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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0345600 |
Transcript ID | LotjaGi5g1v0345600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Proteasome subunit alpha type; TAIR: AT3G14290.1 20S proteasome alpha subunit E2; Swiss-Prot: sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5; TrEMBL-Plants: tr|I3S0W6|I3S0W6_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi5g1v0345600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66214643..66219729) extracted from Lotus japonicus Gifu genome v1.2.
CAATGCCCCTTGAACAAGAAAGAATAGCAAATAGCCTAATAAGCAAAACCCCTCTCTCTTCCCTTCACAAACCACAGTCA GTATCAGTAGTCTCAGAAAGCAAGCAAAACCCAGTTCCTCTCTTTTTGGTAAATCTCAAATCGAAACTTTCTCATTCATT CTCTTTTGCGCTTTCATTCTAATCTCTCTTCTCCTTCTCCATTGTTTGCAGCAGTGATTTCATCGAATCGAATCCACCAT GTTTCTCACAAGGTACAAAACCCCTCTTTCCCTCTTTTCTTCGAAACTGGTAAAAAAATTGCATTTAAGGGTTTTTTCAT CTCGCTTGATTCAGCAGAAAAATGGGTTCTCCCCAAAATCTATTAGGGTTTCTTGTTTGCTTGTTCGTTCAATTGATATT GGGTATGTCTGTGTGTGTGAATTAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCCCCTGAAGGCCGTTTGTTTCAG GTTGAATATGCAATTGAAGCCATTAAGGTATGCCTCTCCCTCACGATCTCTCTCCCTTTTCTTCTATTTTTATGAATCTG TAAGAGAACAAAAGGGTTCGCAGCTGTGAGAAGTTTTTTCATTCAGAATTTCATTGTTTTTGGCGGATTTGTATGGAAAA TTGTAACTTTAGTGCTACCTTTTCTTTCTTTGGAATCAAATGTTGGTACTTGTGTTGGTATTTTTGTGTTTATAAATGGG TTTCTATTGGATTGCAGCTGGGATCAACTGCTATTGGGTTGAAGACGAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGCGT ATTACTTCACCGCTGCTGGTATGGTTTTGTTCCATTTACGTAATTTGCAACTACATTAGTGGAGTTTTATAGTCTTATTG TGACACTTCTGCACACAAATGTGCTAGTACTGTTAGCTATAAGTATACAGTTTGACTGTGTTAAAAGTGATTAAGGTGCA TTTGGAGAATATCGATTGTTGACACAGTTGTGCTTCATATAAATTGAACTTTGGGGCCATCCTGTTGTTTTATAGATGTA CTTATGAATCTTGAACTTTGATGTTCATCTTAGATAGTTAATGTGTGCTGTGCTTACTGTCACATACTTTGAAAAATGTT TACTTTGATCTTCTTTTCTCCTTCTATTATTCATTTTGTTTTTGGTGAAAAGAGATCTACTTTTCTTCGGTGGTTAAAGG CTTAATCGTTTGCTCTTTGGATTTGTACTTGCAATAAACCTCAGAATCTCTAACGATATTAATCTAATTTATAGTTCATC TGGATTTTATAAACATGAGCGTCTTGGTGTAATCGCTTCTTCTTTGCACTGTGATTTATGTGGTTGCTTGAAACTTTTCT CTTTCAGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGCGCATATAGGTTGTGCAATGAGTGGATTGATTGCTG ATGCTCGAACACTTGTTGAGCATGCACGAGTTGAAACTCAGGTAATGTGAACCTTATAGGATATTTTAGGTAGTTAGGTA GTTAGGTAGTTTATTAGTTAATGATTGATTTATATTGGTTTATTCTTCACAGAATCATAGGTTCTCTTACGGTGAACCAA TGACTGTAGAGTCCACAACTCAAGCTCTTTGTGATCTAGCCTTACGTTTTGGTGAAGGCGATGAAGAGTCCATGGTAAAG AACTTCTTAGTTTTGATATTCATTTCTCTTTTTGTTTGCTTGCTTATGATGCTTTGATAAACGCCAAACAACTTATGAAG GATTTAGGTATTGCATTTGTTTTAAGAGATATTTGGTTTATATGGTCTATCACGAGAACTGATTCATGATAGCATCGTTT AATCCATGTAGCTGACCCTGCATAATGGATGTTAATTAGAGATATAAAAATGCCTATCAAAAAAAAAAAAATTAGAGATA TAAAAAGAGTTCATGTTATTTACTACTTCAAAATTATGGGTGCCAAGTGCCTACATGTCCACATCTCAACAGCAACTTTT GAATACATAACATTTCTAAGTAAAGCTGTAAATCCTTGTGTAAGGTGCTTTCATATACATGTGCCAGTAAACCTTTTCCT TCTGTACAAAATACTAAACTCTGGTGGTCCTGCAGCAGTAGACCATCCTGTTAGCATTCTAACTTATACCATATCTTTCT CTTTGGCAGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCAGGCCATGATGAGAATGGACCTAGTCTGTAAGTTTCCAT TCTTTCTAAGCAATTGCTACTTGTTTGTAATATGATGGGGTCACCCCTGTTACTCGTTTTCTGTATTCAACCAATGATTG CTTTAAAGGTTTGTTTTTCTGAATCTATGATACTGGTGATCTTTTTTGAAATGATGGTTTTTGTTCCTTGTATCTTATGG TTTGTTTTCTCTCTGGGGATCGGTGAACAAAGACAGGAATTCTGGGGGGAAAATGAATCAATTATTTATTTTTCTAGTTA CTCTTATCACCTTATGTAGAGAGCGGTTCATGAGTAATCACTTGTAGACTTGATTAATTGAGGAAAAAACTACAAAATAG GCCATAAATGTTCAAATGGGTCATTTATGCTTTTAGATGGAGCCAGGTCAGGTACTGGGGGTCTTGGGGCTGTGTTGGAA AAACTAGTCTGTAGTACACACGATAGGATCCCACTGACTTATGATTTTAAACATAGATTCCGCGAAATTGAGTTCCAAAG CATGATTGGGATTGATCTGGGTGCCCAATATTGTACAACCTTATGCGTCAACTTGCCATTTTAACTATCATGATTCATGA TATCCTCTTCTGTTGTTACGTCTTCCACTCTCTCTATTTTGTTTATTCTTAATTCTTCCTTTCTCAAAAAATAATTGTTA ACGATATTTGCCATGTAGTACGTCCTCACCTTTTCTTATCATTATTTTTAGATTAAACTGTCTTAACAATTACTTTATGC AAATACTTGTACAACAAAGAGAGAGATAAGAGGAGAGAAGTGTTGGATGTGGTGGTTGATATGATGGAGAGAGGTAGAGA AGTTGTTTTAGGTTCAGCAATATACCTCCTCTTAACATGGATTTGTGGTGTACACACATTTATTTCTGTTTGGTTTAGCC GTCTACCCTGCAAGTTCAATTCTCATAGCAAAGCATATATAATTGACCTCTTAGCTTCCTCATTCAAACTAGTTCATGGT AGCAAGCACTTTTTCTACCTTAAGCGTAAACAATTTTCTCGCTGTTCATGTATGTTAGAGATGCATTATTGCAGATTATT GTTTAAACATAAAATAAATACACTGCATGGATATTTTGTTTTTAAAGCCTGGGCTCCATTACTTTAGTAACTGGATGGTG CTGTTTAGTCTACTCCTGCTGGTCATGTTCCTATGCCTTTTCATTCTGGGCTTCTTATCTATGCGCATGTTTAGGTTGCA TTTTGCATCTTCCAAACCTTAGTTTGGTAAGTGTAAACTGAGTTTCATCCCCAAACAACATATATTGCAAAGTCACATTG ACTTACATTTGAACATAATTTTGAGTCTAATACCATGGTTTGAGTTAAAGCAAATTGAAGTTGCTTTCCTGTTGAATCAA ATCCTGGTTTGCAAACCACTTTCCGAACATAGCTTTACTGAACTAGTGAATTCAAATGTTCTGATTTGCAGATATTATAC TGATCCGTCTGGCACATTTTGGCAATGCAATGCAAAAGCCATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAG AACAATACAACAAGGTATCTATGTTCTTCAGTGGGTTGTTTCCAAACTTTTTATCCTGCTTATAACAGTAAAATTATACT TGGCTGGGATTGGAAAGTAAATACAGGAGTGAAACATGAAGACATGAGTAGACTTCATATTTGACAGGGTAGGTAGAGAA GAATGAAAACATGCTATACAATAATTACCTTAATATCACATTATAAATAACATATCTAAGGGTTATAACACTAATCAAAC AATTAATTAATTTTATATGAAATCTAAAAAAAATCAATATTTACCTAATGCTTCATTAATTCACAAGATCAAACAAACCC TGTCAATGATGATGATGAACAGACATGATATCTTTCATGCTAGAGCCATTAACATTAACATGAAATGAAAACAAGAAAAT TTGGTCTTAATTTATCATTTTGTGCAGGAACTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAACAGGT TATGGAAGAGAAGGTAAGGTTCAAATTAAATGCATGTACTTTTAATTGTTTGCCTTTCCCTCTGAAATGGAATGGAAAAA AAATCTAACTTGTTGCTTTTGCATTTTTTTTTCCATCTCAGGTTACTCCCAACAACGTGGACATTGCCAAGGTTTCTCCA ACATATCATCTCTATACACCCGCTGAGGTGGAAGCTGTGATAAGTCGCCTATGATTTCCTTTAGTGCGATTTGCTCTCTT CAGCATTTGTTTCCTATTCTTCCTGCATGTACTCCTATTTACTAGTTTTGCACTGAACCTTTTGTGGTGGATGTTACTAG CATTGCTACACGTGTGGCTAAGTTGTACTCTATAATAGATTCTCATGTCATATTTGCTACATTCAGTCAAGTTGGAATTG AGGACTAAAGGTTTCAGTGTTTGAGAAAAAACATTACATGAGTGCACTCGTCTTTAACTGTGGACAACCACCGTGGTTGC ATATTTTTGCTATATGATGTCAAGGTGTGGGTGAAATCTTTAAAACAAAAGCAAACAGAGGTTCAGAAATTCAAATTTTG TTTTTACTATTTTCCCCCTTATTTTTTGCTCCTTTCTTTGCAATTACCAACTACTAGTTGGAAATCATTTGATAAAAAAC ATGGTTGTGTGTATGTGGCTAGCTTATTTATTTGGTGGGTGGTGTGGTGTTAGTTTTGATAAGTCCCTACTTAATAGTGG ACAGTATAAATTATGGTCAAGATATAGGACTTCAATGTCTGACTGAGGCTCAAGGCCCATTTGACAGTTCAGTGTGAAGA TAATTTTCATATAAGAAATAATCAAGATTAAAAGTAATTGGAAGGTG
CDS sequence (LotjaGi5g1v0345600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCCCCTGAAGGCCGTTTGTTTCAGGTTGAATATGC AATTGAAGCCATTAAGCTGGGATCAACTGCTATTGGGTTGAAGACGAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGCGTA TTACTTCACCGCTGCTGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGCGCATATAGGTTGTGCAATGAGTGGA TTGATTGCTGATGCTCGAACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCATAGGTTCTCTTACGGTGAACCAAT GACTGTAGAGTCCACAACTCAAGCTCTTTGTGATCTAGCCTTACGTTTTGGTGAAGGCGATGAAGAGTCCATGTCTCGAC CATTTGGAGTGTCTCTCCTCATTGCAGGCCATGATGAGAATGGACCTAGTCTATATTATACTGATCCGTCTGGCACATTT TGGCAATGCAATGCAAAAGCCATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATACAACAAGGAACT AACTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAACAGGTTATGGAAGAGAAGGTTACTCCCAACAACGTGG ACATTGCCAAGGTTTCTCCAACATATCATCTCTATACACCCGCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA
Protein sequence (LotjaGi5g1v0345600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDAHIGCAMSG LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTF WQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 237 | 237 | 8.7E-166 | – | |
PANTHER | 1 | 237 | 237 | 8.7E-166 | – | |
Gene3D | 1 | 237 | 237 | 6.9E-93 | ||
SUPERFAMILY | 7 | 234 | 228 | 1.14E-76 | ||
CDD | 8 | 218 | 211 | 1.26425E-154 | ||
SMART | 8 | 30 | 23 | 7.7E-11 | ||
Pfam | 8 | 30 | 23 | 1.2E-13 | ||
ProSitePatterns | 8 | 30 | 23 | - | ||
ProSiteProfiles | 23 | 234 | 212 | 84.952 | ||
Pfam | 31 | 218 | 188 | 1.3E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
Cellular component | Proteasome core complex, alpha-subunit complex | The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. | ||
Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi5g1v0345600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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