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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345900 |
| Transcript ID | LotjaGi5g1v0345900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G35130.3 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130; TrEMBL-Plants: tr|A0A0R0EL25|A0A0R0EL25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66254206..66257666) extracted from Lotus japonicus Gifu genome v1.2.
GCAACTTCATTTGAAGTGGCATTAGTTATACTTAACTGATGCTGTTAATCTGCAGGTTAAATTCTATATGCACAGTGAAG TTGAACCACACATTTATAGAACCAAGAGCTTGCATTAATGAATTTGAATGGAAATCAAATGATGCCAGTGGTGTGGCTCT GGAGAAGTTCAAGAGAGACAGTGTTTACATTGACAAAGCTGGCAAGTTAAGGAACTTCAATCACAAGAAACTGTCCAGGA AAAAATGTAAGTAATGCTTTGCTGAAACACAAGTTCATACATTGAATTGGAAACATGTGTTAATTGGAATGTGTGTCATT TTCTCTGACCAGGTGGTTCTTTGAGAGGACGAGGATGGAAATTCGGTTCTGGGTTTGTGGATGGGATTTTCCCTGTTTTG AGCCCAACTGCAAAGAAGATTATGGATTATCTTCAAAAGGGTGTAGATACTGAGAGCATTTGGGGTTCCCTGGACATGCT TCAAGCATCTCTTGAAATATGGGATGACATTTTAACTGTGTCTGTTCAACTTCGGATGAGGAAACAGTGGGATTCAATCA TTTCGGTGAGAATATCTGCATGCCCTCTAGCAGTGCTTATTTGAGCTTATCTTACAGCATAAGGACGCTTCTCAAATTAG CTTATGAATAATTACTTAATGAAGGTGTTTACCCAAACATACCTTAGTTTGTTTTTCATATCTCAATGGATTGCCATTTC AGGATTATTCATGTAACACAGTACTTATTGACACCTCGAGACATAAGTGTTCAGATTGTGCCTAAACAGTTAATCAGACA AGTATCAAAGGAGTGTTTTTGCACTTTTTCTGAAAGACCTTTTAATGTGGTTACCTGCTCTAACTACCTTTCTGCCTCTA GCAGATTTTCCTTACCTAGTACAATTTTTAGCTATCAAAATATTTGAAGAATGAAGGTTGTCTTCTCTTTCCTCTTGTAA GGTTTTACCATTGAATCCATCATATGTTCATGATTCATGTGTCAGTTGTTAGAAATAATTAAAACCAATTCATGTATCTC CATCCAAAAAGTCTAAGCAGTTAAGTGAAAATACATGAATGTTGTTATTATTTCGAACACAAGCATCTATTTAGCAGGAA TTGGTATGGGACAATATCATATGTATGTGGAAATGGCTCTTGTTTTTGTTTATTGCAACTTTTTCTAGTTTTGGGTTTTG CTCTTTGAATATTATAGGACATAACCGAAAAAAAATTGTGCAGATATGCAGATGGATACTTCTAAGAAGCTCCTTCAAGC AAGATGTTATATGCTATAATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTT CAGCTTCTTGAGGCTAGATGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGCCTACTGCTTGTCCGGGCTGCT TGAAAAAGCTGAAGCTGTCTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTAGGTTCCTGCATCAAAATTTTATAC CATTGTTTCGAACAACTTGTATATACATACATTTATGAAGTGGAAATTTGATCCTCGAAAATAGTTGAACATTTATCAGA ATGAATAACTCAGGTGCAGTTGTATACAACTCTTACATAAATGGATTAATGAAAGGAGGAAATCCAAACAAAGCAGAAGA GATTTTCTTAAGGATGAAGAGGGATGGCTGCAAACCATCTACTGAAACTTATACCATGTTGATAAACTTATATGGGAAGG TCAGCTTATTAGATCTTCACATTGCCCACATGTAGCATGGGGTCCATAACTTCTCTAATTCTTGACTGTGAAAGTTTGGA ACTGAACTTCAAATTGTTTTGAAATATGAATTTTGTGCAGGATGGTAAATCTTTTATGGCCTTAAAAGTGTTCAATGAAA TGCTGAGCCATAAGTGCAAACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTGCCAGAGAGGGACTATGTGAG AAGGCAGAGGAAGTATTTGAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCTTACAATGCCCTCATGGAAGC TTACAGGTTGTTATAGAAGATGCTATAAATGCCTTCTTGATTGATGAATGCATATGCCTTTAAACTATTTGGTTCCACTT GGTATGTTAGAGGGAAAAAAATTAAATAGTACATACATAGCCTCCTACCTTAAAAGCAAGACAGTAACATTTATGTTAAG GTATTCACATTTTTAATTTTTTTTAAGATTGAAAAAATGGAAAGAATAATAGTCAGTTTGTCACATTGTTAGAGTGCATT TACCGAATCTTCAGTACTACAGGAGTACTGAAAATTTTCTCCGGAAATGTGCTTATGTTAATAACACTACCACTTAGTCT TTGTAGTGCTTTAAATTAGTCTTATGGCCTTTTATAAGAGCTACATTATGATGTCGCATTGACTCCCTTTGCTGTGTTGA TAGGTGCTCTTCCCATTCCATTTTTTTTCATTTCTCTGTTATCTTAAAGAGGATGCCATGTACTTTGAAACCTTGATGTG AGTTATTTTCTGCTATAAATTTATATCTAAGAAAGATATCAAGATTTTTCTTCCCCCTACAGTCGTGCAGGTTTTCCTTA TGGGGCTGCAGAAATTTTTTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCCTATAATATCTTGGTAGATG CATATGGCAGAGCAGGTTTTCTAAATGGTATTTACCTTGCATTAAAAGTAATCATTTTATTTTGCTTATTTACATGTTCT ATTATACTAATGGATTGAAACACATGCTGAGCAGATTGCTTTCCTTTCTTGTCTTTTTTGAATGATTGAAACAGATGCCG AAGCTGTATTTGAAGACATGAAAAGAGTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCC AAAACTGGCAATGTGAGTAAATGTGAGGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCT AAACAGCATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGAT CATGTGAAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGC CTATTTCGATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAA GAAGCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGG TGCTCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAA ACTGTTATGACACCAGTATAA
CDS sequence (LotjaGi5g1v0345900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTTAATCTGCAGGTTAAATTCTATATGCACAGTGAAGTTGAACCACACATTTATAGAACCAAGAGCTTGCATTAA TGAATTTGAATGGAAATCAAATGATGCCAGTGGTGTGGCTCTGGAGAAGTTCAAGAGAGACAGTGTTTACATTGACAAAG CTGGCAAGTTAAGGAACTTCAATCACAAGAAACTGTCCAGGAAAAAATGTGGTTCTTTGAGAGGACGAGGATGGAAATTC GGTTCTGGGTTTGTGGATGGGATTTTCCCTGTTTTGAGCCCAACTGCAAAGAAGATTATGGATTATCTTCAAAAGGGTGT AGATACTGAGAGCATTTGGGGTTCCCTGGACATGCTTCAAGCATCTCTTGAAATATGGGATGACATTTTAACTGTGTCTG TTCAACTTCGGATGAGGAAACAGTGGGATTCAATCATTTCGATATGCAGATGGATACTTCTAAGAAGCTCCTTCAAGCAA GATGTTATATGCTATAATTTACTGATAGATGCTTTTGGGCAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTTCA GCTTCTTGAGGCTAGATGCATTCCTAATGAAGATACTTATGCCCTTCTTATAAAGGCCTACTGCTTGTCCGGGCTGCTTG AAAAAGCTGAAGCTGTCTTTGTTGAAATGAAAAATTATGGCCTTCCTTCAAGTGCAGTTGTATACAACTCTTACATAAAT GGATTAATGAAAGGAGGAAATCCAAACAAAGCAGAAGAGATTTTCTTAAGGATGAAGAGGGATGGCTGCAAACCATCTAC TGAAACTTATACCATGTTGATAAACTTATATGGGAAGGATGGTAAATCTTTTATGGCCTTAAAAGTGTTCAATGAAATGC TGAGCCATAAGTGCAAACCTAATATTTGCACTTACACTGCTCTGGTGAATGCATTTGCCAGAGAGGGACTATGTGAGAAG GCAGAGGAAGTATTTGAGCAAATGCAAGAAGCTGGGCTTGAACCTGATGTATATTCTTACAATGCCCTCATGGAAGCTTA CAGTCGTGCAGGTTTTCCTTATGGGGCTGCAGAAATTTTTTCATTAATGCAGCACATGGGATGTGAACCAGATAGAGCCT CCTATAATATCTTGGTAGATGCATATGGCAGAGCAGGTTTTCTAAATGATGCCGAAGCTGTATTTGAAGACATGAAAAGA GTGGGAATAACACCAACAATGAAATCCCACATGGTACTTTTATCTGCCTTTTCCAAAACTGGCAATGTGAGTAAATGTGA GGACATTCTCAACCAAATGTGCAAATCTGGCCTGAAACTAGACACTTTTGTTCTAAACAGCATGCTGAACTTGTATGGAC GGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCATGTGAAGCTGATATTAGCACATAC AATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTATTTCGATTGTTGCATAGTAAAGG TTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAAGCTTTATGTAAGGTGCTTAGAAA TATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGCTCCTTGCAGCATGCTCCAATGAA GATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACTGTTATGACACCAGTATAA
Protein sequence (LotjaGi5g1v0345900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLICRLNSICTVKLNHTFIEPRACINEFEWKSNDASGVALEKFKRDSVYIDKAGKLRNFNHKKLSRKKCGSLRGRGWKF GSGFVDGIFPVLSPTAKKIMDYLQKGVDTESIWGSLDMLQASLEIWDDILTVSVQLRMRKQWDSIISICRWILLRSSFKQ DVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYIN GLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEK AEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKR VGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTY NILINRYGQAGFIDKMEGLFRLLHSKGLKPDVVTWTSRIGAYSKKKLYVRCLEIFEEMIDSGCYPDGGTAKVLLAACSNE DQTEQVTTVIRTMDKDIKTVMTPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 117 | 244 | 128 | 8.1E-24 | ||
| SUPERFAMILY | 140 | 368 | 229 | 4.71E-7 | – | |
| PANTHER | 143 | 302 | 160 | 3.4E-97 | – | |
| ProSiteProfiles | 161 | 195 | 35 | 9.087 | ||
| Pfam | 161 | 208 | 48 | 8.4E-8 | ||
| TIGRFAM | 163 | 197 | 35 | 9.8E-4 | ||
| ProSiteProfiles | 196 | 230 | 35 | 11.488 | ||
| TIGRFAM | 199 | 229 | 31 | 2.8E-6 | ||
| ProSiteProfiles | 231 | 265 | 35 | 12.463 | ||
| Pfam | 232 | 276 | 45 | 8.6E-13 | ||
| TIGRFAM | 233 | 266 | 34 | 3.0E-9 | ||
| Gene3D | 245 | 354 | 110 | 5.0E-36 | ||
| ProSiteProfiles | 266 | 300 | 35 | 11.235 | ||
| TIGRFAM | 269 | 302 | 34 | 5.1E-9 | ||
| PANTHER | 285 | 405 | 121 | 3.4E-97 | – | |
| Pfam | 300 | 348 | 49 | 5.9E-14 | ||
| ProSiteProfiles | 301 | 335 | 35 | 13.263 | ||
| TIGRFAM | 303 | 337 | 35 | 4.0E-10 | ||
| ProSiteProfiles | 336 | 370 | 35 | 12.156 | ||
| TIGRFAM | 338 | 371 | 34 | 1.4E-7 | ||
| Gene3D | 355 | 436 | 82 | 1.0E-15 | ||
| Pfam | 366 | 399 | 34 | 3.6E-10 | ||
| ProSiteProfiles | 371 | 405 | 35 | 13.11 | ||
| TIGRFAM | 374 | 406 | 33 | 1.4E-8 | ||
| PANTHER | 391 | 573 | 183 | 3.4E-97 | – | |
| ProSiteProfiles | 406 | 440 | 35 | 8.769 | ||
| TIGRFAM | 412 | 442 | 31 | 1.5E-5 | ||
| Pfam | 412 | 438 | 27 | 0.0019 | ||
| ProSiteProfiles | 441 | 475 | 35 | 8.879 | ||
| TIGRFAM | 444 | 476 | 33 | 0.0012 | ||
| Pfam | 445 | 470 | 26 | 0.066 | ||
| Gene3D | 449 | 579 | 131 | 1.1E-26 | ||
| ProSiteProfiles | 476 | 510 | 35 | 11.641 | ||
| Pfam | 478 | 508 | 31 | 2.2E-5 | ||
| TIGRFAM | 479 | 512 | 34 | 2.0E-8 | ||
| Pfam | 510 | 558 | 49 | 6.6E-8 | ||
| ProSiteProfiles | 511 | 545 | 35 | 11.17 | ||
| TIGRFAM | 513 | 546 | 34 | 4.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0345900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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