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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036890
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We have found 97 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.771s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0008500.1
n.a. Histidine kinase; TAIR: AT5G35750.1 histidine kinase 2; Swiss-Prot: sp|Q9C5U2|AHK2_ARATH Histidine kinase 2; TrEMBL-Plants: tr|A0A023W2C6|A0A023W2C6_LOTJA Histidine kinase 2; Found in the gene: LotjaGi1g1v0008500 LjG1.1_chr1 1114796 1127418 -
2 domain predictions
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LotjaGi1g1v0009000.1
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163263 1168999 -
3 domain predictions
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LotjaGi1g1v0009000.2
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163263 1175134 -
3 domain predictions
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LotjaGi1g1v0009000.3
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
3 domain predictions
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LotjaGi1g1v0009000.4
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
2 domain predictions
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LotjaGi1g1v0009000.6
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
3 domain predictions
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LotjaGi1g1v0009000.7
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A1J7HUH6|A0A1J7HUH6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1169980 1175110 -
3 domain predictions
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LotjaGi1g1v0013800.1
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792834 1796269 +
3 domain predictions
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LotjaGi1g1v0013800.2
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792982 1795827 +
3 domain predictions
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LotjaGi1g1v0013800.3
n.a. Chaperone protein htpG family protein; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|Q69QQ6|HSP82_ORYSJ Heat shock protein 81-2; TrEMBL-Plants: tr|B6EBD7|B6EBD7_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792982 1795827 +
3 domain predictions
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LotjaGi1g1v0013800.4
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792996 1795827 +
3 domain predictions
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LotjaGi1g1v0013800.5
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|B6EBD7|B6EBD7_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792996 1795827 +
3 domain predictions
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LotjaGi1g1v0060100.1
n.a. Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100 LjG1.1_chr1 8368323 8373712 -
2 domain predictions
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LotjaGi1g1v0178300.1
n.a. MORC family CW-type zinc finger protein 4; TAIR: AT1G19100.1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Swiss-Prot: sp|Q56Y74|MORC6_ARATH Protein MICRORCHIDIA 6; TrEMBL-Plants: tr|A0A151S9S0|A0A151S9S0_CAJCA MORC family CW-type zinc finger protein 3; Found in the gene: LotjaGi1g1v0178300 LjG1.1_chr1 34189923 34204199 -
3 domain predictions
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LotjaGi1g1v0373800.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|A3BE68|OHK1_ORYSJ Probable histidine kinase 1; TrEMBL-Plants: tr|V7AWB7|V7AWB7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0373800 LjG1.1_chr1 85209589 85215639 +
2 domain predictions
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LotjaGi1g1v0663600.1
n.a. DNA gyrase subunit B; TAIR: AT5G04130.1 DNA GYRASE B2; Swiss-Prot: sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TTM7|A0A151TTM7_CAJCA DNA gyrase subunit B; Found in the gene: LotjaGi1g1v0663600 LjG1.1_chr1 122488334 122504884 -
3 domain predictions
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LotjaGi1g1v0762500.1
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133514685 133519558 +
3 domain predictions
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LotjaGi1g1v0762500.2
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133515378 133519076 +
3 domain predictions
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LotjaGi1g1v0786100.1
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135852775 135857792 -
2 domain predictions
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LotjaGi1g1v0786100.2
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853281 135857597 -
2 domain predictions
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LotjaGi1g1v0786100.3
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853494 135857299 -
2 domain predictions
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LotjaGi2g1v0003400.1
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
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LotjaGi2g1v0003400.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
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LotjaGi2g1v0003400.3
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456175 -
2 domain predictions
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LotjaGi2g1v0003400.4
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
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LotjaGi2g1v0003400.5
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
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LotjaGi2g1v0003400.6
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1443526 1456488 -
2 domain predictions
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LotjaGi2g1v0003400.7
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
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LotjaGi2g1v0003400.8
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
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LotjaGi2g1v0020000.1
n.a. Sacsin; TAIR: AT5G23110.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q9JLC8|SACS_MOUSE Sacsin; TrEMBL-Plants: tr|A0A072VS29|A0A072VS29_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi2g1v0020000 LjG1.1_chr2 7301754 7346294 -
3 domain predictions
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LotjaGi2g1v0020000.2
n.a. Sacsin; TAIR: AT5G23110.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q9JLC8|SACS_MOUSE Sacsin; TrEMBL-Plants: tr|A0A072VS29|A0A072VS29_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi2g1v0020000 LjG1.1_chr2 7302593 7346086 -
2 domain predictions
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LotjaGi2g1v0124300.1
n.a. Heat shock protein 90; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|I1L314|I1L314_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi2g1v0124300 LjG1.1_chr2 45664856 45668467 +
3 domain predictions
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LotjaGi2g1v0124300.2
n.a. Chaperone protein htpG family protein; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|I1L314|I1L314_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi2g1v0124300 LjG1.1_chr2 45665174 45668177 +
3 domain predictions
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LotjaGi2g1v0124300.3
n.a. Heat shock protein 90; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|I1L314|I1L314_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi2g1v0124300 LjG1.1_chr2 45665174 45668177 +
3 domain predictions
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LotjaGi2g1v0124300.4
n.a. Heat shock protein 90; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|I1L314|I1L314_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi2g1v0124300 LjG1.1_chr2 45665189 45668177 +
3 domain predictions
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LotjaGi2g1v0289600.1
n.a. Chaperone protein htpG family protein; TAIR: AT2G04030.1 Chaperone protein htpG family protein; Swiss-Prot: sp|Q9SIF2|HS905_ARATH Heat shock protein 90-5, chloroplastic; TrEMBL-Plants: tr|A0A072TVH5|A0A072TVH5_MEDTR Heat shock protein 81-2; Found in the gene: LotjaGi2g1v0289600 LjG1.1_chr2 76276763 76283163 -
3 domain predictions
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LotjaGi2g1v0289600.2
n.a. Chaperone protein htpG family protein; TAIR: AT2G04030.1 Chaperone protein htpG family protein; Swiss-Prot: sp|Q9SIF2|HS905_ARATH Heat shock protein 90-5, chloroplastic; TrEMBL-Plants: tr|A0A072TVH5|A0A072TVH5_MEDTR Heat shock protein 81-2; Found in the gene: LotjaGi2g1v0289600 LjG1.1_chr2 76276763 76283163 -
3 domain predictions
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LotjaGi2g1v0289600.3
n.a. Chaperone protein htpG family protein; TAIR: AT2G04030.1 Chaperone protein htpG family protein; Swiss-Prot: sp|Q9SIF2|HS905_ARATH Heat shock protein 90-5, chloroplastic; TrEMBL-Plants: tr|A0A0L9UT74|A0A0L9UT74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0289600 LjG1.1_chr2 76276763 76283352 -
3 domain predictions
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LotjaGi2g1v0352800.1
n.a. DNA mismatch repair protein MutL; TAIR: AT1G19100.1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Swiss-Prot: sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3; TrEMBL-Plants: tr|G7K2L3|G7K2L3_MEDTR CW-type zinc finger protein; Found in the gene: LotjaGi2g1v0352800 LjG1.1_chr2 82900894 82918702 +
3 domain predictions
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LotjaGi2g1v0352800.2
n.a. DNA mismatch repair protein MutL; TAIR: AT1G19100.1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Swiss-Prot: sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3; TrEMBL-Plants: tr|G7K2L3|G7K2L3_MEDTR CW-type zinc finger protein; Found in the gene: LotjaGi2g1v0352800 LjG1.1_chr2 82900918 82918406 +
3 domain predictions
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LotjaGi2g1v0352800.3
n.a. DNA mismatch repair protein MutL; TAIR: AT1G19100.1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Swiss-Prot: sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3; TrEMBL-Plants: tr|A0A0R0LBF6|A0A0R0LBF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0352800 LjG1.1_chr2 82901712 82916354 +
3 domain predictions
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LotjaGi2g1v0354500.1
n.a. DNA mismatch repair protein mutL; TAIR: AT4G35520.2 MUTL protein homolog 3; Swiss-Prot: sp|F4JN26|MLH3_ARATH DNA mismatch repair protein MLH3; TrEMBL-Plants: tr|A0A0B2RU55|A0A0B2RU55_GLYSO DNA mismatch repair protein Mlh3; Found in the gene: LotjaGi2g1v0354500 LjG1.1_chr2 83078997 83095066 +
3 domain predictions
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LotjaGi2g1v0379900.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87654085 87670051 -
3 domain predictions
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LotjaGi2g1v0379900.2
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87658002 87669871 -
3 domain predictions
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LotjaGi3g1v0054100.1
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632820 5638974 -
3 domain predictions
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LotjaGi3g1v0054100.2
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632920 5639127 -
3 domain predictions
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LotjaGi3g1v0054100.3
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9M7M1|ETR1_PRUPE Ethylene receptor; TrEMBL-Plants: tr|K7LB32|K7LB32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
3 domain predictions
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LotjaGi3g1v0054100.4
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|A0A1J7HIG6|A0A1J7HIG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
3 domain predictions
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LotjaGi3g1v0121000.1
n.a. DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000 LjG1.1_chr3 14822816 14830581 +
3 domain predictions
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LotjaGi3g1v0121000.2
n.a. DNA topoisomerase 2; TAIR: AT3G23890.2 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000 LjG1.1_chr3 14823082 14830141 +
3 domain predictions
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