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IPR000243

Description

IPR000243 is a Peptidase T1A, proteasome beta-subunit.

<p>The proteasome (or macropain) ([ec:3.4.25.1]) [[cite:PUB00000524], [cite:PUB00000148], [cite:PUB00004123], [cite:PUB00001329], [cite:PUB00005460]] is a multicatalytic proteinase complex in eukaryotes and archaea, and in some bacteria, that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). These are arranged in four rings of seven proteins, consisting of a ring of alpha subunits, two rings of beta subunits, and a ring of alpha subunits. In eukaryotes, each alpha and each beta ring consists of different proteins. Three of the beta subunits are peptidases in subfamily T1A, and each has a distinctive specificity (trypsin-like, chymotrypsin-like and glutamyl peptidase-like). The peptidases are N-terminal nucleophile hydrolases in which the N-terminal threonine is the nucleophile in the hydrolytic reaction [[cite:PUB00030848]]. In the immunoproteasome, the catalytic components are replaced by three specialist, catalytic beta subunits [[cite:PUB00065662]]. In bacteria and archaea there is only one alpha subunit and one beta subunit, and each ring is a homoseptamer.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.

Associated Lotus transcripts 13

Transcript Name Description Predicted domains Domain count
PREDICTED: proteasome subunit beta type-5-like [Glycine max] gi|356516569|ref|XP_003526966.1| 14
PREDICTED: proteasome subunit beta type-6-like [Cicer arietinum] gi|502132065|ref|XP_004501214.1| 14
PREDICTED: proteasome subunit beta type-6-like [Glycine max] gi|356507848|ref|XP_003522675.1| 14
Proteasome subunit beta type [Medicago truncatula] gi|357504055|ref|XP_003622316.1| 14
Proteasome subunit beta type; TAIR: AT3G26340.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5; TrEMBL-Plants: tr|I3T0L3|I3T0L3_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0237700 14
Proteasome subunit beta type; TAIR: AT3G26340.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5; TrEMBL-Plants: tr|I3T0L3|I3T0L3_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0237700 14
Proteasome subunit beta type; TAIR: AT4G31300.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6; TrEMBL-Plants: tr|I3SPC4|I3SPC4_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0397200 14
Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi2g1v0125900 14
Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi2g1v0125900 14
Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi2g1v0125900 14
Proteasome subunit beta type; TAIR: AT5G40580.3 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600 12
Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600 14
Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600 14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd03763 CDD 1 7.69