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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0171300 |
Transcript ID | LotjaGi5g1v0171300.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A061EH95|A0A061EH95_THECC Uncharacterized protein; Found in the gene: LotjaGi5g1v0171300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43994339..43999989) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTCTTTAATAAGGTCCGTTTTCGTGTTGTGATATGTTAGCATTAAGGATTATGTTAAGAGTTAGGGTTAGATGT AGAGTCTATGGGCCAGGCCCATATGTACTTTGTACTACATGTTGTACTACTCTTAACCTAGTATTATATATATGAGGGAG GCTGCACCTTGCAGTGTATCCCATTACAATATCTCTTTCTCTCTCTCTTAGTCTTTTCTCTTTACATGGTATCAGAGCCT AGGTTCTCAACCTTCCTAGGTCAGCCGTCACAGCCGTCAACCTGAAGAAAAAAAAAAAAAATTCCCCCCCTTCCAGCCAC TTCAGAAAGGGCCGACCAAGGTTGCTGGGGGTAGGAAAAATTTTTTGGCGGCCGGATCTTGAAGAAATCGGCAGAATGCC GAAATCGCGGTTTATGTGAGTAATCGCGAAGGTGCTGTTTCGGAGCCAGATAGCGTACGTTTCAGGTACAGAGCAGGGCG TCTTTGCTGTCTGAGGAACGCCCAGTGATTTTCACAGCCGTCGGTGGTGATTTGGTGACGTTTCGACGTGCGACGGTGTG TTTCGGTGTGCTCTACAGGTGGAAACGTGCATTTTCTGTTAGTAACCAGCGTTCATATTGTTCGCTGAGTATTGAGTTTC TTTTATTTCTTAAGTGATTCCTCTCTGAGATATGGCTGAAGACAACTCTAAGACAAATGGTGAAGGGAAGACCCCAGTCA CCGAGTTCATGACTACTTCGTCCAAACTCACCGACATCAAGCTTGATGGGGATGGTGAGAACTATGTGGAGTGGAAGTAT TTGGTGGAGGTCAGCCTTGGAGGAATGGGAAAGGATGAGCATTTGACGGGGTCTTGTCCTACAAACGCAACGGCAGCGGC GAAATGGAAGATGGATGATAAACGCATTCTGGCGTTATTGGTGAATTCTGTTGATAAGCGGACACAATCTGTGATTACTC ATTGTCAAACAGTGAAGGAGTTATGGGAGTTTCTCCAATTTATTTTTGGGAAAGCTGATAATTTGAATCGCATCTATGCT CTGTTGCAGCAGATATTTCGTCCGAAACAGGACAAGCGTAAGTTGATGGATTATTTTCTGGAATTCAAGAAATATGCTGA GGAACTGACTTCTCTCCTATCTTGCAAGACAAAAGAGGATATGCTAGCCCAACAGAAGAAATTGATAGCATTGAGTTGGT TATCTGGCCTTGATCAGGAGTTTGAGGTGGTCCGGTCTCAGATTTTGTCGAGCAAGCAGGTGGATACTCTCACTGTTGTC TTCTCTCGAGTCATGCAGTCCTCTTTTGAGAAGCCCAAACCTGCTTCAGATGTTGATACTTCAGATCGCTCTGCTTTAGC GGCCCATTCAGGCTTTCGTGGCGGACGTGGTGGTGGCCGAGGAGGTCGTGGTGGTGCTAGAGGTCGTGGTGGACGTTCCG GACAGATCCAATGTTATAGTTGTGGAGAACTGGGTCATTACAAGAATCAATGTCCCAATTCTCAACAGCACCAACAACAT TTTCAACAGTCAGCTCCTAATCGCTTTGCCAACAACGTTTCCCAGTCAGATGTTATCCAAACACAACCAGAAAAGCGTAC AGTGGTTATGAGTGATGATGAGTTTGCCAGATATACACAGTTTCAGATCTCACAGCAGTTAGCCTCACCTTCCTCCTCCA CAGCTACCTTTGTCCAAACAGGTAATCCTACTGTGTGTCTATCCTCTACCTCACGGCGTTGGATCATTGATTCCGGCGCT ACTGATCATATGACAGGGGATTCAGGTATTTTTTCGTCATTTAGTTCCTCTAGTATTCATTCGTCTGTAACCCTTGCTGA TGGGTCCATTGTTCGTGTTAAGGGGAGTGGGTGTACCACCCCAGTTTCTACCTTACCTATGTCCTCTGTGCTATATTTAC CTCAGTTTCCTTGTAATCTTCTCTCAATTAGCAAAATAACCCGTTCATTAAAGTGTTCAGTAACCTTCTTTCCGGATTCT TGTGTGTTTCAGGATCTGTCGACACAGAGGATTATTGGTAGAGGAAGAGAATCTGATGGACTGTATCTACTAGACGAAGG AGTCTCGAAGGCATCCACAGCTTATCGTACCAGTAGCGTGTCTCCTTTTCAGCTTCATGGTCGTCTCGGTCACCCATCTC TAGGAGTTCTTAGGAAGTTGTGTCCTCAATTGGAGTCCTTATCAAATTTTTCTTGTGAGTCTTGTCAGTTTGCTAAACAT CATCGTAGTGTTTATTTACCTCGTTTGAATAAAAGAGCTATGTCTTTATTTCATATTGTCCACTCTGATGTATGGGGGCC ATGCCCTGTAACTTCTAAATTAGGTTACAAGTATTTTGTCACATTTGTGGATGATTATTCTCGTGCAACATGGTTATATT TAATGAAATCCAGATCTGAGTTATTCACTATATTTTGCAACTTTTGTGCTGAAATTCGTACTCAATTTAACTGTCCAATA CGTATTCTTCGTAGTGATAATGCCAAAGAGTACTTCTCTTCACCATTCCGTACTTTTATGGATAAACATGGCATGATTCA TCAGTCTTCTTGCATTGTTACACCACAACAAAATGGGGTGGCTGAGCGTAAAAACCGGCATCTTATGGAAGTTGCTCGTG CTTTGATGTTTCAGATGAAAGTTCCGAAATGTTTTTGGGCTGATGCAGTTCTTACTGCTGCATATTTAATTAATCGCATG CCATCCACTGTGTTAAATGGTGTTATTCCTTATTCTGTCTTGTTTCCGTCATGTTCTTTGTTTCCTTTGCCTCCAAAAGT ATTTGGTTGCACCTGTTTTGTTCTTGATGTCAGGCCTCAAGTGACTAAGTTGGATCCGAAGTCATTAAAGTGTGTGTTCC TGGGTTACTCTCGTACCCAGAAAGGGTACCGGTGTTTCTCTCCAGCTCTTGGTCGCTACCTTGTCTCTGCTGATGTTACA TTCTTTGAGGACTGCTCCTTCTCGGGGTGGTTGCCCTCCTCTTTCCCGGTATGTGAGTCAGAAGACACCTTCTTAACTTA TATCACTACTTCCCCTGCTCCACAGACTACTACTGGTACAGGTTTCCAATTTTATGAGAAGACATATAGTCGCAGGCCGA AGAGTAGTGCTCCTCCACCGGATACTCAATCTCTACCTTCAATTCCTCTGGTGTCTTCAGACCCTCATGATAATTTGGAC CTCCCTATAGCTTTACGTAAAGGTAAACGCACTTGCTCTTACCCCATCTCTTCTTATGTCACTTCCAATAAATTGTCACC TGCCTCTAAGTCTTTTGTTGCTGCCTTAGATTCTGTGTCTGTGCCTAAGTCTCTTTCAGATGCCTTATCACATGCTGGTT GGAGGCAGGCTATGGAGGAGGAAATGCTGGCCCTTGAGCATAATGCGACTTGGGATTTGGTCCCTTTACCCGCAGGGAAA CAAGTTGTTGGGTGTAAGTGGGTTTACACTACTAAAGTAAACCCTGATGGTTCTCTGGCTCGCCTGAAAGCTCGGTTGGT TGCTAAGGGATATGCTCAAACATATGGGGTCGACTACACTGATACTTTTTCCCCTGTTGCTAAATTGTCCTCTGTTCGCA TTCTCATCTCTCTTGCTGCTACTAATCATTGGCCTTTGTTCCAGTTAGATGTGAAGAATGCATTTTTACATGGTGATTTA CAGGATGAGGTATACATGGAGCAACCACCCGGGTTTGTTGCTCAGGGGGAGTGTGGGAAAGTGTGTCGACTCAAGAAATC ATTGTATGGCCTAAAACAATCACCTAGGTCCTGGTTTGGACGATTCAGTGATGTTGTTATGGAGTTTGGTTTACGAAGAA GCGAGAGTGACCACACTGTGTTTTTCAAGCAAACTAATAAAGGCTGCATTTTATTGGTTGTTTATGTTGATGATATTGTG ATTACAGGTAGTGATAGTGAAGGAATTGGCAACTTGAAGACTTTCCTTCAGATGAAGTTTCAGACCAAAGATCTTGGAAT TCTGAAATACTTTTTGGGCATTGAAGTTATGTACTCGAAGAATGGGATTATGATATCTCAGAGGAAGTATGTTTTGGATT TGCTAGCTGAGACTGGTCTTATGGGATCTAAACCATGTGAGACCCCTATGGAACCAGGAATGAAACTTACAGCAGAAGGA GTTCCTTTCAATGACCCACAGCAATATAGAAGATTGGTGGGTAAGTTGAATTACTTGACAGTTACCAGACCAGATATTGC CTTCCCAGTGAGCGTTGTAAGTCAGTTTATGTCCTCCCCGACAGACGCACATTGGGAAGCATTGATTCGCATTGTCAAGT ATCTGAAGAAAGCTCCAGGAAGAGGTATCGTGTACAGGGATCATGGACATATGCGAGTGGAGGCATTTTCAGATGCTGAC TGGGCAGGATCTCCTATGGATAGAAAATCCACCACTGGCTATTGTGTATTTTTGGGAGGTAATTTAATTTCTTGGAAAAG CAAGAAGCAAAATGTGGTGGCACGATCTAGTGCAGAAGCTGAATATCGTGCTATGGCTCAAACTACTTGTGAACTTATGT GGGTAGGACAAATCTTGAGTGAGATGGGAATTGAGAGGATATCTCCAATGAAACTATGGTGTGATAATCAGGCTGCCCTA CATATCTCATCAAATCCAGTTTTTCATGAAAGAACTAAACATATTGAGGTGGATTGCCATTTTATTCGTGAGAAACTTCA ACAGAACCTTATATCTACTTCTTATGTTAGAACAGGCGATCAACTTGCAGATGTGTTTACAAAGGCTTTGAATGGGGTGT GTAATGATTTTATTTGTAACAAGCTGGGCATGATTAATATCTATGCTCCAGCTTGAGGGGGAGTGTTAGCATTAAGGATT ATGTTAAGAGTTAGGGTTAGATGTAGAGTCTATGGGCCAGGCCCATATGTACTTTGTACTACATGTTGTACTACTCTTAA CCTAGTATTATATATATGAGGGAGGTTGCACCTTGCAGTGTATCCCATTACAATATCTCTTTCTCTCTCTCTCTTAGTCT TTTCTCTTTACATGGTATCAGAGCCTAGGTTCTCAACCTTCCTAGGTCAGCCGTCAACCTGAAAAAAAAAAAAAAAAAAT CCGAAAAAAAAAAAAATGTCCCCCCCTTCCAGCCACTTCAGAAAGGGCCGACCAAGGTTGCTGGGGGTAGAAGATTAGCT GTCTTGGAAGTGATTTGTATGTTTTGAACGGAATGAAGAGGACCAACCTGCTTTCCAGTAAATTCTTGAAATTTTAGCCA TATTTGTTCTATCAGGGGCTCTACTCTATCCCTCGGTCCTCTTTCCCAGTCCCTCAACACAATTGTTCAAAGTTCAAACT AATTTGTTAGAAATGCAGATGGAGAGAGAAAGAGGAGAAGCAAGTAGAATTGAGTCTGAAAATTGTATTCTGGTTTTCTA ATCTGATTTCTGCATACTATCATATTAGAGTATGTTTGTGTATGGGAGTATTGTGTACTCAAGTGTATGGGATCCTGCCC TTGGAGGCAGTTAGTTTCTGTTATGACAGCTGTACAAGTTAGTTTGAGTAGTTAGTATCTCCTATTGTAAGCAAACTAAT GTAACTCTTTATATAGAAGAGCTACTCTTGTAATCACAATCAATAATTCAG
CDS sequence (LotjaGi5g1v0171300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGACAACTCTAAGACAAATGGTGAAGGGAAGACCCCAGTCACCGAGTTCATGACTACTTCGTCCAAACTCAC CGACATCAAGCTTGATGGGGATGGTGAGAACTATGTGGAGTGGAAGTATTTGGTGGAGGTCAGCCTTGGAGGAATGGGAA AGGATGAGCATTTGACGGGGTCTTGTCCTACAAACGCAACGGCAGCGGCGAAATGGAAGATGGATGATAAACGCATTCTG GCGTTATTGGTGAATTCTGTTGATAAGCGGACACAATCTGTGATTACTCATTGTCAAACAGTGAAGGAGTTATGGGAGTT TCTCCAATTTATTTTTGGGAAAGCTGATAATTTGAATCGCATCTATGCTCTGTTGCAGCAGATATTTCGTCCGAAACAGG ACAAGCGTAAGTTGATGGATTATTTTCTGGAATTCAAGAAATATGCTGAGGAACTGACTTCTCTCCTATCTTGCAAGACA AAAGAGGATATGCTAGCCCAACAGAAGAAATTGATAGCATTGAGTTGGTTATCTGGCCTTGATCAGGAGTTTGAGGTGGT CCGGTCTCAGATTTTGTCGAGCAAGCAGGTGGATACTCTCACTGTTGTCTTCTCTCGAGTCATGCAGTCCTCTTTTGAGA AGCCCAAACCTGCTTCAGATGTTGATACTTCAGATCGCTCTGCTTTAGCGGCCCATTCAGGCTTTCGTGGCGGACGTGGT GGTGGCCGAGGAGGTCGTGGTGGTGCTAGAGGTCGTGGTGGACGTTCCGGACAGATCCAATGTTATAGTTGTGGAGAACT GGGTCATTACAAGAATCAATGTCCCAATTCTCAACAGCACCAACAACATTTTCAACAGTCAGCTCCTAATCGCTTTGCCA ACAACGTTTCCCAGTCAGATGTTATCCAAACACAACCAGAAAAGCGTACAGTGGTTATGAGTGATGATGAGTTTGCCAGA TATACACAGTTTCAGATCTCACAGCAGTTAGCCTCACCTTCCTCCTCCACAGCTACCTTTGTCCAAACAGGTAATCCTAC TGTGTGTCTATCCTCTACCTCACGGCGTTGGATCATTGATTCCGGCGCTACTGATCATATGACAGGGGATTCAGGATCTG TCGACACAGAGGATTATTGGTAG
Protein sequence (LotjaGi5g1v0171300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEDNSKTNGEGKTPVTEFMTTSSKLTDIKLDGDGENYVEWKYLVEVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRIL ALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQQIFRPKQDKRKLMDYFLEFKKYAEELTSLLSCKT KEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTVVFSRVMQSSFEKPKPASDVDTSDRSALAAHSGFRGGRG GGRGGRGGARGRGGRSGQIQCYSCGELGHYKNQCPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFAR YTQFQISQQLASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATDHMTGDSGSVDTEDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 27 | 307 | 281 | 1.3E-45 | – | |
PANTHER | 27 | 307 | 281 | 1.3E-45 | – | |
Pfam | 72 | 210 | 139 | 2.3E-10 | – | |
MobiDBLite | 214 | 256 | 43 | - | – | |
Gene3D | 238 | 288 | 51 | 9.8E-7 | – | |
SUPERFAMILY | 242 | 284 | 43 | 1.74E-8 | ||
Pfam | 260 | 276 | 17 | 4.7E-6 | ||
SMART | 260 | 276 | 17 | 6.5E-4 | ||
ProSiteProfiles | 261 | 276 | 16 | 10.444 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0171300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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