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LotjaGi5g1v0222100.2

Overview

Field Value
Gene ID LotjaGi5g1v0222100
Transcript ID LotjaGi5g1v0222100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Photosystem II reaction center PsbP family protein; TAIR: AT3G05410.2 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|F4J7A7|PPD7_ARATH PsbP domain-containing protein 7, chloroplastic; TrEMBL-Plants: tr|A0A151U4S5|A0A151U4S5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0222100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:52908492..52909534) extracted from Lotus japonicus Gifu genome v1.2.

GCAAGTACCACAACAGTATTGTTTAGTGTTAGTGGGATGGCAGTGCAAGCAAGGTTTGGGGCATGGAACCGAATTGGCAT GGCACAATGTTCAGGCAATCGAGAAGAAAATTTCAAATTCGCAATGAGGTCTCCGGCAGAGGATTTTGCACCACTAGCCA CGAAATTTCAGCGACGGCTTCTCGTGGGCGTCGGGTCAGCTTCACTCGTAGCTTTGGGTGCAGATTTTTGTGGCATAACC AGTTTTCTTCTGGGGTTGTCACCGGAGAACGGCCGTAATCTGAAGCTGGACGTGCTTTATCCCATTGGTGGCTACAGCCG TTGCTTTGACACCAAGGAAGGATTTGGTAATAGAATTCACTTTAAAAATCTGTTATCTATTATTATGTTAACAACCATAT TCATTGACTCCAAGGATGATATATCAGAATTCATATACCCAGCAAACTGGGTTGGAGATCAGACGGTGCTGTATCGAACT GCTAAGAAAAGAGAATTGGAAAGATCATTGGATCCTCCTTCCCTGAATCTACGACCACGTTCGAATGCTAATGAACCCCT AGTTGCATTTGGTCCCCCAGGTTCAAGTGGTGAGCTCAATGTTAGTGTAATTGTCTCCCCTGTTGCTCAAGACTTCTCGT AAGTATCACTCTTAACTAGTAAATACACAAGTCATTTCATCACATACTAAAAGGGAGATTGAGAGCTTGTATTTGTATCT TTTTAACAAGGATTGAAGCATTTGGAAGTCCAGAAGAGGTGGGTGAGGCTTTGGTTAAGACCATAACAGGGTCAGGACAG CGCCCTGAAGTGAAGGGCACATTGATAAACTCAAGTTTGAGGGAGGACTCTGTTAAAAATGCCAAATACTATGAGCTGGA GTTCAGAGTTGAGAGTCCCTCATTCCAGAGGCACAATGTTTGCGTCTGTTGTGCTTGCGGTGGTAGGCTTTTCACTTTAA ATGCTCAGGCACCTGAAACAGCCTGGCCAAGGTTGAAGTCAGATTTCTATAGAATTGCTCACTCATTCAGCCTCACAGCT TAG 

CDS sequence (LotjaGi5g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGTGCAAGCAAGGTTTGGGGCATGGAACCGAATTGGCATGGCACAATGTTCAGGCAATCGAGAAGAAAATTTCAA ATTCGCAATGAGGTCTCCGGCAGAGGATTTTGCACCACTAGCCACGAAATTTCAGCGACGGCTTCTCGTGGGCGTCGGGT CAGCTTCACTCGTAGCTTTGGGTGCAGATTTTTGTGGCATAACCAGTTTTCTTCTGGGGTTGTCACCGGAGAACGGCCGT AATCTGAAGCTGGACGTGCTTTATCCCATTGGTGGCTACAGCCGTTGCTTTGACACCAAGGAAGGATTTGATCAGACGGT GCTGTATCGAACTGCTAAGAAAAGAGAATTGGAAAGATCATTGGATCCTCCTTCCCTGAATCTACGACCACGTTCGAATG CTAATGAACCCCTAGTTGCATTTGGTCCCCCAGGTTCAAGTGGTGAGCTCAATGTTAGTGTAATTGTCTCCCCTGTTGCT CAAGACTTCTCGATTGAAGCATTTGGAAGTCCAGAAGAGGTGGGTGAGGCTTTGGTTAAGACCATAACAGGGTCAGGACA GCGCCCTGAAGTGAAGGGCACATTGATAAACTCAAGTTTGAGGGAGGACTCTGTTAAAAATGCCAAATACTATGAGCTGG AGTTCAGAGTTGAGAGTCCCTCATTCCAGAGGCACAATGTTTGCGTCTGTTGTGCTTGCGGTGGTAGGCTTTTCACTTTA AATGCTCAGGCACCTGAAACAGCCTGGCCAAGGTTGAAGTCAGATTTCTATAGAATTGCTCACTCATTCAGCCTCACAGC TTAG 

Protein sequence (LotjaGi5g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVQARFGAWNRIGMAQCSGNREENFKFAMRSPAEDFAPLATKFQRRLLVGVGSASLVALGADFCGITSFLLGLSPENGR NLKLDVLYPIGGYSRCFDTKEGFDQTVLYRTAKKRELERSLDPPSLNLRPRSNANEPLVAFGPPGSSGELNVSVIVSPVA QDFSIEAFGSPEEVGEALVKTITGSGQRPEVKGTLINSSLREDSVKNAKYYELEFRVESPSFQRHNVCVCCACGGRLFTL NAQAPETAWPRLKSDFYRIAHSFSLTA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 47 47 -
PANTHER 15 266 252 6.3E-108
PANTHER 15 266 252 6.3E-108
TMHMM 48 70 23 -
Phobius 48 74 27 -
Phobius 75 267 193 -
Gene3D 121 265 145 1.8E-37
SUPERFAMILY 128 265 138 2.77E-25
Pfam 138 264 127 5.0E-25

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Cellular component Photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Cellular component Extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0222100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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