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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350100 |
| Transcript ID | LotjaGi5g1v0350100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: AT4G38510.5 ATPase, V1 complex, subunit B protein; Swiss-Prot: sp|Q9SZN1|VATB2_ARATH V-type proton ATPase subunit B2; TrEMBL-Plants: tr|A0A072VSL4|A0A072VSL4_MEDTR Archaeal/vacuolar-type H+-ATPase subunit B; Found in the gene: LotjaGi5g1v0350100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66611481..66616041) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATCAATTAACATTGATAACTTAAGTCGTTCGTTCCTTTGTCATTTAGTTTCCCTCTAAATTGTTTTGTTGTTGACT TTGTTCGTTGACATTGCAGAATACCGAACTGTGTCTGGAGTTGCTGGACCGTTGGTCATCCTTGATAAAGTTAAGGTAAT GACAGTCTGCTTGCTGCCTGATATTCATATGGATATTTTGATCTTTTGACTTTGCCAATGACGTTGTCTCTGGATTTCTG CATGGTGTGACTAAATTTTACACTGATGAATTGCATCAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGA TGGAACTACTCGTCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTGAGAGCCTATATAGCACATG CATTGAATCATCTTCTGTATAAATTTGTCTCTTATCTTCGAGTTCATGTCTTTAGGATTTATGTGTTTATTTTGTATGCA TAACCAAAACATTCTAAGCTTCACGAGTAGTATTGTTTGTATAAGATCTTCATTGTTGTCTCTTTCGTCCATGTAGCTGC AGTGACTTTAATAGCAAATAGTTTTGTCACTGTTTAGGTTTAATATTCTGCCAGCGTTGTTAGCAGCATTTTCAAGTTTA TCGACCTTTTTTCCCTACTATTGATCAGGTATTCGAAGGTACATCTGGGATTGACAATAAATTTACGACTGTGCAATTTA CCGGAGAGGTATAAACTCTTGATTATTACTATCCTTTCTATGTTCAAAAGTAAACGTGAAGCAATGCATGCAAATTTCTT GATTTTTACTTCAGTTAATATGCTGTTTGATGACGTCTATCTATATGACTATATCATTGAAATTTTGCTACTTCCGGACC TAAATAATGCACTAATTGTTAGTTTGGGATTTCTATTTTGCTTTGGAAAACACAGAATTCGGCTGACCATTTGCTGGCTT TTAAAATGCTGTCTTCTAAATTATCCATTGAGTAATTAAGAGAAGCCCAATTTAGCTGAGTATTGAGTGTTGAGTATTGA GTTGAAACTAAAGTTCTTCCTTCAATTTATTTGATATGTAACTTTTATTATATGGAACCAATTCGTTCCACCTTTGACTT CCTCCATTCTTCTCTTCTTGTTATATTTACAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTCAAT GGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATATATCAGGTATTTAATTTCTGCA CTTTTCTACTACTGCATGTTTGTTGATGTCGGATTTTCTCCCATAATGTCTTCCCAACAATTCAGGAAGTTCCATCAACC CTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGT CAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATATGTCGTCAGGCTGGCCTAGT CAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGTACAGCAAAGTTGCTAGTGTTCATTTCATCAAATATGTTAAATGC TCTTGAATTTAACTTTTCGCAATCGGTAGAGATTTGTGTTCCATTATGACATTCCTTATTTATGGTTAATGATGATGACA ATGGCGATGTATAGGAAAAGAAATATTATTAAATAGGAAAGGAAAATTACAAAAGAGGATAAAGTATCCTCCAAAATAAA ATATAAGGCTGATGGATGATTAAAGAACTGTTATGAAGAAGCTGAGATAAAAAATTTGAAATTACTTCAATTTTTTTATT GCTTTTAGATATACTGCTTATCATTGCCTTTAGATTAATAAGGCTATTTTCTTATATGAAGGCGATGTTTCTTACAGATA CACTCTTTTTACTGAAATCATTACTTCTATACTTTCTGTATATGAAGGCGATGTTTCTTACAAATCTTGTTTTCTGCAGG GTGGAGAAGATGACAATTTTGCCATTGTGTTTGCGGCTATGGGAGTTAACATGGAGACAGCACAGTTTTTCAAACGTGAC TTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGTAATCTCTAGATATCAGTATGCAAATATTCT TTATTTTCAAATGTGACTTTGAGCATGCAAGTATCTCTGATTTTTTTCATCATTTTCCTTTTAGTAGTTATGCATTTACA GTTTATGAATTAAAGGAAATAATGGTCCTTATATTGATATTGTTTTAGAATACATGCTTGGAATTTGCTATAAATTTAGT TTGTTGTTTTATCATTCATAATGGCCCTTATTAAGATTTTTATTCTCTGGAGACCCAATCTATGCATTACAAAAAAGTAT TACTTTCCGCTCTTCATATGTAAATCTAGCATATTGATTGATGGATATATGTATATATAAGGGGCCATATGTCCATGATT AATGCTTAACTATTTTTTGGCTTGTTAACCTAAACCAAGCACATATGCCAATTTTAGGGGGGGAATAAATTTTCTGGGAT GTACCAGCTGATGATGTTAATTTTAAATGATAATGGAGTATGTTAGTTTTTTGTTATTAAAAGATGGATGGCCTTAATTT TTTTTTAAGTGGATCATAATTGTATTTGAGGAACCCAAGGTGACATAGAGAATAACCTTTTAAAAAATGAAATTCAAATG AAGCATCTACTGTAATTTTGAAAATTTGATTTCTTGACCTGCTCGAAGGAGCTGCTATTAACATGTTTGTTCTCTTGCCA TTGTGGTACACTGCAGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATT TGGCTTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTAATG TTCCTTCAACTGTAATTTCTTAGGGAAACGAATCAACAAAAGAAAAGAAAGAGGAGATAAACCTTGTACTGCCTTTACCA TTCTCCTGGGTTTAATGATAATTAAAAATTGACACTGCTTGGATCTTTTGCTTAATCTTGTAGTATGAAAAGTAACTTAA AATATGTTTAAATATTTCTTGAACATTTTTCATGACACAAGCTATTGATCACTTCTTGGTCCTATAGGTATCTGCTGCCC GTGAAGAAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGA ATTGAGGGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGGTAATGAAATATTATAGTTTCT TAGCTAGCTTGTAAAACATTTACGGGGGTGATCATGTTTCTTGAACTTCTTTTGTACAGATATTACACATCCAACTCCTG ACCTGACTGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGACAGGTAGGTTCAGCTGGAATG AATACTATACACCATGTTGAATTAGTTACTGGATTAGTTAGAAGAGAAAATTTGGGGCAGAATGAATCCCGACATTTAAT TTAATGTGATATTGCTTTAAGAATACTAAATCGTTGGCTTGTTATTTAATGGAAGTTAGTACTCTCTCTGGGAAATTTAT TGGTTTCTCCCATCTTTTTAATGCTCTTTCTATCTTTTCTTGGCTCTAACTAAGAGTTGAAATATTCTGATTTTATTTTC ATTGATAAATCAAATCAAAATGATGTATTTATGTCAGTATACAATCAGTCAAGATGACCTGGTAACATTGTTTTTTATTG GGCAGATATACCCACCAATCAACGTCCTTCCCTCACTTTCTCGGTTGATGAAGGTAAGGTCAAACTTGTTTTTTTGATAA TAAATTTGCAGTTCTTAATTAAAAAGTGAGTGGTTCACTCTTTAATGATGCGTCATTGGCCACCTCTGCAGAGTGCCATT GGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGGTATTCTGTTATTTGTTCATCATATACTTGTTTCT TTTATATTTATAAACCTTATCAGCGTTATTTTTTTTCTTTCCAGCTATATGCAAATTATGCCATTGGAAAGGATGTTCAG GCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGTCTCTGCTAATTTTATTTCTAAGGATATTTT GTTTGTTCTAATGAAATTATCCTTGAAGTAGTACTAATGAAACTTAATATTTTACCTTTTGTTAACAGCTTTATCTGGAA TTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTTGATCTTGC ATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAG ATGCTGGTAATTGATGAGCAGGCAAGTTCATATAGCTTGGTCTCAGCGCCTAAAAGCATCAGCCATTAGTTCGCTTCTTA G
CDS sequence (LotjaGi5g1v0350100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGACGCATATTCAATGGTTCTGGAAAACCAATTGATAACGGTCCACCGATTTTGCCTGAGGCTTACTTGGATAT ATCAGGAAGTTCCATCAACCCTAGTGAGAGAACGTATCCTGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCA TGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAAATA TGTCGTCAGGCTGGCCTAGTCAAGCGATTAGAGAAGTCTGATAACCTTCTTGAGGGTGGAGAAGATGACAATTTTGCCAT TGTGTTTGCGGCTATGGGAGTTAACATGGAGACAGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGTTCAATGGAGA GAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCT GAATATTTGGCTTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGA GGTATCTGCTGCCCGTGAAGAAGTGCCAGGAAGACGTGGTTACCCTGGTTATATGTATACAGATCTTGCAACAATTTATG AACGTGCTGGAAGAATTGAGGGACGCAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACA CATCCAACTCCTGACCTGACTGGATATATCACTGAGGGGCAGATATACATTGATAGGCAGCTGCACAATAGACAGATATA CCCACCAATCAACGTCCTTCCCTCACTTTCTCGGTTGATGAAGAGTGCCATTGGTGAAGGAATGACTAGAAAGGATCATT CTGATGTGTCCAACCAGCTATATGCAAATTATGCCATTGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAA GCACTTTCATCTGAGGACCTGCTTTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCTTATGA CACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTTTACTTCGTATTTTCCCTCGTGAGCTTCTTCATCGTATAC CAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGTAATTGA
Protein sequence (LotjaGi5g1v0350100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQI CRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTA EYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDIT HPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEE ALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 388 | 388 | 3.7E-275 | – | |
| CDD | 1 | 279 | 279 | 0.0 | – | |
| Gene3D | 1 | 388 | 388 | 9.4E-169 | – | |
| TIGRFAM | 1 | 386 | 386 | 6.3E-245 | ||
| PANTHER | 1 | 388 | 388 | 3.7E-275 | ||
| SUPERFAMILY | 1 | 283 | 283 | 4.57E-82 | ||
| Pfam | 47 | 277 | 231 | 5.4E-68 | ||
| ProSitePatterns | 268 | 277 | 10 | - | ||
| CDD | 287 | 381 | 95 | 1.5929E-60 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi5g1v0350100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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