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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0352200 |
| Transcript ID | LotjaGi5g1v0352200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G08305.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305; TrEMBL-Plants: tr|K7N2R3|K7N2R3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0352200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66807170..66808816) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGGCGTGTCACCGTCATTTAAAATTGCAAATCTAAACCAAACTCTACTCAGCCTCCTTGATGGATGCAAATCAAT GCTTGAACTGAAGCAACTTCATGCTATTTTGATCACTTCCGGCTTGTCTCAAGATGAGCCATTTATATCCAAAGTTCTTT GTTTTTCTGCTCTGTCCAATTCAGGCGACATTGATTATTCATACAGGGCTTTCTCCCAGCTTTCCAGTCCAAGAATTTTT ATCTGGAATACAATCATAAGAGGCTATTCAAATAGCAAAAATCCAATTCAATCACTATCTATTTTTCTAAAGATGCTGCG ACATGGGCTTGCACCCGATTACTTAACATATCCATTTCTTGCGAAAGCATCAGCACGCCTCTTAAATCAGGAAACCGGTG TATCTGTGCATGCCCACATAATAAAAACTGGGCATGAGTATGATAGATTTATCCAGAATTCGTTGATTCACATGTATGCT TCTTGTGGGAATATTGTCTGGGCTCATAAGGTATTTGACAGTGTGCAGGAAAAAAATCTGGTTTCATGGAATTCCATGTT GGATGGCTATGCTAAGTGTGGAGAAATGGTTTTGGCTCATAAAGTTTTTGAGTCCATGTCAGAGAGGGATGTTCGGTCAT GGAGTTCTCTGATTGATGGTTATGTTAAGGCTGGTGAATACAGGGAAGCTATGGCTGTCTTTGAAAAGATGCGTGCTGTT GGGCCCAAGGCCAATGAAGTAACCATGGTGAGTGTCTTGTGTGCCTGTGCACACCTGGGTGCTCTAGAGAAGGGGAAAAT GATGCACAAGTACATAGTTGACAATGGCTTACCACTGACACTGGTCCTGCAGACTTCACTTGTGGACATGTATGCCAAAT GTGGGGCAATAGAGGAGGCTTTACTTGTATTCCATGGTGTCTCAAAGAGAAAAACTGATGTGTTGATTTGGAATGCAATG ATTGGAGGTCTCGCAACACATGGATCAGTCGAAGAGTCTCTTGGATTGTTTAAGGATATGCAAGCGGTTGGTATCAAAGC CGATGAGGTTACATACTTGTGCTTGTTGGCTGCCTGTGCCCATGGAGGGTTAGTTAAAGAAGCATGGCACTTCTTTGAAA GCCTTGATAAATGTGGCATGACACCTTCAAGTGAGCACTATGCCTGCATGGTAGATGTGCTAGCGCGTGCCGGTCAATTA GCTACTGCATACCAATTTATATGTCAAATGCCAATGGAACCAACAGCTTCCATGTTAGGTGCTCTTCTTAGTGGATGTAT TAACCATAGAAATTTTGAGCTGGCTGAAATAGTTGGAAGGAAGCTTATTGAGCTAGAACCAGATCATGATGGAAGGTATA TTGGCTTGTCAAATGTTTATGCAGGTGTTAAACGCTGGGATGATGCAAGAGGCATGAGAGAAGCCATGGAGCGAAGAGGG GTGAAAAAATCACCTGGGTTTAGTTCTGTTGAAATATGTGGAGTCTCTCGTAGATTCATTGCTCATGATAAAACACACTC TGATTCAGAAGAAACTTATTCTATGCTAAACTTTGTTGCCTATCAAATGAAACTTGGCTGTCGCCAGGACAATGAGGAAA GCTCATTGAATAATGATTCGTTAATAGAAGATTTGCTTCTTGTTTGA
CDS sequence (LotjaGi5g1v0352200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGGCGTGTCACCGTCATTTAAAATTGCAAATCTAAACCAAACTCTACTCAGCCTCCTTGATGGATGCAAATCAAT GCTTGAACTGAAGCAACTTCATGCTATTTTGATCACTTCCGGCTTGTCTCAAGATGAGCCATTTATATCCAAAGTTCTTT GTTTTTCTGCTCTGTCCAATTCAGGCGACATTGATTATTCATACAGGGCTTTCTCCCAGCTTTCCAGTCCAAGAATTTTT ATCTGGAATACAATCATAAGAGGCTATTCAAATAGCAAAAATCCAATTCAATCACTATCTATTTTTCTAAAGATGCTGCG ACATGGGCTTGCACCCGATTACTTAACATATCCATTTCTTGCGAAAGCATCAGCACGCCTCTTAAATCAGGAAACCGGTG TATCTGTGCATGCCCACATAATAAAAACTGGGCATGAGTATGATAGATTTATCCAGAATTCGTTGATTCACATGTATGCT TCTTGTGGGAATATTGTCTGGGCTCATAAGGTATTTGACAGTGTGCAGGAAAAAAATCTGGTTTCATGGAATTCCATGTT GGATGGCTATGCTAAGTGTGGAGAAATGGTTTTGGCTCATAAAGTTTTTGAGTCCATGTCAGAGAGGGATGTTCGGTCAT GGAGTTCTCTGATTGATGGTTATGTTAAGGCTGGTGAATACAGGGAAGCTATGGCTGTCTTTGAAAAGATGCGTGCTGTT GGGCCCAAGGCCAATGAAGTAACCATGGTGAGTGTCTTGTGTGCCTGTGCACACCTGGGTGCTCTAGAGAAGGGGAAAAT GATGCACAAGTACATAGTTGACAATGGCTTACCACTGACACTGGTCCTGCAGACTTCACTTGTGGACATGTATGCCAAAT GTGGGGCAATAGAGGAGGCTTTACTTGTATTCCATGGTGTCTCAAAGAGAAAAACTGATGTGTTGATTTGGAATGCAATG ATTGGAGGTCTCGCAACACATGGATCAGTCGAAGAGTCTCTTGGATTGTTTAAGGATATGCAAGCGGTTGGTATCAAAGC CGATGAGGTTACATACTTGTGCTTGTTGGCTGCCTGTGCCCATGGAGGGTTAGTTAAAGAAGCATGGCACTTCTTTGAAA GCCTTGATAAATGTGGCATGACACCTTCAAGTGAGCACTATGCCTGCATGGTAGATGTGCTAGCGCGTGCCGAAATAGTT GGAAGGAAGCTTATTGAGCTAGAACCAGATCATGATGGAAGGTATATTGGCTTGTCAAATGTTTATGCAGGTGTTAAACG CTGGGATGATGCAAGAGGCATGAGAGAAGCCATGGAGCGAAGAGGGGTGAAAAAATCACCTGGGTTTAGTTCTGTTGAAA TATGTGGAGTCTCTCGTAGATTCATTGCTCATGATAAAACACACTCTGATTCAGAAGAAACTTATTCTATGCTAAACTTT GTTGCCTATCAAATGAAACTTGGCTGTCGCCAGGACAATGAGGAAAGCTCATTGAATAATGATTCGTTAATAGAAGATTT GCTTCTTGTTTGA
Protein sequence (LotjaGi5g1v0352200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGVSPSFKIANLNQTLLSLLDGCKSMLELKQLHAILITSGLSQDEPFISKVLCFSALSNSGDIDYSYRAFSQLSSPRIF IWNTIIRGYSNSKNPIQSLSIFLKMLRHGLAPDYLTYPFLAKASARLLNQETGVSVHAHIIKTGHEYDRFIQNSLIHMYA SCGNIVWAHKVFDSVQEKNLVSWNSMLDGYAKCGEMVLAHKVFESMSERDVRSWSSLIDGYVKAGEYREAMAVFEKMRAV GPKANEVTMVSVLCACAHLGALEKGKMMHKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLVFHGVSKRKTDVLIWNAM IGGLATHGSVEESLGLFKDMQAVGIKADEVTYLCLLAACAHGGLVKEAWHFFESLDKCGMTPSSEHYACMVDVLARAEIV GRKLIELEPDHDGRYIGLSNVYAGVKRWDDARGMREAMERRGVKKSPGFSSVEICGVSRRFIAHDKTHSDSEETYSMLNF VAYQMKLGCRQDNEESSLNNDSLIEDLLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 129 | 119 | 2.4E-9 | ||
| SUPERFAMILY | 65 | 248 | 184 | 3.64E-5 | ||
| ProSiteProfiles | 78 | 112 | 35 | 10.304 | ||
| Pfam | 81 | 110 | 30 | 9.9E-5 | ||
| TIGRFAM | 81 | 113 | 33 | 3.3E-5 | ||
| Gene3D | 130 | 209 | 80 | 2.2E-16 | ||
| PANTHER | 132 | 206 | 75 | 2.9E-81 | – | |
| ProSiteProfiles | 148 | 178 | 31 | 7.213 | ||
| Pfam | 153 | 179 | 27 | 0.038 | ||
| ProSiteProfiles | 179 | 209 | 31 | 10.567 | ||
| TIGRFAM | 181 | 211 | 31 | 2.2E-7 | ||
| PANTHER | 187 | 268 | 82 | 2.9E-81 | – | |
| ProSiteProfiles | 210 | 244 | 35 | 12.025 | ||
| Gene3D | 210 | 311 | 102 | 4.2E-22 | ||
| Pfam | 210 | 257 | 48 | 3.3E-8 | ||
| SUPERFAMILY | 211 | 434 | 224 | 1.17E-7 | ||
| TIGRFAM | 213 | 241 | 29 | 1.1E-7 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.487 | ||
| PANTHER | 265 | 438 | 174 | 2.9E-81 | – | |
| ProSiteProfiles | 280 | 310 | 31 | 6.807 | ||
| Pfam | 285 | 305 | 21 | 0.22 | ||
| Gene3D | 312 | 479 | 168 | 2.4E-23 | ||
| Pfam | 313 | 360 | 48 | 1.9E-10 | ||
| ProSiteProfiles | 313 | 347 | 35 | 10.885 | ||
| TIGRFAM | 316 | 349 | 34 | 3.2E-6 | ||
| ProSiteProfiles | 348 | 382 | 35 | 10.687 | ||
| TIGRFAM | 350 | 383 | 34 | 1.9E-4 | ||
| ProSiteProfiles | 411 | 445 | 35 | 6.555 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0352200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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