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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0283300 |
| Transcript ID | LotjaGi5g1v0283300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A072VL81|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi5g1v0283300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59974800..59975541) extracted from Lotus japonicus Gifu genome v1.2.
CGCAAGGTTCCCCAATTCTTGACCTAGGTTTGTGTTTCTCTCATTCTTCCCCAAATCTTCCATACTTTTCCCAATTTTTT GACTCAGAAGAACTCCGGCTGCCATGAATCGTGGAGAGCACCAGGCTGCGCCTTCGTCTGCGAGCACGATGAGCGATTCC TCTGTGCGAAGAAGACTAGTTTGTGACTGTGGGGTTGTATCTCCATTGAAGACGTCATGGACCAAAGAAAACCCAGGGCG GCGGTTTTATGGGTGTGGGTTATATCAGGTAAGAAGCACTTAATTTTTCCATTGTTTTTTCTGAATTTGATGCCTAAACT CAAGTAATTTCATTTTGTCAGGGAAGGAAAAGGAGGTGTGGGTTTTTTCAATGGCATGATCAGGAATTTAATCCACGTGA GAAGAAGGTGATTGCTTGGTTACTTACTGTGGTTGAAGGCATGAAGAAGAAGGAGAAATTTTTAGTTCGTTGTCTAGTAA TTTGTTGTGTAGTTATGTTGGCTTTGGTCATTGTAATTGGTTACTTATTGCTGTGCAAGTGAGATATTTATCTGAGATGT TTAGGAAGGCTTAATGATGCTTAGTGTCGAGCTTTCTTGGGTAGATTATGTAGAAGGGAGTAGGGTAGTTAGGGAGTTGG AGTATTTTGTATGCAGAAATGGGATGGACTGGAATTGGTGTATGTAACCCAATATTTTGTAATGGAAATGGCAATTTCTT GCTCTATTTTAATGGAAATTTC
CDS sequence (LotjaGi5g1v0283300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGTGGAGAGCACCAGGCTGCGCCTTCGTCTGCGAGCACGATGAGCGATTCCTCTGTGCGAAGAAGACTAGTTTG TGACTGTGGGGTTGTATCTCCATTGAAGACGTCATGGACCAAAGAAAACCCAGGGCGGCGGTTTTATGGGTGTGGGTTAT ATCAGGGAAGGAAAAGGAGGTGTGGGTTTTTTCAATGGCATGATCAGGAATTTAATCCACGTGAGAAGAAGGTGATTGCT TGGTTACTTACTGTGGTTGAAGGCATGAAGAAGAAGGAGAAATTTTTAGTTCGTTGTCTAGTAATTTGTTGTGTAGTTAT GTTGGCTTTGGTCATTGTAATTGGTTACTTATTGCTGTGCAAGTGA
Protein sequence (LotjaGi5g1v0283300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRGEHQAAPSSASTMSDSSVRRRLVCDCGVVSPLKTSWTKENPGRRFYGCGLYQGRKRRCGFFQWHDQEFNPREKKVIA WLLTVVEGMKKKEKFLVRCLVICCVVMLALVIVIGYLLLCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 94 | 94 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 7 | 99 | 93 | 3.5E-25 | – | |
| PANTHER | 7 | 99 | 93 | 3.5E-25 | – | |
| Pfam | 26 | 69 | 44 | 4.0E-11 | ||
| Phobius | 95 | 119 | 25 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 120 | 121 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0283300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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