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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0001000 |
| Transcript ID | LotjaGi6g1v0001000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G23020.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020; TrEMBL-Plants: tr|A0A1J7HAK0|A0A1J7HAK0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0001000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:395765..400747) extracted from Lotus japonicus Gifu genome v1.2.
CCCCCCCCAAAAAACTCTCTAGTCTCTATGTAAGAAGATGCCCAATCCTCCCTACAATACAAAGTACAAAAACTGGATAA AATGAGAAGAAAATGAGACTCTGTCAAATCCGATACGATAAGAAAAAAGAGTAGTAGAGAGTGAAGCTGTCGTTGTTAGT TGTTATCGTTCTTCCTGTTTTGTTTGTGTTGATAATTCTTCGGAACCCCAAATGCTTCTGAGGCTTCAACTTTTAGAATC CGCTACTCTTCCACTTGAAAACTCTGTATCCATTCCCATCCCCAAACATCACGCACTGCCCCATTCTCCCAATGGCATAC ACCAAGAATTTCGACTAAAGAAACTGAATCTGGAGAAAAATGTTGACTCTGGGATTCCACAGAAAAGGGGTGATAATGGG TCTGTTCTGAAGCAGCGCAAGGTGCACTCCAGATGTTCGAAGAAATGCTCATCTTACAGTGGATGTATTCCTGCAGTTCT ACAAGCTTTGAATACCATTCAGGATTTGGATGAGGCGCTCAGACCATGGGAGGAGAGTTTCTCCAACAAGGAAATGAGTA TTATTTTGAAGGAACAGGTTTCTTGGCAGAGGGCATTGCAGATTTTCGAGTGGTTCAAGAAGAAAGGTTGTTATGACTTG AACGTGATTCATTATAATATAATGCTTTGGATACTCGGCAAAGCCCGAAAGTGGAGCCTTGTGGAGAGTTTGTGGAATGA AATGAATTTCAAAGGGGTTGCGCCTGTCAATTCCACATATGGAACCTTGATTGATGTTTTCAGCAAAGGTGGACTTAAAA AAGAAGCACTTGCTTGGCTTCAAAGGATGCAAAGTCAAGGGATGGAACCTGATGAGGTCACAATGGGGATTGTCGTTCAA TTGCACAAGAGGGCCGGAGAGTTCCAAAAAGCTGAAGAGTTTTTCAGGAAATGGTCAAATGGTGAACCTTTAAGATTAGG GATTAATCATGATAAGGTGGACACTGCACATCTGAACAATGAGGGATCACATATCAACGTTTGTTTAAGCTCACGGACAT ATAATACCTTGATTGACACATATGGAAAGGCTGGTCAACTTCGAGCAGCATCTGTAACTTTTGCTAACATGATCAAACAA GGGATACCCCTGACCACAGTGACACTCAATACAATGATTCACTTGTACGGAAACCATGGACGTCTACGGGAAGTTAGTTT GCTGTTGCAGAGAATGGAAGAGCTTCAATGCCCACCTGACACACGGACATATAATATCCTCATTTCTCTTTATGTCAAAC ATAATAATATCAACATGGCAGCAAAATATCTTGCAAAGATGAAAGAGGCCTGCCTTGAACCTGACCATGTGAGTTACCGT ACCCTCTTGTATGCATACTCAACTAGGAAAATGGTCAAAGAAGCTGAAGAACTCGTACAGGAGATGGATGAAAGGGGTCT TGAGATTGATGAATTAACTCAATCTGCTTTGACTAGGATGTATGTAGAGTCAGGTATGCTTGAGCAGTCATGGTTATGGT TCAGAAGGTTCTACCTAGCTGGGAGTATGACTTCTGAATGTTATTCCGCCATTATTGATGCATATGGCAAACAAGGTTAC ACTTTAGAAGCAGAGAAAGTCTTTTTGTGCTGCAAAGAAAGGAAGAAGCTCAGCGTCCTTGAGGTTAATGTGATGATTAA AGCTTATGGAATAGGGAAATTCTATGATAAAGCATGTCTATTATTTGATTCTATGGAGGAATTTGGTGTTGTTGCAGACA AATGTACCTTCAGTTCTCTCATACATATTTTGGCCAGTGCTGACAAGCCAAACATTGCAAAACTTTATGTGAAAAAAATG CAGGAGACAGGATTGGTGAGTGATTGCATCCCATATTGTGCAGTGATAACAAGCTTTGCAAAGTTTGGACAATTGGAAAT GGCAGAAGAATTATACAAGGAGATGATTGGATATGGTGTGCAGCCTGATGCCATTATTTTTGGTGTATTAATCAATGCTT TTGCTGATGCGGGAAGTGTTAAAGAAGCCATCAGCTATGTTGATGAAATGAGAAAGGCAGGCTTGCCAGGGAATCCAGCT ATATGTAACTCTTTGATAAAGTTGTATACTAAAGTAGGCTACCTGAAAGAAGCACAAGAAACATACAAGTTGCTTCAATC ATCACAACAAGGCCCTTCTGTATTTTCTTCAAATTGTATGATTGATCTTTATACTGAGCGAGTTATGGTTGAACAAGCAA ATGAGATATTTGAGATCTTGAGGGAGAATGAAGTTGCCAATGAGTTTTCTTTTGTGATGATGTTATGCATGTATAAGAAA ATTGGTAGACTGGATGAAGCCATTCAAATTGCAAATCAGATGAGGAAACTAGGACTCTTGACTGATCTATTGAGTTATAA TAATGTGCTTGGCTTGTATTCTATGCGCAAGAGGCTAAGGGAAGCTAAAGAGACATTCAAAAAAATGATAGAATCTGGCA TTGAACCTGATGATTTTACTTTCAGAGCTCTTGGACATCTTTTGCTGAATTGTGGTGTTTCAAAGCAGGCTGTTGGCAGG CTAGAAGTAATGGTGAAGAGGGATGCTCCTCGTGGCTTGCAATCGTGGCTGCTGACACTTTCATGTGTGCTTGAAGGGGA TGGTTATAGCTGTACAAATGAATAGAAGTGGTTATTTATGGATGGAGCCTACCTATTCTGGCCTTCCTCCGTGGCTGATT TTATGCTTCTTTACTAGCTTAAAGGCTGAGGCTATAATTGGAACCATTCAATCATGGCATCTGGAATAACTACTGGTAAT TTCTATAATAATATGTTATTTTCTGGCTGGGTAGTTTGGATTGTTGTCCATAAAATGAGGCAAAATATTAGGATATTCAT AATTTGATATTAATTTCATATTTTTCTACAGGTACTGAACATTGCACTTTATTTCTCAAATATTATTTTTTCCACCATAA TTTCCACATTTGAATTTTCCTACTTATGACCACAAGTATCTTCTGACTGCTGTTTTGCAGGATTCTGGGATGGGAACAAG TTTTCACCCTTTCTGAGTATTCATTGAAGGTTAGCAATGGGAATCATATAGTTGAACCCTCTCTGGAATTGTATCATGTA TGAGCTACCTTTTCCCCTTTTTCTTCATTTTGATGACAGAAGTAATTAAATATATGTGAGGGATGAGGATAGGAGTAAAA GAAAATAGAAACAAAAAACTAGAGATATCATCTCCATATGAATGTGCACTTTACAAACATTCCTCAAAGAGATATTCAAA CTAAAATCATCCCATAGTTGTACCAATGAATGATTTCTACATATAATCATTGGTTATTGGTGTTTAAAATGCATGTGATT TTGATACTATAATATACATGGCTGACCTTGGATGATACTTGTATGCAAATGATCAGATGAATCATGTCCAACTTTGAATG GTGTTTGCTGGAGATATTGATCCTGAATGCTTCTTTGGAGAAGATATGGCTTTACCACCAGATGATTTTAATTTTCTACA CCTCCTTGTTCAGGTATAGTTAAATTATTACAAGAGAGCTAACATTGAGTATAGCTTCAACCTCTATTTTTTAATAGCTG CTATTGTCATTTGCAATTAAGGGGTTGTTTCTGAGTTAGTTTTTGGAGGGAAAGGAATAGAAGGGCATATTTTTTATTTT CAAATAAATAATATTTAATTTGATGATATTTTAAAAAAAATCTATGAAATGATAAATTAGCATCAGCACAACATACTAAT AACTTATTTATTATAAAAAATATTATGTAAATCTTCTAATTTGAAAAATAAGAATATATCCTCCCCTTTCTTTCCCTCGA AAAACCTCCAAAAACTAACTCGCAAAACACCCCTAAATGAATTCCTATTCTAAAAATTGTGTTAATACATATTTGGATTC TCATTGGATTAGCCTAAATCAATTCTCAAGGGTAGAAGCTATACAGAGTTGCTTCTCATTTTACATTTATTCCAGAATCG ATTCTGCTTTAACTTGGGAAACCAACTAGTTTCCAAACGGCAAACATGCAATTACTCCATTTGCTAAGTCAGTCTTAATA CTCGACCAGTTGGTTTTTTCATTTCTCAGAATATCATACTTATATCTGCACGCAATTCAAACAGTTAATGTCAGATTGAA TGTGAAGATATTTTTCTGCCTATTTCAGGACTCAAATAGCCTGTATTCAATGAAGTCCCTCAATCTGACAGTTGTTTTTT GATCCTATACATTTGGCCAAATCTCAGCTTTGCATTTTTCACTCCAATAAAAGGTTGGTAGTTTTGCATTCTATCATTTG GCGTGAGTTCTTTCAGTATTTATCAATGTTTCCCCCCCCCCCCCCCCCCCCTTCCTACAGGGATAAGAAAGCTACTTGTA ACGAGCAGAACTGGATATAGAGATGTGCAAAGCTACAGGAGAGTCTGTTTGCATCTGCTTTTCATTATTGCCAATAATAA AATTTCATTTTCTTTTTTATTACATTGTTTGTAAAGGCATCTAAGTTCTGAAAAAATTAGAAGGACTTCCCTTGTTTTTG AAAATTACACCTGGCTCTGAATCTTATACTAGCACATACATAGTATGAGCTATCTCTTCTTGTTTCTAAAATTACACAGA GCTCCCTTATATAAATTCCAGTATACCTTACATTTCCCAGGAGATATATGGGAGGTCACCTTTTGTTGCAGAATCAAGAA GGGAGGTCTGTCTAATTTTATCAAACCTTGTCGGGTTTGTGTCTATACATTCTTATGAGAAGAGAGTGAATGATTCTGTT ACTGTGTTAACATTAAATTCTCATGAGAAGAGAGTGCATGGTTCTATTACTGTGTAACATTATTTTTACCTTCCGCAATA TATTTTAGATTGCTCAGAAAGATAATGAATATGAAAATCATATGGAAGTACATGAAACCTTGCTGTTCATTATGTTGGTT TGATCATTATGTATGGTACTGAA
CDS sequence (LotjaGi6g1v0001000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTGAGGCTTCAACTTTTAGAATCCGCTACTCTTCCACTTGAAAACTCTGTATCCATTCCCATCCCCAAACATCA CGCACTGCCCCATTCTCCCAATGGCATACACCAAGAATTTCGACTAAAGAAACTGAATCTGGAGAAAAATGTTGACTCTG GGATTCCACAGAAAAGGGGTGATAATGGGTCTGTTCTGAAGCAGCGCAAGGTGCACTCCAGATGTTCGAAGAAATGCTCA TCTTACAGTGGATGTATTCCTGCAGTTCTACAAGCTTTGAATACCATTCAGGATTTGGATGAGGCGCTCAGACCATGGGA GGAGAGTTTCTCCAACAAGGAAATGAGTATTATTTTGAAGGAACAGGTTTCTTGGCAGAGGGCATTGCAGATTTTCGAGT GGTTCAAGAAGAAAGGTTGTTATGACTTGAACGTGATTCATTATAATATAATGCTTTGGATACTCGGCAAAGCCCGAAAG TGGAGCCTTGTGGAGAGTTTGTGGAATGAAATGAATTTCAAAGGGGTTGCGCCTGTCAATTCCACATATGGAACCTTGAT TGATGTTTTCAGCAAAGGTGGACTTAAAAAAGAAGCACTTGCTTGGCTTCAAAGGATGCAAAGTCAAGGGATGGAACCTG ATGAGGTCACAATGGGGATTGTCGTTCAATTGCACAAGAGGGCCGGAGAGTTCCAAAAAGCTGAAGAGTTTTTCAGGAAA TGGTCAAATGGTGAACCTTTAAGATTAGGGATTAATCATGATAAGGTGGACACTGCACATCTGAACAATGAGGGATCACA TATCAACGTTTGTTTAAGCTCACGGACATATAATACCTTGATTGACACATATGGAAAGGCTGGTCAACTTCGAGCAGCAT CTGTAACTTTTGCTAACATGATCAAACAAGGGATACCCCTGACCACAGTGACACTCAATACAATGATTCACTTGTACGGA AACCATGGACGTCTACGGGAAGTTAGTTTGCTGTTGCAGAGAATGGAAGAGCTTCAATGCCCACCTGACACACGGACATA TAATATCCTCATTTCTCTTTATGTCAAACATAATAATATCAACATGGCAGCAAAATATCTTGCAAAGATGAAAGAGGCCT GCCTTGAACCTGACCATGTGAGTTACCGTACCCTCTTGTATGCATACTCAACTAGGAAAATGGTCAAAGAAGCTGAAGAA CTCGTACAGGAGATGGATGAAAGGGGTCTTGAGATTGATGAATTAACTCAATCTGCTTTGACTAGGATGTATGTAGAGTC AGGTATGCTTGAGCAGTCATGGTTATGGTTCAGAAGGTTCTACCTAGCTGGGAGTATGACTTCTGAATGTTATTCCGCCA TTATTGATGCATATGGCAAACAAGGTTACACTTTAGAAGCAGAGAAAGTCTTTTTGTGCTGCAAAGAAAGGAAGAAGCTC AGCGTCCTTGAGGTTAATGTGATGATTAAAGCTTATGGAATAGGGAAATTCTATGATAAAGCATGTCTATTATTTGATTC TATGGAGGAATTTGGTGTTGTTGCAGACAAATGTACCTTCAGTTCTCTCATACATATTTTGGCCAGTGCTGACAAGCCAA ACATTGCAAAACTTTATGTGAAAAAAATGCAGGAGACAGGATTGGTGAGTGATTGCATCCCATATTGTGCAGTGATAACA AGCTTTGCAAAGTTTGGACAATTGGAAATGGCAGAAGAATTATACAAGGAGATGATTGGATATGGTGTGCAGCCTGATGC CATTATTTTTGGTGTATTAATCAATGCTTTTGCTGATGCGGGAAGTGTTAAAGAAGCCATCAGCTATGTTGATGAAATGA GAAAGGCAGGCTTGCCAGGGAATCCAGCTATATGTAACTCTTTGATAAAGTTGTATACTAAAGTAGGCTACCTGAAAGAA GCACAAGAAACATACAAGTTGCTTCAATCATCACAACAAGGCCCTTCTGTATTTTCTTCAAATTGTATGATTGATCTTTA TACTGAGCGAGTTATGGTTGAACAAGCAAATGAGATATTTGAGATCTTGAGGGAGAATGAAGTTGCCAATGAGTTTTCTT TTGTGATGATGTTATGCATGTATAAGAAAATTGGTAGACTGGATGAAGCCATTCAAATTGCAAATCAGATGAGGAAACTA GGACTCTTGACTGATCTATTGAGTTATAATAATGTGCTTGGCTTGTATTCTATGCGCAAGAGGCTAAGGGAAGCTAAAGA GACATTCAAAAAAATGATAGAATCTGGCATTGAACCTGATGATTTTACTTTCAGAGCTCTTGGACATCTTTTGCTGAATT GTGGTGTTTCAAAGCAGGCTGTTGGCAGGCTAGAAGTAATGGTGAAGAGGGATGCTCCTCGTGGCTTGCAATCGTGGCTG CTGACACTTTCATGTGTGCTTGAAGGGGATGGTTATAGCTGTACAAATGAATAG
Protein sequence (LotjaGi6g1v0001000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRLQLLESATLPLENSVSIPIPKHHALPHSPNGIHQEFRLKKLNLEKNVDSGIPQKRGDNGSVLKQRKVHSRCSKKCS SYSGCIPAVLQALNTIQDLDEALRPWEESFSNKEMSIILKEQVSWQRALQIFEWFKKKGCYDLNVIHYNIMLWILGKARK WSLVESLWNEMNFKGVAPVNSTYGTLIDVFSKGGLKKEALAWLQRMQSQGMEPDEVTMGIVVQLHKRAGEFQKAEEFFRK WSNGEPLRLGINHDKVDTAHLNNEGSHINVCLSSRTYNTLIDTYGKAGQLRAASVTFANMIKQGIPLTTVTLNTMIHLYG NHGRLREVSLLLQRMEELQCPPDTRTYNILISLYVKHNNINMAAKYLAKMKEACLEPDHVSYRTLLYAYSTRKMVKEAEE LVQEMDERGLEIDELTQSALTRMYVESGMLEQSWLWFRRFYLAGSMTSECYSAIIDAYGKQGYTLEAEKVFLCCKERKKL SVLEVNVMIKAYGIGKFYDKACLLFDSMEEFGVVADKCTFSSLIHILASADKPNIAKLYVKKMQETGLVSDCIPYCAVIT SFAKFGQLEMAEELYKEMIGYGVQPDAIIFGVLINAFADAGSVKEAISYVDEMRKAGLPGNPAICNSLIKLYTKVGYLKE AQETYKLLQSSQQGPSVFSSNCMIDLYTERVMVEQANEIFEILRENEVANEFSFVMMLCMYKKIGRLDEAIQIANQMRKL GLLTDLLSYNNVLGLYSMRKRLREAKETFKKMIESGIEPDDFTFRALGHLLLNCGVSKQAVGRLEVMVKRDAPRGLQSWL LTLSCVLEGDGYSCTNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 86 | 236 | 151 | 3.1E-26 | ||
| PANTHER | 121 | 242 | 122 | 3.1E-102 | – | |
| Pfam | 144 | 191 | 48 | 4.1E-8 | ||
| ProSiteProfiles | 144 | 178 | 35 | 9.898 | ||
| ProSiteProfiles | 179 | 213 | 35 | 10.106 | ||
| TIGRFAM | 182 | 215 | 34 | 3.6E-6 | ||
| ProSiteProfiles | 214 | 244 | 31 | 6.522 | ||
| Gene3D | 259 | 448 | 190 | 8.0E-42 | ||
| ProSiteProfiles | 273 | 307 | 35 | 10.731 | ||
| PANTHER | 273 | 432 | 160 | 3.1E-102 | – | |
| TIGRFAM | 276 | 308 | 33 | 2.3E-6 | ||
| Pfam | 277 | 433 | 157 | 5.2E-10 | ||
| SUPERFAMILY | 279 | 474 | 196 | 4.97E-7 | – | |
| ProSiteProfiles | 308 | 342 | 35 | 10.413 | ||
| TIGRFAM | 310 | 344 | 35 | 1.4E-5 | ||
| ProSiteProfiles | 343 | 377 | 35 | 10.49 | ||
| TIGRFAM | 346 | 378 | 33 | 1.5E-6 | ||
| ProSiteProfiles | 378 | 412 | 35 | 10.643 | ||
| TIGRFAM | 380 | 414 | 35 | 4.7E-6 | ||
| Coils | 398 | 418 | 21 | - | – | |
| ProSiteProfiles | 413 | 443 | 31 | 5.24 | ||
| ProSiteProfiles | 447 | 477 | 31 | 7.278 | ||
| PANTHER | 448 | 698 | 251 | 3.1E-102 | – | |
| Pfam | 450 | 477 | 28 | 0.0016 | ||
| ProSiteProfiles | 481 | 515 | 35 | 8.133 | ||
| Gene3D | 483 | 651 | 169 | 2.0E-36 | ||
| TIGRFAM | 486 | 516 | 31 | 1.1E-4 | ||
| Pfam | 500 | 650 | 151 | 1.7E-7 | ||
| ProSiteProfiles | 516 | 550 | 35 | 8.024 | ||
| ProSiteProfiles | 551 | 585 | 35 | 11.192 | ||
| TIGRFAM | 555 | 587 | 33 | 1.9E-6 | ||
| SUPERFAMILY | 562 | 758 | 197 | 2.62E-8 | – | |
| ProSiteProfiles | 586 | 620 | 35 | 10.095 | ||
| TIGRFAM | 589 | 619 | 31 | 4.2E-5 | ||
| ProSiteProfiles | 621 | 655 | 35 | 8.736 | ||
| Gene3D | 652 | 801 | 150 | 8.0E-23 | ||
| ProSiteProfiles | 656 | 686 | 31 | 6.522 | ||
| ProSiteProfiles | 690 | 724 | 35 | 9.591 | ||
| Pfam | 693 | 722 | 30 | 0.079 | ||
| PANTHER | 696 | 790 | 95 | 3.1E-102 | – | |
| ProSiteProfiles | 725 | 759 | 35 | 11.466 | ||
| Pfam | 726 | 767 | 42 | 1.3E-7 | ||
| TIGRFAM | 728 | 760 | 33 | 2.3E-6 | ||
| ProSiteProfiles | 760 | 794 | 35 | 5.404 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0001000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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