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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014200 |
| Transcript ID | LotjaGi6g1v0014200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2568185..2570226) extracted from Lotus japonicus Gifu genome v1.2.
TTGACTTTGTGTAGTTTGATTGAACCTGTATGCTCAACAAATGAAGATAAGCTGTTTGATTTAATGTCTGATAGAAATGT GGTTGATTCTTTATAACTGCCTATAAGTTGTTTGATCAATTGACTGTGAATTTGTAATAGCATTCTGAAAGCGATGTGTT TGATACAACATTCTGTATAGCTTTTTTTTACCTTGTGATTGATTCCTTACAAATTGCCTATAAGCTGTTTGATCAATTGC TTGTGAAGTTGTGATGGCATTCTGAAAGAAATGTGTTTGATATGACAGGAACATTCACAACAGCACTGAAAGAAGGAAGC TGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCAAAACAGGAAG CGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGATGGAAAATTCTATGTTGTCACTGACTC CAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTATCCAAGATAGGCCTCTCTGGATTGTGT TCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGATGGCAGAGGAGCCAAT GTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGCATGTCCATGACTG CAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCT CCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATG GGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTACATTCTACTTTCCCCTGCATCATCAA TTGAGTTGCTGCTGCAATTTTTTCTAGCTCACATTGTTAATTAATCTGCTTGAAAATTCAGGTGATCCTGCTGGGCCACA GTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACTGATCCAGAGAATG CCACGGTAGTATTTATTGCCACTTTTATTTTGTTTCCCTTTCCTCTTAGTCTGCTTTAAATGTAAATTAATGTTATACCA TAAGACAGGTTGGTTTGGAGAAGCAACAACCTTCTTTCTTGGGTGCATTAATTTTCAGCCTCCTCCTGCTTTAAGAAAAT CACAAAATTTTGTACATGTAGGGTCCAGATTGTGTTAAATCAAGTCATGGGTCGAAAATGAGTTAATCTGAAAAGGTACT GTGTTGAATAATGCAGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATT GGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGAGGTACA ATGCTGTTAATCATGTTTTAGGGTGTGTTTGGGTAAACAACTTAATTAAGTGCTTATTACGATAAAAACTTAATCATAAG TTATTTTGAAAAACATATTGCAATTAGCTCAAATTAAGTTATAAGTAGGTGATCATATAGCCGCGTATTCATAAGCTAAT AGGAGTCATTTATAGATCATAAGCTATTTATATAAACACTATGAAACTCTTGTACAAACACATATACTATAAGATAAACT CAAATAAGTTGAGTTTCACATTGAATTTGCTGATTTATTGAGACAAATTGCTGTTGGCAGGTGACTAAGAGGGTGGAAAC AGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTACTTCACCCCATCTG GAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGGTACTATGACTTCT AATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
CDS sequence (LotjaGi6g1v0014200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGATGGCAGAGGAGCCAATGTCCACATTGC TAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGCATGTCCATGACTGCAAACCCACTG GGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGC TCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGC TATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTGATCCTGCTGGGCCACAGTGACTCTTACACTAGAGACA AGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACTGATCCAGAGAATGCCACGGTGTAGACATGGATAT TTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCA GGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGAGGTGACTAAGAGGGTGGAAACAGCTCAAACTGAGTGGA AAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTACTTCACCCCATCTGGAGCTGGAGCATCAGCT AGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGGTACTATGACTTCTAATGCTGGTGCACTCGG TTGCCGCAGAGGCCGCTCCTGCTAG
Protein sequence (LotjaGi6g1v0014200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVITLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFG SSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGY FHVVNNDYTHWEMYAIGGSGNPTINSQGNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASA SYARASSLGAKSSSMVGTMTSNAGALGCRRGRSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 6.1E-194 | – | |
| PANTHER | 1 | 274 | 274 | 6.1E-194 | – | |
| SMART | 1 | 197 | 197 | 3.2E-100 | ||
| SUPERFAMILY | 1 | 268 | 268 | 5.46E-78 | ||
| Gene3D | 1 | 267 | 267 | 1.3E-89 | ||
| PRINTS | 8 | 24 | 17 | 4.5E-59 | ||
| Pfam | 8 | 189 | 182 | 6.7E-21 | ||
| PRINTS | 72 | 93 | 22 | 4.5E-59 | ||
| PRINTS | 152 | 171 | 20 | 4.5E-59 | ||
| PRINTS | 174 | 193 | 20 | 4.5E-59 | ||
| PRINTS | 216 | 240 | 25 | 4.5E-59 | ||
| PRINTS | 245 | 268 | 24 | 4.5E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0014200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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