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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0222100 |
| Transcript ID | LotjaGi5g1v0222100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II reaction center PsbP family protein; TAIR: AT3G05410.2 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|F4J7A7|PPD7_ARATH PsbP domain-containing protein 7, chloroplastic; TrEMBL-Plants: tr|A0A151U4S5|A0A151U4S5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0222100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52908492..52909534) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGTACCACAACAGTATTGTTTAGTGTTAGTGGGATGGCAGTGCAAGCAAGGTTTGGGGCATGGAACCGAATTGGCAT GGCACAATGTTCAGGCAATCGAGAAGAAAATTTCAAATTCGCAATGAGGTCTCCGGCAGAGGATTTTGCACCACTAGCCA CGAAATTTCAGCGACGGCTTCTCGTGGGCGTCGGGTCAGCTTCACTCGTAGCTTTGGGTGCAGATTTTTGTGGCATAACC AGTTTTCTTCTGGGGTTGTCACCGGAGAACGGCCGTAATCTGAAGCTGGACGTGCTTTATCCCATTGGTGGCTACAGCCG TTGCTTTGACACCAAGGAAGGATTTGGTAATAGAATTCACTTTAAAAATCTGTTATCTATTATTATGTTAACAACCATAT TCATTGACTCCAAGGATGATATATCAGAATTCATATACCCAGCAAACTGGGTTGGAGATCAGACGGTGCTGTATCGAACT GCTAAGAAAAGAGAATTGGAAAGATCATTGGATCCTCCTTCCCTGAATCTACGACCACGTTCGAATGCTAATGAACCCCT AGTTGCATTTGGTCCCCCAGGTTCAAGTGGTGAGCTCAATGTTAGTGTAATTGTCTCCCCTGTTGCTCAAGACTTCTCGT AAGTATCACTCTTAACTAGTAAATACACAAGTCATTTCATCACATACTAAAAGGGAGATTGAGAGCTTGTATTTGTATCT TTTTAACAAGGATTGAAGCATTTGGAAGTCCAGAAGAGGTGGGTGAGGCTTTGGTTAAGACCATAACAGGGTCAGGACAG CGCCCTGAAGTGAAGGGCACATTGATAAACTCAAGTTTGAGGGAGGACTCTGTTAAAAATGCCAAATACTATGAGCTGGA GTTCAGAGTTGAGAGTCCCTCATTCCAGAGGCACAATGTTTGCGTCTGTTGTGCTTGCGGTGGTAGGCTTTTCACTTTAA ATGCTCAGGCACCTGAAACAGCCTGGCCAAGGTTGAAGTCAGATTTCTATAGAATTGCTCACTCATTCAGCCTCACAGCT TAG
CDS sequence (LotjaGi5g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGCAAGCAAGGTTTGGGGCATGGAACCGAATTGGCATGGCACAATGTTCAGGCAATCGAGAAGAAAATTTCAA ATTCGCAATGAGGTCTCCGGCAGAGGATTTTGCACCACTAGCCACGAAATTTCAGCGACGGCTTCTCGTGGGCGTCGGGT CAGCTTCACTCGTAGCTTTGGGTGCAGATTTTTGTGGCATAACCAGTTTTCTTCTGGGGTTGTCACCGGAGAACGGCCGT AATCTGAAGCTGGACGTGCTTTATCCCATTGGTGGCTACAGCCGTTGCTTTGACACCAAGGAAGGATTTGATCAGACGGT GCTGTATCGAACTGCTAAGAAAAGAGAATTGGAAAGATCATTGGATCCTCCTTCCCTGAATCTACGACCACGTTCGAATG CTAATGAACCCCTAGTTGCATTTGGTCCCCCAGGTTCAAGTGGTGAGCTCAATGTTAGTGTAATTGTCTCCCCTGTTGCT CAAGACTTCTCGATTGAAGCATTTGGAAGTCCAGAAGAGGTGGGTGAGGCTTTGGTTAAGACCATAACAGGGTCAGGACA GCGCCCTGAAGTGAAGGGCACATTGATAAACTCAAGTTTGAGGGAGGACTCTGTTAAAAATGCCAAATACTATGAGCTGG AGTTCAGAGTTGAGAGTCCCTCATTCCAGAGGCACAATGTTTGCGTCTGTTGTGCTTGCGGTGGTAGGCTTTTCACTTTA AATGCTCAGGCACCTGAAACAGCCTGGCCAAGGTTGAAGTCAGATTTCTATAGAATTGCTCACTCATTCAGCCTCACAGC TTAG
Protein sequence (LotjaGi5g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVQARFGAWNRIGMAQCSGNREENFKFAMRSPAEDFAPLATKFQRRLLVGVGSASLVALGADFCGITSFLLGLSPENGR NLKLDVLYPIGGYSRCFDTKEGFDQTVLYRTAKKRELERSLDPPSLNLRPRSNANEPLVAFGPPGSSGELNVSVIVSPVA QDFSIEAFGSPEEVGEALVKTITGSGQRPEVKGTLINSSLREDSVKNAKYYELEFRVESPSFQRHNVCVCCACGGRLFTL NAQAPETAWPRLKSDFYRIAHSFSLTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 15 | 266 | 252 | 6.3E-108 | – | |
| PANTHER | 15 | 266 | 252 | 6.3E-108 | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 48 | 74 | 27 | - | – | |
| Phobius | 75 | 267 | 193 | - | – | |
| Gene3D | 121 | 265 | 145 | 1.8E-37 | ||
| SUPERFAMILY | 128 | 265 | 138 | 2.77E-25 | ||
| Pfam | 138 | 264 | 127 | 5.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Extrinsic component of membrane | The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
Expression pattern of LotjaGi5g1v0222100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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