Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0363500 |
| Transcript ID | LotjaGi5g1v0363500.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|A0A0D2UTA0|A0A0D2UTA0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi5g1v0363500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67833658..67837471) extracted from Lotus japonicus Gifu genome v1.2.
GAAATAGCAAAAAAAGATAAGAGCGAGTCATGTGGTGGTGGTGGAGCTATCTGCCGAGTCAGACGATAAGCACATTTGCA GCTTATGATCCAAATAATGAATAATTGAATTGAATCTGATCCATCCATGTAAGCTAAAGCAGAACAAGCTAATAGTAGTT AATTTCCTTTCCTAAGTAAGCAAGTTGCAGTGGCCAGTTGGGATCACCACACAACAGAACAGTTGACCCTCCTGCTCTGT TATTGTTGTTCTTTCTGTTTCTGCTGCTTAATTAATTCATCATTCAACATATTCACCATGACGATTAGTACTACTACTAC TACTACTGTACCGTCGTCCATGCCAGGAAGCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTTCAAGA ATCCTTACATTTTGGGCCTCACTGCTGTCGCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCTCGGGA GCCCTTCTCTATATCAAAGATGATTTTCAGGAGGTCAGAGACAGTTATTTTCTACAGGTACGTTCAATACTTTTCCCCCT CTTTCAATCTTAACAATGTACTTTACTTTATTTTAATCAGTGTATTCAATTCAAAGGAACTAGTTTTCATATTTGATATG GTCACGGTCACACTCACACACAACCTAACCTCACTACAAAATGGAATTTGTTGTGGAGAAGTAGCTAGGGTGATCTCACT ATAATTTTTTTCTCACTGGATTTTCTAATTGTTTAAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATT GTTGGGGCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTGC ACTGGGAGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTG GTATAGCTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAAT GTGCTTATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAATCTTGCTTTTACACAGGTCAATTTTCCATATTTGTT TTTATATTAAATAGAGCATTGTTTTGTATCACGTTAAATAAGTTGCTGAACACTAAGGCTGCATTTGGGGTTAACAACTT AATTAAGTGCTTATTTATAAGTTTATTTGAAAAACTAGTTGAAATATGCTCAGAATAGTTTATTGGTAGATATAAACGTT TACTCATTAGCGGATTCGAGCAGCTTACGAAAATAGGTCCAAAACAGCTTATAGGTAGGTCATAAGTTATTTTCGTAAGC TTATCCCAACACTTGCATAAGTGTTTATGATGTAAGATAAACTTAAATTAGTTATTTCAAACGCAGACTAATTATGTCTT GTTTCCTAAATTATATAGACCTCTTATTTGAAATGGTAAAGTTCAGTTTCTCTCATGTGGTTTGGCATGTTATCCTTGTT CCACCTTGTGACGTGAACTTTATACCACACTTCCTTTCACTTTCTCTATTCTCACATATCTAGTGTTTCTTTTTCTCGCC CCCTCATGATTTGGCATGTTTTCATTAATCTGCCTAGCAATGTGAACTTTATTACTCTTCATTTCACTTTGCTTCAATTT CACATAACAGTTGTCTCTTTTTCCTGCCTCCATCCATTTTCTAATGGAATCAATAGATGAACATCTCTTGCAATCTAACT TACTGAAAAAAGGGCAAAGAAATACATAGTTAAATATGGGATTATGCTACCTTTTCAAGGTCAAGGGTGTTATTCCGCTG ACCCCTCACATTCTTAATCAAGCAGGTCCCCGGAACATGGCGATGGATGCTGGGAGTTTCAGGTTTGCCTGCAGTAGTTC AGTTTTTCCTCATGCTCTTACTGCCTGAATCCCCCAGATGGCTCTTTATAAAGGTCACAGAATTTTCATAAGCTTACCTT CAAAGTCTATTTTCTTTAATATAATTTTTTCCTACTTGTTCAGAATAGGGAAGATGAAGCTATTGCCGTGCTTACTAGGA TCTATGACTTTGATCGTTTAGAGGATGAAGTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAAAAAGGGATGAT ATCAGATATTTGGATGTTTTTAAATCAAAAGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAGGTAAGAAAAAG TTCACTTGGGATATCATTGTTGGGAAAATAACTTCTCTCTTGCTATTAAAGGATTGATTTGCATAAATATTCTTTTCGTA AACAAGCCATGGTGGCACTGCAAAACTGGATTTCACAACATTACCCTAAAAAACAACTTTTTCATCAATGTATCAGACAT AAATAACTTCACTTTCGCCATAATCAATTTTGCCAAAACCAATTTTATCCAAAATCAATTGTGACAAATGATCAAACATG TAAGAAATGTGTTACTTATAGCATCCCATTTTGTCTGTGAAGGCTTTTCAGCAATTCACAGGTATAAACACAGTGATGTA CTACAGCCCCACCATTGTCCAAATGGCTGGCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGCCGGCA TGAATGCCACCGGAACAATTCTCGGCATATACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCTTAGGA GGAGTAATAGCATCTCTGATCATCCTCTCCTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGGTTTGC AGTTTTAGGTTTGGCCCTATATATCTCGTTCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGAGATAT ATCCTCAAAAATACAGAGGAATGTGTGGAGGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTCAGTCG TTTCTGTCACTTGCTGGTGCTGCAGGGGCTGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTTCTTTT TGTGGTTTTGTATGTTCCTGAGACCAAAGGTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTGGGGCA AGAATCCTGAAACTCTAAGCCTTCTTCAGTCCTAGGAATATATCCAAACCTTAAATACAGTGCACTGTATATGTATGTTG TTAATTATGCTGTGATTGATTGTTGATGAGAGGTAAGCACAGTTAAGAAAGCACAAGAGTGAGAGAGTGACCACCATAAA TCCAAAACACACACTATTTTTTGTTTTACAAATGATCTTTTGGGCACTTAGCTTGAAGTTGGAGACAAGAAGTTGGCATT CAAACTTTTGCTTGTGTTGCAAGTTTGCAACATGAACATTCTATTTTTATAGTTGATTCATATTTTTTTTTTCTTCCAAT TCCAACATAAGTGAAAAAGGGTTCTTTACAGTTTACACAATTTCTTCAGAATCTGTGAAGTTATTTCATTTCATCCATTT TGTTATGTGTATGACAGGTTCCTTTTGTAAGCATGACTCAGAAAGCTTAATTGACTAATGGAATTCTTAACTAAATTTAA AACTCGTTGTAATCTATATTCATGATGGGGATAGAAACACGTGTTCCTCTTCCTATGGTGTGAATAGATTTGGTTTCGTC AAACTCGTGCTGATACTGTATTATAATCCAATTCCATCAAAATACAGGGAACTTTATTTTCATTAATCTTTTGAGATAAA CATCTGAGTAGATAAATCTTTAGATGCGTGATGCAATTTGATGTGAAAGAAAAC
CDS sequence (LotjaGi5g1v0363500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTCAGGAGGTCAGAGACAGTTATTTTCTACAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAAT TGTTGGGGCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTG CACTGGGAGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTT GGTATAGCTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAA TGTGCTTATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAATCTTGCTTTTACACAGGTCCCCGGAACATGGCGAT GGATGCTGGGAGTTTCAGGTTTGCCTGCAGTAGTTCAGTTTTTCCTCATGCTCTTACTGCCTGAATCCCCCAGATGGCTC TTTATAAAGGTCACAGAATTTTCATAA
Protein sequence (LotjaGi5g1v0363500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFRRSETVIFYSWQETIVSMAVAGAIVGAAAGGWINDAYGRKKATIIADVIFALGAIVMAAAPDPYILIVGRLLVGFGV GIASVTAPVYIAELSPSEIRGSLVSTNVLMITGGQFLSYLINLAFTQVPGTWRWMLGVSGLPAVVQFFLMLLLPESPRWL FIKVTEFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| ProSiteProfiles | 1 | 168 | 168 | 33.199 | ||
| Gene3D | 4 | 166 | 163 | 1.4E-47 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| CDD | 14 | 159 | 146 | 2.18364E-67 | – | |
| Pfam | 14 | 163 | 150 | 4.9E-49 | ||
| SUPERFAMILY | 15 | 159 | 145 | 6.54E-33 | ||
| PANTHER | 15 | 164 | 150 | 4.7E-93 | – | |
| PANTHER | 15 | 164 | 150 | 4.7E-93 | – | |
| Phobius | 36 | 46 | 11 | - | – | |
| TMHMM | 45 | 62 | 18 | - | – | |
| Phobius | 47 | 64 | 18 | - | – | |
| Phobius | 65 | 69 | 5 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 70 | 91 | 22 | - | – | |
| ProSitePatterns | 75 | 100 | 26 | - | ||
| Phobius | 92 | 102 | 11 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 131 | 153 | 23 | - | – | |
| Phobius | 154 | 168 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0363500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…