Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0208300 |
| Transcript ID | LotjaGi5g1v0208300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G08610.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610; TrEMBL-Plants: tr|A0A0B2P6H7|A0A0B2P6H7_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi5g1v0208300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51002228..51005305) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAATATTTTAAGCATCCATCCTACAAATGGTCTGCGAGGTTGTAACAGGCAAGGGAGTACTTCTGGTGCTGGCTCT AATCATAGTTTAAGGAAAAAATCATCTACCCTGCCCCAAATTTCTTCTAATGATTGCTTTTCTACAAATAAATCTTGTTT GGCTCAGAGAAGATTGCAGTGTAGAAGTTTTCAAGGAAGTGCTGTAATTGATAGAGTTAATGAAGTTGACCATGAAGATT GGGGACTTGAAAGTTTTGAAAGGAGAGAATCTGGGGAACTGGTAGATCCTGGCAAGCCTGTGAAGCCTCCACCGTTTGTC AGAAATGATGGGTTCACCAACAACAAAATTCTTCAGAATCTCTGCACTCGGGGAAGGTTAATGGCTGCAGCAAGGTTGAT TGAGATTATGGCACGTAAAAGTCAAATACCCCATTTCCCATCTTGCACAAATTTGATTCGAGGCCTTATCAAGATCGGTC AGATAGATAAAGGTTGCAAAATCATTAACATAATGGTCATGTCTGGGGGTGTTCCTGATGTTATTACGTGCAACATGGTT ATTGGTGGCCTGTGTAAAAGAGGGTATTTAAAATCTGCTGTTGATTTGGTAGAAGATATGAGCTTGAGTGGTTGCTCCCC AGATGCGATTACTTACAATACAATAATTCGCGGCATGTTTGATAAGGGAAATTTCAATGAGGCTGTTAGTTTCTGGAAGG ACCAATTGAGAAAAGGGTGCCCTCCTTATTTGATTACCTATACAGTTCTAATTGAGCTGGTTTGCAGATATTGTGGGGCT ATTCGAGCGCTGGAAGTACTAGAAGATATGGCAATGGAAGGTTGCTATCCTGATATCATTACGTACAACTCTCTTGTAAG TTTTACTGCTAAACAAGGAGTATATGAGGAGACTTATTTGGTTATATCGAATCTTCTATCCCGTGGGATGCAACCGAATG CTGTAACATACAATACTCTTATCCACTCCCTTAGTAGCCATGGTTATTGGGATGGAGTTGATGATGTTCTGGAAATTATG AATGAGACTTCCAGTCCTCCAACGCGTGTTACTTACAATATTATGCTAAATGGTTTATGTAAGTCTGGACTTCTAGACCG TGCCATAAGCTTGTACAGCACAATGGTTTCTGAGAGCTGTTTTCCGGACATTGTCACTTACAATACTCTTCTAAGTGGGT TATGTAAAGAGGGGTTTGTAGATGAGGGCATCCAGTTACTTTACTTGTTGACAGGTACTAATTGTTCTCCTGGGTTGGTC ACCTATAATATTGCAATTGATGGGTTGGCTAGAATGGGATCCATGGAGTCAGCAAAAGAATTGTATAGTGAAATGATAGG AAAAGGAATTGTTCCTGATGAAATTACCCACAGTAGTTTGGCCTGGGGTTTTTGTGGGGTGGACCAACTTGAGGAAGCTA TGGAGCTATTAAAGGAGATGCATAAGAAAGATGAAAAGATTAAACATACTGCTTACAGATGTGTAATTTTAGGATTATGT AAACAAAGGAAGGTTGATATTGCAATTCAAGCTCTAGATTTGATGGTTAGAAGTCGATGCAAGCCAGATGAGAAGATATA TGATGCTTTAATTAAAGCTGTTGCTGATTCGGGTATGGTGAAAGAGGCTAATGATTTGCATCAAAGGTTGATCGAATGGA AGATTCTTAAAACGGAAATCATTTGAGGTTGGAGTTTGCCCTTAAAGATTTGCCAAATTCAGACCATGTACAGATTTTAC ATTCCTATCAGGTGATTCTTTTAAATCTTTCTTGATTGTGGGATTAGGATGCTGTCTTGTTTGGACGGGGTTCGTACTTC CCAAGTTCTCTCTATTTCTCTCCAATCATGGTAGAAACTAGAGAAAGATAGAGAATCTGGGGAATAGATCCCCTCTTAAT GAAAGAGGATTCAATTCCTTGTTTGTGGGAGCCTTGAATCATCTGTAGAATGTAATGACTAATGATGGCTACCTCCCAAG AGTTTTGTGCTTCTAGTTCGTGCTATTTTTATTTTGACACAGCTACTTCAATGATTATCCTAACTGAAAATATCTGTTAT GTTGATGATTATTCAAACGGAAATCATGTCATATAATGTTACATGGTTTAAGTTCGTTTTCCCTTTTTTGGCAGCTATAA TTTACGTGGTTTCTTGCATGTTGATAGAACTGGATCAGAATATTGAATAAAAGAATGTTATATTGATGAGAATGTTCCCA ACTCATTAGTGATACCGGTACCCATGGGATACACAATGGGTGAAGGAGACGTAGTGAAGTACAACAAAATATAGACAGAG ATAGGGAATAGTAGTGTCTAGCCTCCTAGGTAGTCGAGAGACTTGGACTTTTCCATTCAAACCCTTCCTAGAACTTCCCT CTGTTTCTTTCTTCTGAATATTTATATACAGTCTTGTCCCACCCCTATAACAAACTGCCTCAAACAAATTGATTCCAACA ACTAATCAGGTGGGATTACCTGTGTGTCTACAATCCTTATTCATCTTCAGTGTTATTATATTTTACTAATGTAAGCACAG TTTCCTTAAAACTAAAATTAGTGTACCTAGTGCTGTTTTGATACTAAACAAATGAATTGTCCTTGGTATGCTAAGGCTAT GAAAAACTGAGTTACTTGCAATCAATTGCTTGAATTTTGATTTCATTCTCTGACGTGATCTTATCAGAAAACTAGAAGTA ACATTGTATCTAGCATTGTTTATTAATAGCTGCTGATTTTACTGTGGTTATTTTTGAATGCCAGGAAAGCTTGTTAAGAA GTTTTGACATTGAGACTGCAAGGGGAGACAATATCATTTCAGCAGGAAATAAAATTTGAATAGTTGAAGTCAACATGAAC TTATCTTTGTCTAAGTTACTTTTAATGTAAATCTGATTTTCAAGTTTGCAGATTTTAGATAACTCCATGAGTGTAGACAA TATATTATGAACCTTTTGTTGGTTTTGGTAGTTATAAATTCATTCCTGTTAAAGTGTTATAGTATAGTACCATAATATCA ACACACTACCATCTCACCAAGATTGTCGATAGTTATTA
CDS sequence (LotjaGi5g1v0208300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAGCAAGGTTGATTGAGATTATGGCACGTAAAAGTCAAATACCCCATTTCCCATCTTGCACAAATTTGATTCG AGGCCTTATCAAGATCGGTCAGATAGATAAAGGTTGCAAAATCATTAACATAATGGTCATGTCTGGGGGTGTTCCTGATG TTATTACGTGCAACATGGTTATTGGTGGCCTGTGTAAAAGAGGGTATTTAAAATCTGCTGTTGATTTGGTAGAAGATATG AGCTTGAGTGGTTGCTCCCCAGATGCGATTACTTACAATACAATAATTCGCGGCATGTTTGATAAGGGAAATTTCAATGA GGCTGTTAGTTTCTGGAAGGACCAATTGAGAAAAGGGTGCCCTCCTTATTTGATTACCTATACAGTTCTAATTGAGCTGG TTTGCAGATATTGTGGGGCTATTCGAGCGCTGGAAGTACTAGAAGATATGGCAATGGAAGGTTGCTATCCTGATATCATT ACGTACAACTCTCTTGTAAGTTTTACTGCTAAACAAGGAGTATATGAGGAGACTTATTTGGTTATATCGAATCTTCTATC CCGTGGGATGCAACCGAATGCTGTAACATACAATACTCTTATCCACTCCCTTAGTAGCCATGGTTATTGGGATGGAGTTG ATGATGTTCTGGAAATTATGAATGAGACTTCCAGTCCTCCAACGCGTGTTACTTACAATATTATGCTAAATGGTTTATGT AAGTCTGGACTTCTAGACCGTGCCATAAGCTTGTACAGCACAATGGTTTCTGAGAGCTGTTTTCCGGACATTGTCACTTA CAATACTCTTCTAAGTGGGTTATGTAAAGAGGGGTTTGTAGATGAGGGCATCCAGTTACTTTACTTGTTGACAGGTACTA ATTGTTCTCCTGGGTTGGTCACCTATAATATTGCAATTGATGGGTTGGCTAGAATGGGATCCATGGAGTCAGCAAAAGAA TTGTATAGTGAAATGATAGGAAAAGGAATTGTTCCTGATGAAATTACCCACAGTAGTTTGGCCTGGGGTTTTTGTGGGGT GGACCAACTTGAGGAAGCTATGGAGCTATTAAAGGAGATGCATAAGAAAGATGAAAAGATTAAACATACTGCTTACAGAT GTGTAATTTTAGGATTATGTAAACAAAGGAAGGTTGATATTGCAATTCAAGCTCTAGATTTGATGGTTAGAAGTCGATGC AAGCCAGATGAGAAGATATATGATGCTTTAATTAAAGCTGTTGCTGATTCGGGTATGGTGAAAGAGGCTAATGATTTGCA TCAAAGGTTGATCGAATGGAAGATTCTTAAAACGGAAATCATTTGA
Protein sequence (LotjaGi5g1v0208300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAARLIEIMARKSQIPHFPSCTNLIRGLIKIGQIDKGCKIINIMVMSGGVPDVITCNMVIGGLCKRGYLKSAVDLVEDM SLSGCSPDAITYNTIIRGMFDKGNFNEAVSFWKDQLRKGCPPYLITYTVLIELVCRYCGAIRALEVLEDMAMEGCYPDII TYNSLVSFTAKQGVYEETYLVISNLLSRGMQPNAVTYNTLIHSLSSHGYWDGVDDVLEIMNETSSPPTRVTYNIMLNGLC KSGLLDRAISLYSTMVSESCFPDIVTYNTLLSGLCKEGFVDEGIQLLYLLTGTNCSPGLVTYNIAIDGLARMGSMESAKE LYSEMIGKGIVPDEITHSSLAWGFCGVDQLEEAMELLKEMHKKDEKIKHTAYRCVILGLCKQRKVDIAIQALDLMVRSRC KPDEKIYDALIKAVADSGMVKEANDLHQRLIEWKILKTEII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 81 | 81 | 4.2E-13 | ||
| PANTHER | 2 | 136 | 135 | 2.8E-95 | – | |
| ProSiteProfiles | 18 | 52 | 35 | 7.914 | ||
| Pfam | 21 | 49 | 29 | 0.13 | ||
| TIGRFAM | 21 | 54 | 34 | 8.0E-4 | ||
| Pfam | 52 | 99 | 48 | 4.0E-15 | ||
| ProSiteProfiles | 53 | 87 | 35 | 11.696 | ||
| TIGRFAM | 55 | 89 | 35 | 1.1E-8 | ||
| Gene3D | 82 | 151 | 70 | 2.6E-15 | ||
| ProSiteProfiles | 88 | 122 | 35 | 11.926 | ||
| TIGRFAM | 90 | 122 | 33 | 5.9E-7 | ||
| PANTHER | 117 | 297 | 181 | 2.8E-95 | – | |
| ProSiteProfiles | 123 | 157 | 35 | 8.035 | ||
| Pfam | 125 | 155 | 31 | 1.2 | ||
| Gene3D | 152 | 222 | 71 | 5.7E-14 | ||
| Pfam | 157 | 205 | 49 | 4.3E-9 | ||
| ProSiteProfiles | 158 | 192 | 35 | 9.591 | ||
| ProSiteProfiles | 193 | 227 | 35 | 10.271 | ||
| TIGRFAM | 195 | 227 | 33 | 2.0E-4 | ||
| Gene3D | 223 | 290 | 68 | 4.5E-20 | ||
| Pfam | 227 | 276 | 50 | 3.0E-17 | ||
| ProSiteProfiles | 228 | 262 | 35 | 12.386 | ||
| TIGRFAM | 230 | 264 | 35 | 3.7E-10 | ||
| ProSiteProfiles | 263 | 297 | 35 | 11.564 | ||
| TIGRFAM | 265 | 297 | 33 | 1.3E-6 | ||
| Gene3D | 292 | 439 | 148 | 2.9E-33 | ||
| PANTHER | 295 | 431 | 137 | 2.8E-95 | – | |
| Pfam | 297 | 345 | 49 | 1.1E-11 | ||
| ProSiteProfiles | 298 | 332 | 35 | 12.211 | ||
| TIGRFAM | 300 | 334 | 35 | 5.6E-10 | ||
| ProSiteProfiles | 333 | 367 | 35 | 9.229 | ||
| Coils | 347 | 367 | 21 | - | – | |
| Pfam | 356 | 415 | 60 | 0.0055 | ||
| ProSiteProfiles | 368 | 402 | 35 | 9.295 | ||
| TIGRFAM | 371 | 404 | 34 | 4.1E-6 | ||
| ProSiteProfiles | 403 | 437 | 35 | 8.55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0208300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…