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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014200 |
| Transcript ID | LotjaGi6g1v0014200.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|I1LAJ4|I1LAJ4_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2568185..2571356) extracted from Lotus japonicus Gifu genome v1.2.
CACTGTATAAATAACTTTTGGGTGTAACTGATTATGCTAGTAATTGCTTCTTTTAATTTGTGGTCCAATGTTCAGAAAAT AAAAAAGCAGTAGTTTAATTAGGTGAAAATTGGTTATATTAGTTGAAGTAGTAGTACATTGATTGATGTAAATTTGGTTG TAAGAATGTTTAATATAGTTTATTTAGGTCTATTGGCACAAATAACTAGCTCTATAGACTAAGGAAATAAACAAACATTA TACAGTATTGAATTAATCAATTGACCATGATTATGATTTTGGGTTTTGATTTCTATTTGCAGGGCAAAAGAAGCTGAGGA ATTGAATGAGCGTGCTGCGGTGGCTAACCCAGAGGAGGTTGCTTCAATGGTTGCGATGTGGGTCTTTCTTTCTACATTTT TCAACTTAGACAATTCTTGTTGCATTGTCCATTCTTAGCTAGGCAACGAAAATTAGAGAAAAAGAGAAAACTTAATGCAC CTCACCTCACTCACTGCATTAATCCATAATGATATGTTCACGTGGTTTAGGCGGGTTGTAGGGTATGGTGTTCCCTCCCA TTGTTGGAACCCCTAATAACTCTCTTCACCAACTGACCCATATTTTTCTCTGTCACGTTACTTTCCTGGTTTTGACATAG TTGAATGAAATTGAATTTGTGACGACTCACCCGTTTTTTATTTTACCCCTTTAGGGATTTCAAGTTGGAACCTTGTCCCT GACTACCTACATTCTCGCTCACTCTCCCTTTCACCCTTCATTGACTAACATCACATACACTATTTCACACCCGTTTTTCA CGCTTATAATAATTTTCCCATGTCTTTGAGTAAATGTTTTATACAACTCTTTCTGTCCCATGTTTTGTAATTATAATTAT AATACTTGTTTCTTGCAGTTCTATTCTGCTTGATCTAGTTTTCTGTATTAAAACATTTACCATGTCATTGGTTCCTTACA AGTTACAACGTGTCTGCAGTAGCATTATTTGTGTCAAGATCCGTGTAATGTCAAAAATGCATATTCATCATATCTTCCAT TCCAGATAAAGCCAAAAGGATTAGCCGTTATACTTGAATGTGTAACACTTATTGTCATGGTATTAATGATCATATGATAA CTTGAGGAAATTGACTTTGTGTAGTTTGATTGAACCTGTATGCTCAACAAATGAAGATAAGCTGTTTGATTTAATGTCTG ATAGAAATGTGGTTGATTCTTTATAACTGCCTATAAGTTGTTTGATCAATTGACTGTGAATTTGTAATAGCATTCTGAAA GCGATGTGTTTGATACAACATTCTGTATAGCTTTTTTTTACCTTGTGATTGATTCCTTACAAATTGCCTATAAGCTGTTT GATCAATTGCTTGTGAAGTTGTGATGGCATTCTGAAAGAAATGTGTTTGATATGACAGGAACATTCACAACAGCACTGAA AGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCA AAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGATGGAAAATTCTATGTTG TCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTATCCAAGATAGGCCTCTC TGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGATGGCAG AGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGCATG TCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGATGGA GATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCTTGTGGA TGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTACATTCTACTTTCCCCT GCATCATCAATTGAGTTGCTGCTGCAATTTTTTCTAGCTCACATTGTTAATTAATCTGCTTGAAAATTCAGGTGATCCTG CTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACTGAT CCAGAGAATGCCACGGTAGTATTTATTGCCACTTTTATTTTGTTTCCCTTTCCTCTTAGTCTGCTTTAAATGTAAATTAA TGTTATACCATAAGACAGGTTGGTTTGGAGAAGCAACAACCTTCTTTCTTGGGTGCATTAATTTTCAGCCTCCTCCTGCT TTAAGAAAATCACAAAATTTTGTACATGTAGGGTCCAGATTGTGTTAAATCAAGTCATGGGTCGAAAATGAGTTAATCTG AAAAGGTACTGTGTTGAATAATGCAGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGAT GTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCA AGGAGGTACAATGCTGTTAATCATGTTTTAGGGTGTGTTTGGGTAAACAACTTAATTAAGTGCTTATTACGATAAAAACT TAATCATAAGTTATTTTGAAAAACATATTGCAATTAGCTCAAATTAAGTTATAAGTAGGTGATCATATAGCCGCGTATTC ATAAGCTAATAGGAGTCATTTATAGATCATAAGCTATTTATATAAACACTATGAAACTCTTGTACAAACACATATACTAT AAGATAAACTCAAATAAGTTGAGTTTCACATTGAATTTGCTGATTTATTGAGACAAATTGCTGTTGGCAGGTGACTAAGA GGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTACTTC ACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGGTAC TATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
CDS sequence (LotjaGi6g1v0014200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGATGAACATTCACAACAGCACTGAAAGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGA TGATTGCTGGCGTTGTGACCCCAACTGGCAGCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACG CCATTGGTGGCCGTGATGGAAAATTCTATGTTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACT CTTCGCCATGCTGTTATCCAAGATAGGCCTCTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCT CATCATGAACAGCTTCAAGACAATTGATGGCAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGT ATGTTACCAATGTCATCATCCATGGCCTGCATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCA ACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAA CTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCA CCCACCACAATGAGGTGATCCTGCTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTAT AACCACTTTGGAGAGGGACTGATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACAC TCACTGGGAGATGTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTA ACCCTTTTGCCAAGGAGGTGACTAAGAGGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGA GACTTGCTGCTGAATGGTGCTTACTTCACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGG AGCTAAATCTTCTTCAATGGTTGGTACTATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
Protein sequence (LotjaGi6g1v0014200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAMNIHNSTERRKLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGKFYVVTDSRDDDPVNPRPGT LRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHVHDCKPTGNAMVRSSP THFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAY NHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEG DLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGTMTSNAGALGCRRGRSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 372 | 372 | 6.2E-265 | – | |
| PANTHER | 1 | 372 | 372 | 6.2E-265 | – | |
| SUPERFAMILY | 3 | 366 | 364 | 1.17E-104 | ||
| Gene3D | 23 | 365 | 343 | 1.4E-124 | ||
| PRINTS | 46 | 63 | 18 | 1.6E-83 | ||
| PRINTS | 70 | 95 | 26 | 1.6E-83 | ||
| SMART | 98 | 295 | 198 | 1.1E-101 | ||
| Pfam | 106 | 287 | 182 | 1.4E-20 | ||
| PRINTS | 106 | 122 | 17 | 1.6E-83 | ||
| PRINTS | 170 | 191 | 22 | 1.6E-83 | ||
| PRINTS | 250 | 269 | 20 | 1.6E-83 | ||
| PRINTS | 272 | 291 | 20 | 1.6E-83 | ||
| PRINTS | 314 | 338 | 25 | 1.6E-83 | ||
| PRINTS | 343 | 366 | 24 | 1.6E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0014200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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