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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0363500 |
Transcript ID | LotjaGi5g1v0363500.2 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transporter; TAIR: AT2G35740.1 nositol transporter 3; Swiss-Prot: sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3; TrEMBL-Plants: tr|A0A061EPP2|A0A061EPP2_THECC Inositol transporter 1 isoform 2; Found in the gene: LotjaGi5g1v0363500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67833593..67837522) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAATTCTTGTGAAATGAAACAATAGCATTTAATATGTAGAGTTGAAAGGAAATAGCAAAAAAAGATAAGAGCGAGTC ATGTGGTGGTGGTGGAGCTATCTGCCGAGTCAGACGATAAGCACATTTGCAGCTTATGATCCAAATAATGAATAATTGAA TTGAATCTGATCCATCCATGTAAGCTAAAGCAGAACAAGCTAATAGTAGTTAATTTCCTTTCCTAAGTAAGCAAGTTGCA GTGGCCAGTTGGGATCACCACACAACAGAACAGTTGACCCTCCTGCTCTGTTATTGTTGTTCTTTCTGTTTCTGCTGCTT AATTAATTCATCATTCAACATATTCACCATGACGATTAGTACTACTACTACTACTACTGTACCGTCGTCCATGCCAGGAA GCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTTCAAGAATCCTTACATTTTGGGCCTCACTGCTGTC GCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCTCGGGAGCCCTTCTCTATATCAAAGATGATTTTCA GGAGGTCAGAGACAGTTATTTTCTACAGGTACGTTCAATACTTTTCCCCCTCTTTCAATCTTAACAATGTACTTTACTTT ATTTTAATCAGTGTATTCAATTCAAAGGAACTAGTTTTCATATTTGATATGGTCACGGTCACACTCACACACAACCTAAC CTCACTACAAAATGGAATTTGTTGTGGAGAAGTAGCTAGGGTGATCTCACTATAATTTTTTTCTCACTGGATTTTCTAAT TGTTTAAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAA TGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTGCACTGGGAGCAATTGTCATGGCTGCTGCAC CAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTGGTATAGCTTCTGTTACTGCTCCTGTGTAT ATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAATGTGCTTATGATCACTGGAGGACAGTTTCT TTCCTATCTCATAAATCTTGCTTTTACACAGGTCAATTTTCCATATTTGTTTTTATATTAAATAGAGCATTGTTTTGTAT CACGTTAAATAAGTTGCTGAACACTAAGGCTGCATTTGGGGTTAACAACTTAATTAAGTGCTTATTTATAAGTTTATTTG AAAAACTAGTTGAAATATGCTCAGAATAGTTTATTGGTAGATATAAACGTTTACTCATTAGCGGATTCGAGCAGCTTACG AAAATAGGTCCAAAACAGCTTATAGGTAGGTCATAAGTTATTTTCGTAAGCTTATCCCAACACTTGCATAAGTGTTTATG ATGTAAGATAAACTTAAATTAGTTATTTCAAACGCAGACTAATTATGTCTTGTTTCCTAAATTATATAGACCTCTTATTT GAAATGGTAAAGTTCAGTTTCTCTCATGTGGTTTGGCATGTTATCCTTGTTCCACCTTGTGACGTGAACTTTATACCACA CTTCCTTTCACTTTCTCTATTCTCACATATCTAGTGTTTCTTTTTCTCGCCCCCTCATGATTTGGCATGTTTTCATTAAT CTGCCTAGCAATGTGAACTTTATTACTCTTCATTTCACTTTGCTTCAATTTCACATAACAGTTGTCTCTTTTTCCTGCCT CCATCCATTTTCTAATGGAATCAATAGATGAACATCTCTTGCAATCTAACTTACTGAAAAAAGGGCAAAGAAATACATAG TTAAATATGGGATTATGCTACCTTTTCAAGGTCAAGGGTGTTATTCCGCTGACCCCTCACATTCTTAATCAAGCAGGTCC CCGGAACATGGCGATGGATGCTGGGAGTTTCAGGTTTGCCTGCAGTAGTTCAGTTTTTCCTCATGCTCTTACTGCCTGAA TCCCCCAGATGGCTCTTTATAAAGGTCACAGAATTTTCATAAGCTTACCTTCAAAGTCTATTTTCTTTAATATAATTTTT TCCTACTTGTTCAGAATAGGGAAGATGAAGCTATTGCCGTGCTTACTAGGATCTATGACTTTGATCGTTTAGAGGATGAA GTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAAAAAGGGATGATATCAGATATTTGGATGTTTTTAAATCAAA AGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAGGTAAGAAAAAGTTCACTTGGGATATCATTGTTGGGAAAAT AACTTCTCTCTTGCTATTAAAGGATTGATTTGCATAAATATTCTTTTCGTAAACAAGCCATGGTGGCACTGCAAAACTGG ATTTCACAACATTACCCTAAAAAACAACTTTTTCATCAATGTATCAGACATAAATAACTTCACTTTCGCCATAATCAATT TTGCCAAAACCAATTTTATCCAAAATCAATTGTGACAAATGATCAAACATGTAAGAAATGTGTTACTTATAGCATCCCAT TTTGTCTGTGAAGGCTTTTCAGCAATTCACAGGTATAAACACAGTGATGTACTACAGCCCCACCATTGTCCAAATGGCTG GCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGCCGGCATGAATGCCACCGGAACAATTCTCGGCATA TACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCTTAGGAGGAGTAATAGCATCTCTGATCATCCTCTC CTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGGTTTGCAGTTTTAGGTTTGGCCCTATATATCTCGT TCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGAGATATATCCTCAAAAATACAGAGGAATGTGTGGA GGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTCAGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGC TGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTTCTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAG GTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTGGGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAG TCCTAGGAATATATCCAAACCTTAAATACAGTGCACTGTATATGTATGTTGTTAATTATGCTGTGATTGATTGTTGATGA GAGGTAAGCACAGTTAAGAAAGCACAAGAGTGAGAGAGTGACCACCATAAATCCAAAACACACACTATTTTTTGTTTTAC AAATGATCTTTTGGGCACTTAGCTTGAAGTTGGAGACAAGAAGTTGGCATTCAAACTTTTGCTTGTGTTGCAAGTTTGCA ACATGAACATTCTATTTTTATAGTTGATTCATATTTTTTTTTTCTTCCAATTCCAACATAAGTGAAAAAGGGTTCTTTAC AGTTTACACAATTTCTTCAGAATCTGTGAAGTTATTTCATTTCATCCATTTTGTTATGTGTATGACAGGTTCCTTTTGTA AGCATGACTCAGAAAGCTTAATTGACTAATGGAATTCTTAACTAAATTTAAAACTCGTTGTAATCTATATTCATGATGGG GATAGAAACACGTGTTCCTCTTCCTATGGTGTGAATAGATTTGGTTTCGTCAAACTCGTGCTGATACTGTATTATAATCC AATTCCATCAAAATACAGGGAACTTTATTTTCATTAATCTTTTGAGATAAACATCTGAGTAGATAAATCTTTAGATGCGT GATGCAATTTGATGTGAAAGAAAACTACGGATTATTTTCATTAAATAAAAAAAGGAGATAAACATTTGAGCAGATAAATC TTTATTTTCC
CDS sequence (LotjaGi5g1v0363500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGGCTGGTGCAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAGAAAGAAGGCAACCAT CATTGCAGATGTTATCTTTGCACTGGGAGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTCTCATAGTTGGCCGTC TTTTGGTTGGTTTCGGTGTTGGTATAGCTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCACCATCAGAAATAAGG GGGAGCTTAGTAAGCACTAATGTGCTTATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAATCTTGCTTTTACACA GGTCAATTTTCCATATTTGTTTTTATATTAA
Protein sequence (LotjaGi5g1v0363500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAGAIVGAAAGGWINDAYGRKKATIIADVIFALGAIVMAAAPDPYILIVGRLLVGFGVGIASVTAPVYIAELSPSEIR GSLVSTNVLMITGGQFLSYLINLAFTQVNFPYLFLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 109 | 109 | 2.8E-63 | – | |
ProSiteProfiles | 1 | 116 | 116 | 26.286 | ||
Phobius | 1 | 24 | 24 | - | – | |
PANTHER | 1 | 109 | 109 | 2.8E-63 | – | |
Gene3D | 1 | 116 | 116 | 8.1E-31 | – | |
Pfam | 2 | 107 | 106 | 9.9E-33 | ||
SUPERFAMILY | 3 | 115 | 113 | 9.42E-23 | ||
CDD | 15 | 109 | 95 | 1.09101E-41 | – | |
Phobius | 25 | 44 | 20 | - | – | |
TMHMM | 25 | 44 | 20 | - | – | |
Phobius | 45 | 49 | 5 | - | – | |
TMHMM | 49 | 71 | 23 | - | – | |
Phobius | 50 | 71 | 22 | - | – | |
ProSitePatterns | 55 | 80 | 26 | - | ||
Phobius | 72 | 82 | 11 | - | – | |
Phobius | 83 | 105 | 23 | - | – | |
TMHMM | 83 | 105 | 23 | - | – | |
Phobius | 106 | 116 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0363500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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