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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033443
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 61 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.540s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0010869.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 4279241 4281725 +
2 domain predictions
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Lj0g3v0015519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357487221|ref|XP_003613898.1| chr0 6048263 6049099 +
2 domain predictions
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Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
2 domain predictions
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Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
2 domain predictions
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Lj0g3v0076569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29218756 29228567 -
2 domain predictions
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Lj0g3v0076569.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29225527 29228567 -
2 domain predictions
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Lj0g3v0081319.1
n.a. PREDICTED: proteinaceous RNase P 2-like [Cicer arietinum] gi|502077839|ref|XP_004485760.1| chr0 31736423 31738588 +
2 domain predictions
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Lj0g3v0140499.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 64552462 64555057 +
2 domain predictions
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Lj0g3v0257829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 133865766 133867697 +
2 domain predictions
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Lj0g3v0278819.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Glycine max] gi|356536609|ref|XP_003536829.1| chr0 144720186 144725147 -
2 domain predictions
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Lj0g3v0292069.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial-like [Glycine max] gi|356547476|ref|XP_003542138.1| chr0 151562678 151569667 -
2 domain predictions
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Lj1g3v2581180.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like isoform X1 [Cicer arietinum] gi|502104762|ref|XP_004492640.1| chr1 29716516 29720105 -
2 domain predictions
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Lj1g3v2980350.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] gi|356513749|ref|XP_003525573.1| chr1 33947040 33957302 -
2 domain predictions
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Lj2g3v0636940.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like [Glycine max] gi|356531124|ref|XP_003534128.1| chr2 10405767 10409386 +
2 domain predictions
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Lj2g3v1252580.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cicer arietinum] gi|502094348|ref|XP_004490197.1| chr2 19863746 19867397 -
2 domain predictions
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Lj2g3v1252590.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cicer arietinum] gi|502094348|ref|XP_004490197.1| chr2 19864963 19867397 -
2 domain predictions
 –
Lj2g3v1252590.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cicer arietinum] gi|502094429|ref|XP_004490216.1| chr2 19864963 19867397 -
2 domain predictions
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Lj2g3v1252590.3
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cicer arietinum] gi|502094348|ref|XP_004490197.1| chr2 19864963 19867397 -
2 domain predictions
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Lj3g3v0821140.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357457245|ref|XP_003598903.1| chr3 9949757 9955335 +
2 domain predictions
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Lj3g3v1011170.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Vitis vinifera] gi|359493757|ref|XP_002279701.2| chr3 13496031 13511501 +
2 domain predictions
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Lj3g3v2888330.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max] gi|356544848|ref|XP_003540859.1| chr3 35726583 35728691 -
2 domain predictions
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Lj3g3v3409060.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cicer arietinum] gi|502144990|ref|XP_004505826.1| chr3 41996597 42006457 -
2 domain predictions
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Lj3g3v3409060.2
n.a. n.a. chr3 41997476 42006457 -
2 domain predictions
 –
Lj4g3v0109500.1
n.a. n.a. chr4 980169 987041 -
2 domain predictions
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Lj4g3v3071570.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] gi|356527775|ref|XP_003532483.1| chr4 40859027 40859505 +
2 domain predictions
 –
Lj4g3v3071580.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] gi|356527775|ref|XP_003532483.1| chr4 40860556 40864507 +
2 domain predictions
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Lj5g3v1598320.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like [Cicer arietinum] gi|502117672|ref|XP_004495896.1| chr5 22953350 22955081 +
2 domain predictions
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Lj5g3v1697120.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Cicer arietinum] gi|502118054|ref|XP_004496078.1| chr5 24180481 24183712 +
2 domain predictions
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Lj6g3v1722680.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr6 19517242 19519814 +
2 domain predictions
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Lj6g3v1984340.1
n.a. n.a. chr6 22936096 22939849 +
2 domain predictions
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LotjaGi1g1v0098200.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G73710.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710; TrEMBL-Plants: tr|A0A1J7IG49|A0A1J7IG49_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0098200 LjG1.1_chr1 14963570 14973611 +
2 domain predictions
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LotjaGi1g1v0098200.2
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G73710.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710; TrEMBL-Plants: tr|A0A1J7IG49|A0A1J7IG49_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0098200 LjG1.1_chr1 14963622 14973611 +
2 domain predictions
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LotjaGi1g1v0235000_LC.2
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT4G21900.1 proteinaceous RNase P 3; Swiss-Prot: sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3; TrEMBL-Plants: tr|I1LTU0|I1LTU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0235000_LC LjG1.1_chr1 55484437 55487046 -
2 domain predictions
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LotjaGi1g1v0463100.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G01970.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970; TrEMBL-Plants: tr|I3T422|I3T422_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0463100 LjG1.1_chr1 96788196 96792099 -
2 domain predictions
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LotjaGi1g1v0463100.2
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G01970.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970; TrEMBL-Plants: tr|I3T422|I3T422_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0463100 LjG1.1_chr1 96788196 96792452 -
2 domain predictions
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LotjaGi1g1v0463100.3
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G01970.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970; TrEMBL-Plants: tr|I3T422|I3T422_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0463100 LjG1.1_chr1 96788324 96791650 -
2 domain predictions
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LotjaGi1g1v0506000.4
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G13800.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800; TrEMBL-Plants: tr|A0A1J7GMU7|A0A1J7GMU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0506000 LjG1.1_chr1 102427458 102433592 -
2 domain predictions
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LotjaGi2g1v0191900.1
n.a. Pentatricopeptide repeat-containing protein family; TAIR: AT1G05600.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SYK1|PPR11_ARATH Pentatricopeptide repeat-containing protein At1g05600; TrEMBL-Plants: tr|I1L425|I1L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191900 LjG1.1_chr2 62335619 62338151 +
2 domain predictions
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LotjaGi2g1v0294500.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G69290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290; TrEMBL-Plants: tr|A0A1J7HII5|A0A1J7HII5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0294500 LjG1.1_chr2 76920236 76925139 -
2 domain predictions
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LotjaGi3g1v0003600.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial; TrEMBL-Plants: tr|K7M423|K7M423_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0003600 LjG1.1_chr3 446613 453741 +
2 domain predictions
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LotjaGi3g1v0003600.2
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial; TrEMBL-Plants: tr|K7M423|K7M423_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0003600 LjG1.1_chr3 446717 453448 +
2 domain predictions
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LotjaGi3g1v0019800.1
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT2G32230.1 proteinaceous RNase P 1; Swiss-Prot: sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A182BFB0|A0A182BFB0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0019800 LjG1.1_chr3 2047833 2052778 -
2 domain predictions
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LotjaGi3g1v0116500.1
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT4G20740.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740; TrEMBL-Plants: tr|G7J1P0|G7J1P0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0116500 LjG1.1_chr3 14249016 14254764 -
2 domain predictions
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LotjaGi3g1v0116500.2
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT4G20740.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740; TrEMBL-Plants: tr|G7J1P0|G7J1P0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0116500 LjG1.1_chr3 14251167 14254687 -
2 domain predictions
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LotjaGi3g1v0129100.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT4G21900.1 proteinaceous RNase P 3; Swiss-Prot: sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3; TrEMBL-Plants: tr|I1LTU0|I1LTU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129100 LjG1.1_chr3 15870117 15878284 -
2 domain predictions
 –
LotjaGi3g1v0150700.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G04790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial; TrEMBL-Plants: tr|G7JF19|G7JF19_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0150700 LjG1.1_chr3 20261491 20284206 +
2 domain predictions
 –
LotjaGi3g1v0235800.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G04790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial; TrEMBL-Plants: tr|K7LW88|K7LW88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235800 LjG1.1_chr3 37480598 37491429 -
2 domain predictions
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LotjaGi3g1v0235800.2
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G04790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial; TrEMBL-Plants: tr|K7LW88|K7LW88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235800 LjG1.1_chr3 37480768 37491432 -
2 domain predictions
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LotjaGi3g1v0235800.3
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G04790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial; TrEMBL-Plants: tr|K7LW88|K7LW88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235800 LjG1.1_chr3 37480819 37491335 -
2 domain predictions
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LotjaGi3g1v0519600.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G34830.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein MRL1, chloroplastic; TrEMBL-Plants: tr|A0A0B2R0K2|A0A0B2R0K2_GLYSO Pentatricopeptide repeat-containing protein, chloroplastic; Found in the gene: LotjaGi3g1v0519600 LjG1.1_chr3 93608114 93619353 -
2 domain predictions
 –