjG1.1_chr1 86471117 86476828 -
2 domain predictions
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LotjaGi1g1v0465600.1
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1L6S3|I1L6S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0465600 LjG1.1_chr1 97358757 97368268 +
2 domain predictions
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LotjaGi1g1v0465600.2
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1L6S3|I1L6S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0465600 LjG1.1_chr1 97358758 97370782 +
2 domain predictions
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LotjaGi1g1v0465600.3
n.a. Extended synaptotagmin-2; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|G7L1E7|G7L1E7_MEDTR C2 calcium/lipid-binding and GRAM domain protein; Found in the gene: LotjaGi1g1v0465600 LjG1.1_chr1 97359233 97364634 +
2 domain predictions
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LotjaGi1g1v0465600.4
n.a. Synaptotagmin-5; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|A0A0B2P651|A0A0B2P651_GLYSO Extended synaptotagmin-2; Found in the gene: LotjaGi1g1v0465600 LjG1.1_chr1 97359233 97367850 +
2 domain predictions
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LotjaGi1g1v0465600.5
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1L6S3|I1L6S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0465600 LjG1.1_chr1 97359233 97367850 +
2 domain predictions
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LotjaGi1g1v0559400.1
n.a. Synaptotagmin-1; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A151TMN0|A0A151TMN0_CAJCA Extended synaptotagmin-2-B; Found in the gene: LotjaGi1g1v0559400 LjG1.1_chr1 109195517 109200407 +
2 domain predictions
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LotjaGi1g1v0559400.2
n.a. Synaptotagmin, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A1J7IIF6|A0A1J7IIF6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0559400 LjG1.1_chr1 109196932 109200196 +
2 domain predictions
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LotjaGi3g1v0430200.1
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|K7KCB9|K7KCB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 LjG1.1_chr3 84146432 84153442 -
2 domain predictions
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LotjaGi3g1v0430200.2
n.a. Synaptotagmin-5; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|K7KCB9|K7KCB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 LjG1.1_chr3 84146733 84152180 -
2 domain predictions
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LotjaGi3g1v0430200.3
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|K7KCB9|K7KCB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 LjG1.1_chr3 84146733 84152180 -
2 domain predictions
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LotjaGi3g1v0430200.4
n.a. Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1JKI9|I1JKI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 LjG1.1_chr3 84146736 84152180 -
2 domain predictions
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LotjaGi3g1v0521200.1
n.a. Synaptotagmin-1; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|K7LST9|K7LST9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 LjG1.1_chr3 93774073 93780486 +
2 domain predictions
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LotjaGi3g1v0521200.2
n.a. Calcium lipid binding protein, putative; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|I1LJ17|I1LJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 LjG1.1_chr3 93774469 93778587 +
2 domain predictions
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LotjaGi3g1v0521200.3
n.a. Calcium-dependent lipid-binding (CaLB domain) family protein; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|I1LJ17|I1LJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 LjG1.1_chr3 93774469 93779926 +
2 domain predictions
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LotjaGi3g1v0521200.4
n.a. Synaptotagmin-1; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|K7LST9|K7LST9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 LjG1.1_chr3 93774903 93779926 +
2 domain predictions
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LotjaGi3g1v0521200.5
n.a. Synaptotagmin, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|I1LPS0|I1LPS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 LjG1.1_chr3 93775905 93779926 +
2 domain predictions
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LotjaGi4g1v0277600.1
n.a. Synaptotagmin-5; TAIR: AT1G05500.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|A0A0B2Q5D1|A0A0B2Q5D1_GLYSO Extended synaptotagmin-3; Found in the gene: LotjaGi4g1v0277600 LjG1.1_chr4 64771093 64780065 +
2 domain predictions
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LotjaGi5g1v0004700.1
n.a. Synaptotagmin-1; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 LjG1.1_chr5 1112815 1119482 +
2 domain predictions
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LotjaGi5g1v0004700.2
n.a. Synaptotagmin-1; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 LjG1.1_chr5 1113383 1119484 +
2 domain predictions
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LotjaGi5g1v0004700.3
n.a. Synaptotagmin-1; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 LjG1.1_chr5 1114563 1118839 +
2 domain predictions
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LotjaGi5g1v0273300.1
n.a. Calcium lipid binding protein, putative; TAIR: AT5G04220.3 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q7XA06|SYT3_ARATH Synaptotagmin-3; TrEMBL-Plants: tr|A0A151SED0|A0A151SED0_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0273300 LjG1.1_chr5 58674117 58679326 +
2 domain predictions
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LotjaGi5g1v0273300.2
n.a. Synaptotagmin-2; TAIR: AT5G04220.2 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q7XA06|SYT3_ARATH Synaptotagmin-3; TrEMBL-Plants: tr|I1LD00|I1LD00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0273300 LjG1.1_chr5 58674117 58679326 +
2 domain predictions
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LotjaGi5g1v0273300.3
n.a. Calcium-dependent lipid-binding (CaLB domain) family protein; TAIR: AT5G04220.2 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q7XA06|SYT3_ARATH Synaptotagmin-3; TrEMBL-Plants: tr|I1LD00|I1LD00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0273300 LjG1.1_chr5 58674419 58678704 +
2 domain predictions
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