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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0363500 |
| Transcript ID | LotjaGi5g1v0363500.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|I1NJB7|I1NJB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0363500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67834226..67837156) extracted from Lotus japonicus Gifu genome v1.2.
ACTACTACTACTGTACCGTCGTCCATGCCAGGAAGCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTT CAAGAATCCTTACATTTTGGGCCTCACTGCTGTCGCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCT CGGGAGCCCTTCTCTATATCAAAGATGATTTTCAGGAGGTCAGAGACAGTTATTTTCTACAGGTACGTTCAATACTTTTC CCCCTCTTTCAATCTTAACAATGTACTTTACTTTATTTTAATCAGTGTATTCAATTCAAAGGAACTAGTTTTCATATTTG ATATGGTCACGGTCACACTCACACACAACCTAACCTCACTACAAAATGGAATTTGTTGTGGAGAAGTAGCTAGGGTGATC TCACTATAATTTTTTTCTCACTGGATTTTCTAATTGTTTAAGTTGGCAGGAAACAATTGTCAGCATGGCAGTGGCTGGTG CAATTGTTGGGGCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATC TTTGCACTGGGAGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGG TGTTGGTATAGCTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCA CTAATGTGCTTATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAATCTTGCTTTTACACAGGTCAATTTTCCATAT TTGTTTTTATATTAAATAGAGCATTGTTTTGTATCACGTTAAATAAGTTGCTGAACACTAAGGCTGCATTTGGGGTTAAC AACTTAATTAAGTGCTTATTTATAAGTTTATTTGAAAAACTAGTTGAAATATGCTCAGAATAGTTTATTGGTAGATATAA ACGTTTACTCATTAGCGGATTCGAGCAGCTTACGAAAATAGGTCCAAAACAGCTTATAGGTAGGTCATAAGTTATTTTCG TAAGCTTATCCCAACACTTGCATAAGTGTTTATGATGTAAGATAAACTTAAATTAGTTATTTCAAACGCAGACTAATTAT GTCTTGTTTCCTAAATTATATAGACCTCTTATTTGAAATGGTAAAGTTCAGTTTCTCTCATGTGGTTTGGCATGTTATCC TTGTTCCACCTTGTGACGTGAACTTTATACCACACTTCCTTTCACTTTCTCTATTCTCACATATCTAGTGTTTCTTTTTC TCGCCCCCTCATGATTTGGCATGTTTTCATTAATCTGCCTAGCAATGTGAACTTTATTACTCTTCATTTCACTTTGCTTC AATTTCACATAACAGTTGTCTCTTTTTCCTGCCTCCATCCATTTTCTAATGGAATCAATAGATGAACATCTCTTGCAATC TAACTTACTGAAAAAAGGGCAAAGAAATACATAGTTAAATATGGGATTATGCTACCTTTTCAAGGTCAAGGGTGTTATTC CGCTGACCCCTCACATTCTTAATCAAGCAGGTCCCCGGAACATGGCGATGGATGCTGGGAGTTTCAGGTTTGCCTGCAGT AGTTCAGTTTTTCCTCATGCTCTTACTGCCTGAATCCCCCAGATGGCTCTTTATAAAGGTCACAGAATTTTCATAAGCTT ACCTTCAAAGTCTATTTTCTTTAATATAATTTTTTCCTACTTGTTCAGAATAGGGAAGATGAAGCTATTGCCGTGCTTAC TAGGATCTATGACTTTGATCGTTTAGAGGATGAAGTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAAAAAGGG ATGATATCAGATATTTGGATGTTTTTAAATCAAAAGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAGGTAAGA AAAAGTTCACTTGGGATATCATTGTTGGGAAAATAACTTCTCTCTTGCTATTAAAGGATTGATTTGCATAAATATTCTTT TCGTAAACAAGCCATGGTGGCACTGCAAAACTGGATTTCACAACATTACCCTAAAAAACAACTTTTTCATCAATGTATCA GACATAAATAACTTCACTTTCGCCATAATCAATTTTGCCAAAACCAATTTTATCCAAAATCAATTGTGACAAATGATCAA ACATGTAAGAAATGTGTTACTTATAGCATCCCATTTTGTCTGTGAAGGCTTTTCAGCAATTCACAGGTATAAACACAGTG ATGTACTACAGCCCCACCATTGTCCAAATGGCTGGCTTCCACTCTAATGAGTTGGCTCTTCTCCTCTCTCTCATAATTGC CGGCATGAATGCCACCGGAACAATTCTCGGCATATACCTTATTGACCATGCAGGGAGGAAGAAACTAGCTCTATATAGCT TAGGAGGAGTAATAGCATCTCTGATCATCCTCTCCTTTTCATTCTTTAACCAATCATCTGCAAATGGTTTGTATGGATGG TTTGCAGTTTTAGGTTTGGCCCTATATATCTCGTTCTTCTCACCGGGGATGGGGACAGTGCCATGGACAGTAAACTCAGA GATATATCCTCAAAAATACAGAGGAATGTGTGGAGGCATGTCAGCTACTGTGAATTGGGTTTCAAACTTGATTGTGGCTC AGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGCTGGTTTTACTTTCTTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTT CTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAGGTTTGACATTTGATGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTG GGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAGTCCTAGGAATATATCCAAACCTTAAATACAGTGCACTGTATATGTA TGTTGTTAATTATGCTGTGATTGATTGTTGATGAGAGGTAAGCACAGTTAA
CDS sequence (LotjaGi5g1v0363500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGAAGCTCAGGGTATTTGGAGATGTACCCTCAGAGGAAAATTTCCCTCTTCAAGAATCCTTACATTTTGGGCCT CACTGCTGTCGCTAGCATTGGTGGACTCCTCTTTGGCTACGACACAGGTGTTATCTCGGGAGCCCTTCTCTATATCAAAG ATGATTTTCAGGAGGTCAGAGACAGTTATTTTCTACAGGAAACAATTGTCAGCATGGCAGTGGCTGGTGCAATTGTTGGG GCAGCAGCAGGTGGTTGGATAAATGATGCTTATGGAAGAAAGAAGGCAACCATCATTGCAGATGTTATCTTTGCACTGGG AGCAATTGTCATGGCTGCTGCACCAGATCCTTATATTCTCATAGTTGGCCGTCTTTTGGTTGGTTTCGGTGTTGGTATAG CTTCTGTTACTGCTCCTGTGTATATTGCAGAGCTGTCACCATCAGAAATAAGGGGGAGCTTAGTAAGCACTAATGTGCTT ATGATCACTGGAGGACAGTTTCTTTCCTATCTCATAAATCTTGCTTTTACACAGAATAGGGAAGATGAAGCTATTGCCGT GCTTACTAGGATCTATGACTTTGATCGTTTAGAGGATGAAGTTTCCTCAATTACAACTCAGTTAGAGCAAGACCCCCAAA AAAGGGATGATATCAGATATTTGGATGTTTTTAAATCAAAAGAAATCAGGCTTGCATTCCTTGCTGGAGGTGGATTGCAG GCTTTTCAGCAATTCACAGGTATAAACACAGTGATGTACTACAGCCCCACCATTGTCCAAATGGCTGGCTTCCACTCTAA TGAGTTGGCTCTTCTCCTCTCTCTCATAATTGCCGGCATGAATGCCACCGGAACAATTCTCGGCATATACCTTATTGACC ATGCAGGGAGGAAGAAACTAGCTCTATATAGCTTAGGAGGAGTAATAGCATCTCTGATCATCCTCTCCTTTTCATTCTTT AACCAATCATCTGCAAATGGTTTGTATGGATGGTTTGCAGTTTTAGGTTTGGCCCTATATATCTCGTTCTTCTCACCGGG GATGGGGACAGTGCCATGGACAGTAAACTCAGAGATATATCCTCAAAAATACAGAGGAATGTGTGGAGGCATGTCAGCTA CTGTGAATTGGGTTTCAAACTTGATTGTGGCTCAGTCGTTTCTGTCACTTGCTGGTGCTGCAGGGGCTGGTTTTACTTTC TTGCTTCTTGCTGTTATAGCTGTGCTTGCCTTTCTTTTTGTGGTTTTGTATGTTCCTGAGACCAAAGGTTTGACATTTGA TGAAGTGGAGCTGTTATGGAAGGAGAGAGCTTGGGGCAAGAATCCTGAAACTCTAAGCCTTCTTCAAGGTAAGCACAGTT AA
Protein sequence (LotjaGi5g1v0363500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGSSGYLEMYPQRKISLFKNPYILGLTAVASIGGLLFGYDTGVISGALLYIKDDFQEVRDSYFLQETIVSMAVAGAIVG AAAGGWINDAYGRKKATIIADVIFALGAIVMAAAPDPYILIVGRLLVGFGVGIASVTAPVYIAELSPSEIRGSLVSTNVL MITGGQFLSYLINLAFTQNREDEAIAVLTRIYDFDRLEDEVSSITTQLEQDPQKRDDIRYLDVFKSKEIRLAFLAGGGLQ AFQQFTGINTVMYYSPTIVQMAGFHSNELALLLSLIIAGMNATGTILGIYLIDHAGRKKLALYSLGGVIASLIILSFSFF NQSSANGLYGWFAVLGLALYISFFSPGMGTVPWTVNSEIYPQKYRGMCGGMSATVNWVSNLIVAQSFLSLAGAAGAGFTF LLLAVIAVLAFLFVVLYVPETKGLTFDEVELLWKERAWGKNPETLSLLQGKHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 2 | 178 | 177 | 9.1E-223 | – | |
| PANTHER | 2 | 178 | 177 | 9.1E-223 | – | |
| Gene3D | 17 | 178 | 162 | 2.0E-43 | – | |
| SUPERFAMILY | 21 | 430 | 410 | 6.67E-59 | ||
| Phobius | 23 | 52 | 30 | - | – | |
| ProSiteProfiles | 27 | 422 | 396 | 42.174 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| CDD | 30 | 420 | 391 | 5.71083E-147 | – | |
| Pfam | 32 | 177 | 146 | 1.3E-16 | ||
| PRINTS | 35 | 45 | 11 | 1.9E-27 | ||
| Phobius | 53 | 63 | 11 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 64 | 86 | 23 | - | – | |
| Phobius | 87 | 97 | 11 | - | – | |
| TMHMM | 96 | 113 | 18 | - | – | |
| Phobius | 98 | 115 | 18 | - | – | |
| Phobius | 116 | 120 | 5 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| PRINTS | 121 | 140 | 20 | 1.9E-27 | ||
| Phobius | 121 | 142 | 22 | - | – | |
| ProSitePatterns | 126 | 151 | 26 | - | ||
| Phobius | 143 | 153 | 11 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 154 | 172 | 19 | - | – | |
| Phobius | 173 | 268 | 96 | - | – | |
| PANTHER | 176 | 449 | 274 | 9.1E-223 | – | |
| PANTHER | 176 | 449 | 274 | 9.1E-223 | – | |
| Pfam | 178 | 433 | 256 | 1.6E-56 | ||
| Gene3D | 179 | 437 | 259 | 4.1E-68 | – | |
| PRINTS | 243 | 253 | 11 | 1.9E-27 | ||
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 269 | 293 | 25 | - | – | |
| ProSitePatterns | 288 | 304 | 17 | - | ||
| Phobius | 294 | 299 | 6 | - | – | |
| Phobius | 300 | 320 | 21 | - | – | |
| TMHMM | 301 | 320 | 20 | - | – | |
| Phobius | 321 | 331 | 11 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 332 | 355 | 24 | - | – | |
| PRINTS | 334 | 355 | 22 | 1.9E-27 | ||
| Phobius | 356 | 366 | 11 | - | – | |
| PRINTS | 357 | 369 | 13 | 1.9E-27 | ||
| Phobius | 367 | 388 | 22 | - | – | |
| Phobius | 389 | 393 | 5 | - | – | |
| Phobius | 394 | 418 | 25 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 419 | 453 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0363500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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