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LotjaGi5g1v0171300.6

Overview

Field Value
Gene ID LotjaGi5g1v0171300
Transcript ID LotjaGi5g1v0171300.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A061EH95|A0A061EH95_THECC Uncharacterized protein; Found in the gene: LotjaGi5g1v0171300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:43994339..43999989) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTTTTCTTTAATAAGGTCCGTTTTCGTGTTGTGATATGTTAGCATTAAGGATTATGTTAAGAGTTAGGGTTAGATGT AGAGTCTATGGGCCAGGCCCATATGTACTTTGTACTACATGTTGTACTACTCTTAACCTAGTATTATATATATGAGGGAG GCTGCACCTTGCAGTGTATCCCATTACAATATCTCTTTCTCTCTCTCTTAGTCTTTTCTCTTTACATGGTATCAGAGCCT AGGTTCTCAACCTTCCTAGGTCAGCCGTCACAGCCGTCAACCTGAAGAAAAAAAAAAAAAATTCCCCCCCTTCCAGCCAC TTCAGAAAGGGCCGACCAAGGTTGCTGGGGGTAGGAAAAATTTTTTGGCGGCCGGATCTTGAAGAAATCGGCAGAATGCC GAAATCGCGGTTTATGTGAGTAATCGCGAAGGTGCTGTTTCGGAGCCAGATAGCGTACGTTTCAGGTACAGAGCAGGGCG TCTTTGCTGTCTGAGGAACGCCCAGTGATTTTCACAGCCGTCGGTGGTGATTTGGTGACGTTTCGACGTGCGACGGTGTG TTTCGGTGTGCTCTACAGGTGGAAACGTGCATTTTCTGTTAGTAACCAGCGTTCATATTGTTCGCTGAGTATTGAGTTTC TTTTATTTCTTAAGTGATTCCTCTCTGAGATATGGCTGAAGACAACTCTAAGACAAATGGTGAAGGGAAGACCCCAGTCA CCGAGTTCATGACTACTTCGTCCAAACTCACCGACATCAAGCTTGATGGGGATGGTGAGAACTATGTGGAGTGGAAGTAT TTGGTGGAGGTCAGCCTTGGAGGAATGGGAAAGGATGAGCATTTGACGGGGTCTTGTCCTACAAACGCAACGGCAGCGGC GAAATGGAAGATGGATGATAAACGCATTCTGGCGTTATTGGTGAATTCTGTTGATAAGCGGACACAATCTGTGATTACTC ATTGTCAAACAGTGAAGGAGTTATGGGAGTTTCTCCAATTTATTTTTGGGAAAGCTGATAATTTGAATCGCATCTATGCT CTGTTGCAGCAGATATTTCGTCCGAAACAGGACAAGCGTAAGTTGATGGATTATTTTCTGGAATTCAAGAAATATGCTGA GGAACTGACTTCTCTCCTATCTTGCAAGACAAAAGAGGATATGCTAGCCCAACAGAAGAAATTGATAGCATTGAGTTGGT TATCTGGCCTTGATCAGGAGTTTGAGGTGGTCCGGTCTCAGATTTTGTCGAGCAAGCAGGTGGATACTCTCACTGTTGTC TTCTCTCGAGTCATGCAGTCCTCTTTTGAGAAGCCCAAACCTGCTTCAGATGTTGATACTTCAGATCGCTCTGCTTTAGC GGCCCATTCAGGCTTTCGTGGCGGACGTGGTGGTGGCCGAGGAGGTCGTGGTGGTGCTAGAGGTCGTGGTGGACGTTCCG GACAGATCCAATGTTATAGTTGTGGAGAACTGGGTCATTACAAGAATCAATGTCCCAATTCTCAACAGCACCAACAACAT TTTCAACAGTCAGCTCCTAATCGCTTTGCCAACAACGTTTCCCAGTCAGATGTTATCCAAACACAACCAGAAAAGCGTAC AGTGGTTATGAGTGATGATGAGTTTGCCAGATATACACAGTTTCAGATCTCACAGCAGTTAGCCTCACCTTCCTCCTCCA CAGCTACCTTTGTCCAAACAGGTAATCCTACTGTGTGTCTATCCTCTACCTCACGGCGTTGGATCATTGATTCCGGCGCT ACTGATCATATGACAGGGGATTCAGGTATTTTTTCGTCATTTAGTTCCTCTAGTATTCATTCGTCTGTAACCCTTGCTGA TGGGTCCATTGTTCGTGTTAAGGGGAGTGGGTGTACCACCCCAGTTTCTACCTTACCTATGTCCTCTGTGCTATATTTAC CTCAGTTTCCTTGTAATCTTCTCTCAATTAGCAAAATAACCCGTTCATTAAAGTGTTCAGTAACCTTCTTTCCGGATTCT TGTGTGTTTCAGGATCTGTCGACACAGAGGATTATTGGTAGAGGAAGAGAATCTGATGGACTGTATCTACTAGACGAAGG AGTCTCGAAGGCATCCACAGCTTATCGTACCAGTAGCGTGTCTCCTTTTCAGCTTCATGGTCGTCTCGGTCACCCATCTC TAGGAGTTCTTAGGAAGTTGTGTCCTCAATTGGAGTCCTTATCAAATTTTTCTTGTGAGTCTTGTCAGTTTGCTAAACAT CATCGTAGTGTTTATTTACCTCGTTTGAATAAAAGAGCTATGTCTTTATTTCATATTGTCCACTCTGATGTATGGGGGCC ATGCCCTGTAACTTCTAAATTAGGTTACAAGTATTTTGTCACATTTGTGGATGATTATTCTCGTGCAACATGGTTATATT TAATGAAATCCAGATCTGAGTTATTCACTATATTTTGCAACTTTTGTGCTGAAATTCGTACTCAATTTAACTGTCCAATA CGTATTCTTCGTAGTGATAATGCCAAAGAGTACTTCTCTTCACCATTCCGTACTTTTATGGATAAACATGGCATGATTCA TCAGTCTTCTTGCATTGTTACACCACAACAAAATGGGGTGGCTGAGCGTAAAAACCGGCATCTTATGGAAGTTGCTCGTG CTTTGATGTTTCAGATGAAAGTTCCGAAATGTTTTTGGGCTGATGCAGTTCTTACTGCTGCATATTTAATTAATCGCATG CCATCCACTGTGTTAAATGGTGTTATTCCTTATTCTGTCTTGTTTCCGTCATGTTCTTTGTTTCCTTTGCCTCCAAAAGT ATTTGGTTGCACCTGTTTTGTTCTTGATGTCAGGCCTCAAGTGACTAAGTTGGATCCGAAGTCATTAAAGTGTGTGTTCC TGGGTTACTCTCGTACCCAGAAAGGGTACCGGTGTTTCTCTCCAGCTCTTGGTCGCTACCTTGTCTCTGCTGATGTTACA TTCTTTGAGGACTGCTCCTTCTCGGGGTGGTTGCCCTCCTCTTTCCCGGTATGTGAGTCAGAAGACACCTTCTTAACTTA TATCACTACTTCCCCTGCTCCACAGACTACTACTGGTACAGGTTTCCAATTTTATGAGAAGACATATAGTCGCAGGCCGA AGAGTAGTGCTCCTCCACCGGATACTCAATCTCTACCTTCAATTCCTCTGGTGTCTTCAGACCCTCATGATAATTTGGAC CTCCCTATAGCTTTACGTAAAGGTAAACGCACTTGCTCTTACCCCATCTCTTCTTATGTCACTTCCAATAAATTGTCACC TGCCTCTAAGTCTTTTGTTGCTGCCTTAGATTCTGTGTCTGTGCCTAAGTCTCTTTCAGATGCCTTATCACATGCTGGTT GGAGGCAGGCTATGGAGGAGGAAATGCTGGCCCTTGAGCATAATGCGACTTGGGATTTGGTCCCTTTACCCGCAGGGAAA CAAGTTGTTGGGTGTAAGTGGGTTTACACTACTAAAGTAAACCCTGATGGTTCTCTGGCTCGCCTGAAAGCTCGGTTGGT TGCTAAGGGATATGCTCAAACATATGGGGTCGACTACACTGATACTTTTTCCCCTGTTGCTAAATTGTCCTCTGTTCGCA TTCTCATCTCTCTTGCTGCTACTAATCATTGGCCTTTGTTCCAGTTAGATGTGAAGAATGCATTTTTACATGGTGATTTA CAGGATGAGGTATACATGGAGCAACCACCCGGGTTTGTTGCTCAGGGGGAGTGTGGGAAAGTGTGTCGACTCAAGAAATC ATTGTATGGCCTAAAACAATCACCTAGGTCCTGGTTTGGACGATTCAGTGATGTTGTTATGGAGTTTGGTTTACGAAGAA GCGAGAGTGACCACACTGTGTTTTTCAAGCAAACTAATAAAGGCTGCATTTTATTGGTTGTTTATGTTGATGATATTGTG ATTACAGGTAGTGATAGTGAAGGAATTGGCAACTTGAAGACTTTCCTTCAGATGAAGTTTCAGACCAAAGATCTTGGAAT TCTGAAATACTTTTTGGGCATTGAAGTTATGTACTCGAAGAATGGGATTATGATATCTCAGAGGAAGTATGTTTTGGATT TGCTAGCTGAGACTGGTCTTATGGGATCTAAACCATGTGAGACCCCTATGGAACCAGGAATGAAACTTACAGCAGAAGGA GTTCCTTTCAATGACCCACAGCAATATAGAAGATTGGTGGGTAAGTTGAATTACTTGACAGTTACCAGACCAGATATTGC CTTCCCAGTGAGCGTTGTAAGTCAGTTTATGTCCTCCCCGACAGACGCACATTGGGAAGCATTGATTCGCATTGTCAAGT ATCTGAAGAAAGCTCCAGGAAGAGGTATCGTGTACAGGGATCATGGACATATGCGAGTGGAGGCATTTTCAGATGCTGAC TGGGCAGGATCTCCTATGGATAGAAAATCCACCACTGGCTATTGTGTATTTTTGGGAGGTAATTTAATTTCTTGGAAAAG CAAGAAGCAAAATGTGGTGGCACGATCTAGTGCAGAAGCTGAATATCGTGCTATGGCTCAAACTACTTGTGAACTTATGT GGGTAGGACAAATCTTGAGTGAGATGGGAATTGAGAGGATATCTCCAATGAAACTATGGTGTGATAATCAGGCTGCCCTA CATATCTCATCAAATCCAGTTTTTCATGAAAGAACTAAACATATTGAGGTGGATTGCCATTTTATTCGTGAGAAACTTCA ACAGAACCTTATATCTACTTCTTATGTTAGAACAGGCGATCAACTTGCAGATGTGTTTACAAAGGCTTTGAATGGGGTGT GTAATGATTTTATTTGTAACAAGCTGGGCATGATTAATATCTATGCTCCAGCTTGAGGGGGAGTGTTAGCATTAAGGATT ATGTTAAGAGTTAGGGTTAGATGTAGAGTCTATGGGCCAGGCCCATATGTACTTTGTACTACATGTTGTACTACTCTTAA CCTAGTATTATATATATGAGGGAGGTTGCACCTTGCAGTGTATCCCATTACAATATCTCTTTCTCTCTCTCTCTTAGTCT TTTCTCTTTACATGGTATCAGAGCCTAGGTTCTCAACCTTCCTAGGTCAGCCGTCAACCTGAAAAAAAAAAAAAAAAAAT CCGAAAAAAAAAAAAATGTCCCCCCCTTCCAGCCACTTCAGAAAGGGCCGACCAAGGTTGCTGGGGGTAGAAGATTAGCT GTCTTGGAAGTGATTTGTATGTTTTGAACGGAATGAAGAGGACCAACCTGCTTTCCAGTAAATTCTTGAAATTTTAGCCA TATTTGTTCTATCAGGGGCTCTACTCTATCCCTCGGTCCTCTTTCCCAGTCCCTCAACACAATTGTTCAAAGTTCAAACT AATTTGTTAGAAATGCAGATGGAGAGAGAAAGAGGAGAAGCAAGTAGAATTGAGTCTGAAAATTGTATTCTGGTTTTCTA ATCTGATTTCTGCATACTATCATATTAGAGTATGTTTGTGTATGGGAGTATTGTGTACTCAAGTGTATGGGATCCTGCCC TTGGAGGCAGTTAGTTTCTGTTATGACAGCTGTACAAGTTAGTTTGAGTAGTTAGTATCTCCTATTGTAAGCAAACTAAT GTAACTCTTTATATAGAAGAGCTACTCTTGTAATCACAATCAATAATTCAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0171300.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAAGACAACTCTAAGACAAATGGTGAAGGGAAGACCCCAGTCACCGAGTTCATGACTACTTCGTCCAAACTCAC CGACATCAAGCTTGATGGGGATGGTGAGAACTATGTGGAGTGGAAGTATTTGGTGGAGGTCAGCCTTGGAGGAATGGGAA AGGATGAGCATTTGACGGGGTCTTGTCCTACAAACGCAACGGCAGCGGCGAAATGGAAGATGGATGATAAACGCATTCTG GCGTTATTGGTGAATTCTGTTGATAAGCGGACACAATCTGTGATTACTCATTGTCAAACAGTGAAGGAGTTATGGGAGTT TCTCCAATTTATTTTTGGGAAAGCTGATAATTTGAATCGCATCTATGCTCTGTTGCAGCAGATATTTCGTCCGAAACAGG ACAAGCGTAAGTTGATGGATTATTTTCTGGAATTCAAGAAATATGCTGAGGAACTGACTTCTCTCCTATCTTGCAAGACA AAAGAGGATATGCTAGCCCAACAGAAGAAATTGATAGCATTGAGTTGGTTATCTGGCCTTGATCAGGAGTTTGAGGTGGT CCGGTCTCAGATTTTGTCGAGCAAGCAGGTGGATACTCTCACTGTTGTCTTCTCTCGAGTCATGCAGTCCTCTTTTGAGA AGCCCAAACCTGCTTCAGATGTTGATACTTCAGATCGCTCTGCTTTAGCGGCCCATTCAGGCTTTCGTGGCGGACGTGGT GGTGGCCGAGGAGGTCGTGGTGGTGCTAGAGGTCGTGGTGGACGTTCCGGACAGATCCAATGTTATAGTTGTGGAGAACT GGGTCATTACAAGAATCAATGTCCCAATTCTCAACAGCACCAACAACATTTTCAACAGTCAGCTCCTAATCGCTTTGCCA ACAACGTTTCCCAGTCAGATGTTATCCAAACACAACCAGAAAAGCGTACAGTGGTTATGAGTGATGATGAGTTTGCCAGA TATACACAGTTTCAGATCTCACAGCAGTTAGCCTCACCTTCCTCCTCCACAGCTACCTTTGTCCAAACAGGTAATCCTAC TGTGTGTCTATCCTCTACCTCACGGCGTTGGATCATTGATTCCGGCGCTACTGATCATATGACAGGGGATTCAGGATCTG TCGACACAGAGGATTATTGGTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0171300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEDNSKTNGEGKTPVTEFMTTSSKLTDIKLDGDGENYVEWKYLVEVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRIL ALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQQIFRPKQDKRKLMDYFLEFKKYAEELTSLLSCKT KEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTVVFSRVMQSSFEKPKPASDVDTSDRSALAAHSGFRGGRG GGRGGRGGARGRGGRSGQIQCYSCGELGHYKNQCPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFAR YTQFQISQQLASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATDHMTGDSGSVDTEDYW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34222:SF15
27 307 281 1.3E-45 –
PANTHER
PTHR34222
27 307 281 1.3E-45 –
Pfam
PF14223
72 210 139 2.3E-10 –
MobiDBLite
mobidb-lite
214 256 43 - –
Gene3D
G3DSA:4.10.60.10
238 288 51 9.8E-7 –
SUPERFAMILY
SSF57756
242 284 43 1.74E-8
IPR036875
Pfam
PF00098
260 276 17 4.7E-6
IPR001878
SMART
SM00343
260 276 17 6.5E-4
IPR001878
ProSiteProfiles
PS50158
261 276 16 10.444
IPR001878

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0171300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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