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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0296600 |
Transcript ID | LotjaGi5g1v0296600.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chaperone protein htpG family protein; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|Q71EE1|Q71EE1_HEVBR Heat shock protein; Found in the gene: LotjaGi5g1v0296600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61348484..61351028) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGATGTTCAAATGTGTGACGCCGAGACCTTCGCATTCCAGGCTGAGATCAACCAACTCCTCAGCCTCATCATCAA CACCTTCTACAGCAACAAGGAGATTTTCCTCCGTGAACTCATCAGTAATGCCTCCGACGTAAGCCTCTCCTCCTTCCACC ACCACCATTAACATTTTACTTTCCTTCGTTTCGTTAATCACTCAATTTGATTTGTGTGTTTGTTACATTTAGGCTCTGGA TAAAATTCGATTTGAGAGCCTCACCGATAAGACGAAGCTTGATGCTCAACCAGAGCTTTTCATTAGACTCGTTCCTGACA AGGCTAACAAGACTCTCTCCATCATTGACAGTGGCGTTGGCATGACCAAAGCAGGTACGTAGTTGTAATGTACCTCTTTA TCCGTTTTATTTAAATTGAGGTTGCGATCGCGGTTGCAGTTGTCGCGGAATTGTAGACAAATGCAGGTTGATGCGGCCGC AACTGGGTGTGACCCTGAAATATATTATGTTGCGGCCGCAATTTGAAACAATGGTTTTATTGTGAGAATTTGATTAAATG TGCTGTGCTATGCTTCTTATTGTGTGTGTTTATGTGGTGTGGTTTGGTTTCAGATTTGGTGAACAATTTGGGAACCATTG CGAGGTCTGGGACGAAGGAATTCATGGAAGCGTTACAGGCTGGGGCTGATGTTAGCATGATTGGCCAATTTGGCGTTGGT TTCTACTCTGCTTACCTTGTTGCTGAGAAGGTCATTGTGACCACCAAGCACAATGACGATGAACAGTACATTTGGGAATC ACAGGCTGGTGGATCCTTCACTGTGATCAGGGATGTGAATGGTGAACAATTAGGAAGAGGAACTAAGATTACCTTGTTCC TCAAGGAGGATCAGGTAAAGAAATTGAAGTTTTAACTACGATTGTTTTTTCTTTTTCTTTTGGGTGTTTGTTTTAGTCAA ATTGTTAATTGGTTGAGTCTTGTTTGTGCAACAGTTGGAGTATTTGGAGGAGAGAAGGATTAAGGATCTTGTGAAGAAGC ACTCTGAATTCATTAGCTATCCAATTTACCTCTGGACTGAGAAGACAACTGAGAAGGAGATCAGTGATGATGAGGAGGAT GATGAGTCCAAGAAGGAGAAGGAAGGAGAAGTTGAGGATGTTGATGAAGAGAAGGAGAAGGATTCTAAGAAGAAGAAGAT TAAGGAGGTTTCTCATGAGTGGGAACTCATCAACAAGCAGAAACCAATCTGGCTGCGAAAGCCAGAGGAGATTACCAAGG ATGAGTATGCTTCCTTCTACAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCTGTCAAGCATTTCTCAGTGGAGGGT CAGCTTGAGTTCAAGGCCATTCTATTTGTTCCCAAAAGGGCACCTTTTGATCTGTTTGACACAAGAAAGAAGATGAACAA CATCAAGCTTTATGTGAGGAGGGTGTTCATCATGGACAATTGTGAGGAGCTGATTCCTGAGTATCTTGGGTTTGTCAAGG GTGTGGTTGACTCTGATGACTTGCCACTCAACATTTCCAGGGAGATGCTGCAGCAGAACAAGATCTTGAAGGTGATCAGG AAGAATCTTGTGAAGAAATGCATTGAGATGTTCAACGAGATCGCGGAGAATAAAGAGGATTACAACAAATTCTATGATGC TTTCTCCAAGAACTTGAAGCTGGGTATCCATGAAGATAGTCAGAACAGGGCTAAATTGGCTGATTTGCTGAGATACTATT CTACAAAGAGTGGAGATGAGTTGACTAGTCTCAAGGACTATGTTACCAGAATGAAGGAGGGGCAGAAGGACATTTACTAT ATCACAGGAGAGAGCAAGAAGGCTGTGGAGAATTCACCATTCTTGGAGAGGCTGAAAAAGAAGGGGTATGAGGTGCTGTT CATGGTGGATGCAATTGATGAGTATGCTGTTGGGCAATTGAAAGAGTATGATGGGAAGAAGTTGGTTTCTGCTACTAAGG AGGGATTGAAATTGGATGATGAAAGCGAGGAAGAGAAGAAGAAGAAAGAGGAAAAGAAGAAGTCATTTGAGGATCTTTGC AGGACAATGAAGGACATCTTGGGAGACAGAGTTGAGAAAGTGGTTGTCTCTGACAGGATTGTGGATTCACCCTGCTGTTT GGTGACAGGGGAATACGGATGGACTGCGAACATGGAGAGGATCATGAAGGCTCAGGCGTTGAGGGATAGCAGCATGAGCA GCTACATGTCGAGCAAGAAGACCATGGAGATTAACCCGGATAATGGGATCATGGAGGAGCTGAGGAAGAGGGCTGAAGCT GATAAAAATGATAAATCAGTGAAGGATTTGGTGTTGCTTCTCTTTGAGACTGCACTCTTGACTTCTGGTTTCAGCCTTGA TGATCCAAACACATTTGCTGCTAGAATTCACAGGATGTTGAAGCTTGGTCTTAGCATTGATGAGGAGGAGACTGGTGGAG ATGAAGATATGCCTCCACTGGAGGAGGATGGTGCTGAGGAGAGTAAGATGGAGGAAGTTGACTAA
CDS sequence (LotjaGi5g1v0296600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATGTTCAAATGTGTGACGCCGAGACCTTCGCATTCCAGGCTGAGATCAACCAACTCCTCAGCCTCATCATCAA CACCTTCTACAGCAACAAGGAGATTTTCCTCCGTGAACTCATCAGTAATGCCTCCGACGCTCTGGATAAAATTCGATTTG AGAGCCTCACCGATAAGACGAAGCTTGATGCTCAACCAGAGCTTTTCATTAGACTCGTTCCTGACAAGGCTAACAAGACT CTCTCCATCATTGACAGTGGCGTTGGCATGACCAAAGCAGATTTGGTGAACAATTTGGGAACCATTGCGAGGTCTGGGAC GAAGGAATTCATGGAAGCGTTACAGGCTGGGGCTGATGTTAGCATGATTGGCCAATTTGGCGTTGGTTTCTACTCTGCTT ACCTTGTTGCTGAGAAGGTCATTGTGACCACCAAGCACAATGACGATGAACAGTACATTTGGGAATCACAGGCTGGTGGA TCCTTCACTGTGATCAGGGATGTGAATGGTGAACAATTAGGAAGAGGAACTAAGATTACCTTGTTCCTCAAGGAGGATCA GTTGGAGTATTTGGAGGAGAGAAGGATTAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTATCCAATTTACCTCT GGACTGAGAAGACAACTGAGAAGGAGATCAGTGATGATGAGGAGGATGATGAGTCCAAGAAGGAGAAGGAAGGAGAAGTT GAGGATGTTGATGAAGAGAAGGAGAAGGATTCTAAGAAGAAGAAGATTAAGGAGGTTTCTCATGAGTGGGAACTCATCAA CAAGCAGAAACCAATCTGGCTGCGAAAGCCAGAGGAGATTACCAAGGATGAGTATGCTTCCTTCTACAAGAGCCTCACCA ATGACTGGGAAGACCACTTGGCTGTCAAGCATTTCTCAGTGGAGGGTCAGCTTGAGTTCAAGGCCATTCTATTTGTTCCC AAAAGGGCACCTTTTGATCTGTTTGACACAAGAAAGAAGATGAACAACATCAAGCTTTATGTGAGGAGGGTGTTCATCAT GGACAATTGTGAGGAGCTGATTCCTGAGTATCTTGGGTTTGTCAAGGGTGTGGTTGACTCTGATGACTTGCCACTCAACA TTTCCAGGGAGATGCTGCAGCAGAACAAGATCTTGAAGGTGATCAGGAAGAATCTTGTGAAGAAATGCATTGAGATGTTC AACGAGATCGCGGAGAATAAAGAGGATTACAACAAATTCTATGATGCTTTCTCCAAGAACTTGAAGCTGGGTATCCATGA AGATAGTCAGAACAGGGCTAAATTGGCTGATTTGCTGAGATACTATTCTACAAAGAGTGGAGATGAGTTGACTAGTCTCA AGGACTATGTTACCAGAATGAAGGAGGGGCAGAAGGACATTTACTATATCACAGGAGAGAGCAAGAAGGCTGTGGAGAAT TCACCATTCTTGGAGAGTATGCTGTTGGGCAATTGA
Protein sequence (LotjaGi5g1v0296600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADVQMCDAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKTKLDAQPELFIRLVPDKANKT LSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGG SFTVIRDVNGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEEDDESKKEKEGEV EDVDEEKEKDSKKKKIKEVSHEWELINKQKPIWLRKPEEITKDEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVP KRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMF NEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVEN SPFLESMLLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 248 | 248 | 0.0 | – | |
PANTHER | 1 | 248 | 248 | 0.0 | ||
PIRSF | 2 | 490 | 489 | 3.2E-202 | ||
PRINTS | 10 | 30 | 21 | 2.8E-85 | ||
Gene3D | 10 | 215 | 206 | 7.1E-107 | ||
SUPERFAMILY | 10 | 218 | 209 | 2.15E-75 | ||
CDD | 19 | 207 | 189 | 2.986E-112 | – | |
ProSitePatterns | 30 | 39 | 10 | - | ||
PRINTS | 31 | 53 | 23 | 2.8E-85 | ||
Pfam | 32 | 186 | 155 | 1.2E-14 | ||
SMART | 32 | 187 | 156 | 3.5E-9 | ||
PRINTS | 80 | 97 | 18 | 2.8E-85 | ||
PRINTS | 98 | 115 | 18 | 2.8E-85 | ||
PRINTS | 123 | 145 | 23 | 2.8E-85 | ||
PRINTS | 175 | 192 | 18 | 2.8E-85 | ||
Pfam | 189 | 487 | 299 | 1.4E-148 | ||
PRINTS | 193 | 211 | 19 | 2.8E-85 | ||
Gene3D | 216 | 257 | 42 | 7.1E-107 | – | |
MobiDBLite | 220 | 251 | 32 | - | – | |
Coils | 233 | 253 | 21 | - | – | |
MobiDBLite | 236 | 251 | 16 | - | – | |
PANTHER | 250 | 486 | 237 | 0.0 | ||
PANTHER | 250 | 486 | 237 | 0.0 | – | |
Gene3D | 267 | 435 | 169 | 9.6E-83 | – | |
SUPERFAMILY | 268 | 487 | 220 | 1.97E-96 | ||
Gene3D | 436 | 490 | 55 | 1.0E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi5g1v0296600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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