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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243700 |
| Transcript ID | LotjaGi5g1v0243700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55236436..55238330) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACCCCTCCGAGGTAACAAATAGACAAGGCCTACCTGCGTTAGCACATTCTGAGAGCAACGAAAATGAATCTTGTCC GTATAATTTCCGGCGGAAGAAGGCTTCTCCGCCACCTGTGCACGGCGGTTACGGAGGCTGATCGTCCGGCGAAGGGGCGA AGCCTTTATCAAAGGTTATCAGAGTTGGAGAAGACCGGAATGAGCGCGTCACAGACGTTGGACCAGTATATATCAGAGGG CAAAGTCGCCGGAAAGAAGGAGCTCATGAGTATCGTCAAGGAGCTCCGGAAGTATCGCAGATTCCAGGATGCTCTTCAGG TATCAAAATCTTCTGCGTTGAGCTCTATCATAAATCCATTAACAATCAAATGTTTATCTCATTATCAATAGTATCGTCAT AATTTAGTTTTCGATCGAGCTCAATAGCGTAGTGTAGTGTGATCCATATAGCCGACCTCACTTACTGGGATACGGTTTTT GTTATTGTTGTATTCCCTTGCAGATAATGAAATGGATGGAGAGTAGGGTAGAGTCTCCCTTGGATTATAATTATGCAGTG CATTTAGATCTTGTGTGCAAAAACGAAGGGGTGGTTGCCGCTGAGAATTACTTCAATAGTCTTCCTCCTCTTGCCATGAA CAAGTACACATATGGTGCTCTTTTGAATTGTTATTGCAAGGAACTAATGGTAAATAAGGCATTGGCTCATTTTGACAAGA TGAATGAATTGGGTTATGTCACTTTTTTGAGTTTCAACAATCTGATCGGTATGTACATGAGGTTGGGTCAACCACTGAAA GTGCATGAGTTGGTGCATGACATGAAGGAGAGGAACATTCCCATGAGTGCATTCGCATATCATGCGTGGATGAATAGCTA CGCCGCTTTGAATGACCTTGTCGGGGTTGAGAAAATCTATGAACTGATGAAATTAGAAGTTGAAACCAAAATTGATTGGT TGACTTATAGCAACCTTGCTGCTATCTATGTGAAGGCTAAACAATTTGAGAAGGCAGAGTTGATGCTTAGGAAGCTGGAA CAAGCGGTGAAGCCGCGGAAGCGCGAAGCATACCATTGCTTACTGAGTCTTTATGCAGGAACTGGTAATCTTGAAAAGGT TTATAGTTTATGGGATTCCCTCAAGTCAGTCACTCCAGTGCTCAATGTCAGCTATCTTTGCATGATTTCTGCTCTTAAAA GGCTAAATGATATGGAGGGCTTAATCAGGTGCTTTAAGGAGTGGGAATCTAGGTATGGACATTGTGATTTAAGGTTGATT AGTGCTGTAATAAGTGCTTACTTGAGTCATGATATGGGTGAAGAAGCTGCATTGGTGTTTAAGGACGCTATCAAGAAGAG TAAAGGACCTTTCTTTAAGATTCGGGAAATGTTCATGATATTCTTCTTGGAGAAATGTCAATTGGATGGTGCTGTGAGCC ACTTAGAGGCAGCGCTCTCGGAAGTCGTGGGTGATGAATGGCGTCCTACACCACGTGTTTTGAGGGCCTTTGTAAAGTAT TATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCATGACTCACAACTTTGATGATTCCTGGCT TCAGAGTTCCATTGCAGCAGCTGAGTCATCTCCTGAAATTTATCCAATATTGAATGAAGATTCTGTTCTTGAGAACTTGC AAGATGATGTTCACTGTGAATAAGAAAGAACTCTGGTTGGATTATTTGTAAGAACCAGCTAGAAGACTCATTGACAAATT CTATTTAGTATGCTGTACTTGTTTTCCTATACTATTTTGAGCAACTTTTCACTTTGCAAATGATATTGAAAACTTGCTCT CTCCAATGTCACAATTTCTGCAAATCTTTATATTATGCAATGTTTTCCATTCCAG
CDS sequence (LotjaGi5g1v0243700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGGATGGAGAGTAGGGTAGAGTCTCCCTTGGATTATAATTATGCAGTGCATTTAGATCTTGTGTGCAAAAACGA AGGGGTGGTTGCCGCTGAGAATTACTTCAATAGTCTTCCTCCTCTTGCCATGAACAAGTACACATATGGTGCTCTTTTGA ATTGTTATTGCAAGGAACTAATGGTAAATAAGGCATTGGCTCATTTTGACAAGATGAATGAATTGGGTTATGTCACTTTT TTGAGTTTCAACAATCTGATCGGTATGTACATGAGGTTGGGTCAACCACTGAAAGTGCATGAGTTGGTGCATGACATGAA GGAGAGGAACATTCCCATGAGTGCATTCGCATATCATGCGTGGATGAATAGCTACGCCGCTTTGAATGACCTTGTCGGGG TTGAGAAAATCTATGAACTGATGAAATTAGAAGTTGAAACCAAAATTGATTGGTTGACTTATAGCAACCTTGCTGCTATC TATGTGAAGGCTAAACAATTTGAGAAGGCAGAGTTGATGCTTAGGAAGCTGGAACAAGCGGTGAAGCCGCGGAAGCGCGA AGCATACCATTGCTTACTGAGTCTTTATGCAGGAACTGGTAATCTTGAAAAGGTTTATAGTTTATGGGATTCCCTCAAGT CAGTCACTCCAGTGCTCAATGTCAGCTATCTTTGCATGATTTCTGCTCTTAAAAGGCTAAATGATATGGAGGGCTTAATC AGGTGCTTTAAGGAGTGGGAATCTAGGTATGGACATTGTGATTTAAGGTTGATTAGTGCTGTAATAAGTGCTTACTTGAG TCATGATATGGGTGAAGAAGCTGCATTGGTGTTTAAGGACGCTATCAAGAAGAGTAAAGGACCTTTCTTTAAGATTCGGG AAATGTTCATGATATTCTTCTTGGAGAAATGTCAATTGGATGGTGCTGTGAGCCACTTAGAGGCAGCGCTCTCGGAAGTC GTGGGTGATGAATGGCGTCCTACACCACGTGTTTTGAGGGCCTTTGTAAAGTATTATAAAGAAGAAACAGATCTTGATGG TGTTGATGAGTTAAGCAAGATTCTCATGACTCACAACTTTGATGATTCCTGGCTTCAGAGTTCCATTGCAGCAGCTGAGT CATCTCCTGAAATTTATCCAATATTGAATGAAGATTCTGTTCTTGAGAACTTGCAAGATGATGTTCACTGTGAATAA
Protein sequence (LotjaGi5g1v0243700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWMESRVESPLDYNYAVHLDLVCKNEGVVAAENYFNSLPPLAMNKYTYGALLNCYCKELMVNKALAHFDKMNELGYVTF LSFNNLIGMYMRLGQPLKVHELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMKLEVETKIDWLTYSNLAAI YVKAKQFEKAELMLRKLEQAVKPRKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTPVLNVSYLCMISALKRLNDMEGLI RCFKEWESRYGHCDLRLISAVISAYLSHDMGEEAALVFKDAIKKSKGPFFKIREMFMIFFLEKCQLDGAVSHLEAALSEV VGDEWRPTPRVLRAFVKYYKEETDLDGVDELSKILMTHNFDDSWLQSSIAAAESSPEIYPILNEDSVLENLQDDVHCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 387 | 387 | 3.9E-143 | – | |
| PANTHER | 1 | 387 | 387 | 3.9E-143 | – | |
| Gene3D | 1 | 79 | 79 | 2.8E-5 | ||
| ProSiteProfiles | 45 | 79 | 35 | 10.117 | ||
| TIGRFAM | 47 | 77 | 31 | 3.4E-4 | ||
| Pfam | 47 | 76 | 30 | 3.0E-5 | ||
| SUPERFAMILY | 49 | 272 | 224 | 2.98E-7 | ||
| Gene3D | 80 | 186 | 107 | 7.4E-16 | ||
| Pfam | 82 | 111 | 30 | 3.8E-4 | ||
| TIGRFAM | 82 | 114 | 33 | 2.8E-4 | ||
| ProSiteProfiles | 82 | 113 | 32 | 6.686 | ||
| ProSiteProfiles | 114 | 144 | 31 | 6.029 | ||
| Pfam | 117 | 142 | 26 | 1.3 | ||
| ProSiteProfiles | 150 | 180 | 31 | 6.971 | ||
| Pfam | 153 | 178 | 26 | 0.37 | ||
| ProSiteProfiles | 185 | 219 | 35 | 6.5 | ||
| Gene3D | 187 | 376 | 190 | 1.1E-10 | ||
| Pfam | 188 | 213 | 26 | 0.5 | ||
| Pfam | 221 | 248 | 28 | 0.25 | ||
| ProSiteProfiles | 254 | 288 | 35 | 6.95 | ||
| Pfam | 259 | 283 | 25 | 0.72 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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