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LotjaGi6g1v0025400.1

Overview

Field Value
Gene ID LotjaGi6g1v0025400
Transcript ID LotjaGi6g1v0025400.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:4580010..4586822) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATAAATATTGATGAGTAAATAATGATGTTGGGATTGGGATTGGGACCACGTGGTGATTCTACCACTACTCAAAGCA GCACCTTCTCTATAGCAACGGTTCTATCAAGTTTCATCAGATAAGGTGCACTGCATTCGTTCACAGCCATGGTCGAAGCT TCAAGGATCATGTACACCACCACTCTTCTTCCTAGCTTCACTCCAACAATTCACAAAACCCATCTAGGCCACCGTCACCT CACCGTGTCACGCAAGCACCAAGTTCAATGTTCAGTCTCTGCAAGCACAGATGGTGCCACACGAAGCCGAACCTCAGCCA TTCCTTGGGGTTGTGATATGGATTCAGTAGAGAACGCTTCAGCTCTGCAGAAATGGTTGTCGCAGTCAGGGCTTCCACCG CAGAAGATGGGTATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAATGTTAGGAAAGGGGAGAAGCT TCTCTTTGTGCCTCCCTCACTTGTCATTACTGCTGATTCTGTAAGCCTTTCTTTCTTCTTCCTTTGTCTTAACATAGGTT GATTCAAACCATAAATAAATAAAAATATAAAATAGACAGGTGAGATTGGAATATATTAAGTGAAAAGTATGTTGGAATTG CCACCATCTAAGCCATGTTTAGATATATCTGTTAGCATAAGTAAAAATATCCCTGAAGGATAGCTCAAGTGGTAAGAGCT AGGGACATAATTGTTGGGTGAGATGAAGGGTGAAAAGTCTTAGGTTCGAACCTGAGAGGACTAATTTACTAACATTACTA ATAACTAACATTTTCTATCAAAAGAAGAAAAAAAGCATAAGTACAAATAGCTCTGTTTGGATTTCTATCGGGTGAATGTG AAAGCACGTTCGCCCAATCCAACAAGTTCAGCCTATGTTTGGTTTTCAGTTTGGAAGTCCGTTTGAGGCAATGGAATTCG AGATTACACGTTCCAATGCACCAAACTTGAAAGAGGCTTTGGACCTCCGTTGGGTGAAAGTACTTTCAAACTGAAAACCA AACAGACACTCATTCTCCTGGGTGAATGTGCATTGGAAGTCGTGAGGTACCAAATGTTGTTTTGGTCATAAGTGCGAATA GATGTTGGTACGCGTTCCAAAGAATTCTAGAAATGAACGCGACATTTTATATGCATTGAAATGAAAGTCTGTTCATTAAA CACCACTGGTTATTCAATCCAAGAAAGTTCCTTTACATATGCTTAAAAGTTGAACAAAACATAAGGGTATTAAGTTCTGC TATATCCTATCATAAGGACGTGTTGAGCGCACATTCCAATGCAGTTTGAATGTACTTTTTGCCAATCCATGTCTCTTGTA TTTGTGTCATTAGAGTGAATGTGCTTTTGGCAAATTTGAACGTAAATACAAACATACACCGATTGATTTCATTCTAAAAG TTCATTTAACTATACAATATTTAGTAGAAGTAAAATATTTATACTCCCTTGTGTTTTCCTTCAAAATATATCTTTAAGAA ATTTGCTTATTGCCTGTCAATTATATATGTAGTTATCTACTGTACTGTCTGTGTCAACAGCATTACATTATTCAGTCCAC ACAAAAATTTGATAAGAACCATCAAACTTGATTTGTATTTTGTATTTGTTACTTTTTTGTCTGGTGTTTTATGGTTCTGT TTGGATTGTGTTGTATGTTTTCTGGTTGTCAGGAGTGGAGCTGCCTAGAAGCTGGTGAAGTTTTGAAAAAGAATTCAGTG CCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGCCTCATGAAATCTTCAAGATGGTCAAATTATATATC AGCTTTGCCTCGTCAACCTTACTCACTTCTATACTGGTAAAAGAATTGTTCTTAGAGATTGTCTAGTAAGAGATTGTCTG AGAAGGATGAGAGAAATGAATATTGATGGGAATCGCAGTTAGGGATTGATATGCTATCTTACTACAAGTGAAAGATAAAA TTAGAACATGACATGTATTTAATATTTATGCATTACAAGGCTTCTAAAAGTATAATTTCATTTTGAAGCTAGAACATGAC ATGTATTTAGTATTTATGCATTATTCTTCTGGATTTCTGATTTCTTAATTTTTCCCCCTTTATTTTCTTCCTGTCTTAAT TTTGGCCTCAATCAGAATATCCCAATCGATTATTTCCATAAAAACTTTTAGGGTCTACTCATATTCACTTCTGTCGTTTC AGGTCACAAGAAGAACTGGATCGCTACTTGGAAGCTTCTCCGATTAGGGAGAGAGCAATTGAGAGGATTAATAATGTCAT TGGAACGTATGGACCAATTGTTTCTACCTTATATTTCTTCAGGGATTTATTGTCTGTTCATTTCTCTTTTTGGTATATAG CCTCAATCTAATGAGCTTTCTTGATTGAATAATCCTGTCTCTTGCTATAATTAACACACTTCCCATTTCATCACCAGATA CAATGATTTGAGGCTCAGAATATTTTCCAAATACACTGATTTATTCCCTGAAGAGGTAAATTCCTCCCATTGAGTACAGG ATGAAGTTAATAGTTCATGAAAACCAGACTTTTGAAGAAAGAAACGAAAAGTGAATTGCCACAGACATGTAGTAGGACTA CATGTTCTTTTGTTTTAATTTCTAAATTTGGTTCTTCCTGATTATGTTGGCGACAATTGGTTTCAATACATAGTATGGCT TTGAAAGTTCCTAACAAGATATTATTTGTCATTTTCTTTTGTAAATATTTGCATTGACATATTATTGCATTTTAAGCATC TTGTTTCAGTCAGGTGATTATGATCTAAATCGGTTACTTGTAACTTTCAGGTGTTCAACATGGAGTCTTTCAAGTGGTCA TTCGGCATTCTTTTCTCTCGCATGGTGAGTCAATGTGGTAGATAAAATGAAACAAAATTATGTTGCCGCCTCTTCTGTTA AACACAAGTCTAGCTACTAAGGATTTCCATCTTGTCTTTGTAATGACATATGAATTCATAACAGAGCTGATATTGAAAGA AAGTTAAGGTCCAAAACTAAACAAATGATGAAATGTGTCATGTCTGAGAAAACATAGTTCTCAAAATCGCAACATTTCAA CACTAATTTAGGGGAGAGTAAATAGTTGTATTTGCGATGTTTGGTTCATAGAAAAATATCTTTCTTGTTTTTCTGTCTTC GTGTCTGTAGGCATTTCAATCAATTAATTCAATGAGACTTCGTTTTGTTGTTTCATATTTAAGACAAATGGCAGTCTGGC GGGACATATAATTCATAATCTTTTTACCATGTAGGTTCGTTTGCCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGG CAGATATGCTGAATCATAGTTGTGATGTATGTTCTCTTCCAAACAAGATTCCTCCATGTTTTTCCTCAGTTATTTTAATT CTAACATGCTTTCAATGGTATAGGTGGAGACATTTTTAGATTATGATAAACAGTCAAAGGGGATTGTCTTTACGACAGAT CGGCCCTATCAACCAGGTGAGCAGGTAAACATAAGTTGATGGATTGGAATTTGTTAGACTAACTGAAGAGAAAACAAACA AGGGCCTAAGAAAATGATATGCAGATTCCTTGTGCCTGCCAAAATGCATTGTATATGCAAGAGTAAAACAACTATGTCTC TACCGTTTTAAAGTTTTCCTCAAAAATAAAATGTTAATTAATTGGAGCTGTGTTTGATGGTATTATTCTTCAGTCTTCAC CACTTAGGCCTCGTCATAGTCATTTGATTTAAATCCAGATATCACAATTGATTACTTGCATCAAATTACACAGGTTTTTA TTTCATATGGGAAAAAATCTAATGGGGAGCTTCTGTTATCATATGGATTTGTTACAAGGGAGGGTGCTAATCCTAGTGAT TCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTACAAGGAGAAGTTAGAACTGCTGAAGAAGTATGGGTT ATCAGGGTGAGTACCCAAAATTTCATAATTTTACCTATACATATATGGATGAAGTTCCTCACATTTAGTTCTGATAAAAA CAAAATTCAGAAGCATTCCTAGTTAAGAGGTGGTGTACTGGTGTATGGTTCCTAACTTATTGAACTTAGTTAGTAACTAT GTAAAATAGAGCCTTGTAATTTGTCACCAGCAGTGTCACTTTTATGCTAGAGAAGAGGATTGAGAAGTATGTGATATGGT TGCGTGTTTTAGACTTTTAGTAATAAGTTACACATAATTATAAACAAACTCAATAAGTTACAAACGGTGTACCTGTATGT TAGATCACAGTAGTTTCATCTAGAAGTGCAGAACAATGCTGATAGCCTGATATATTTCCAAAATATCAATTTCCAAGCTT TGAAAAACAGATAACAGAATGTTACTACCTTCACAACTTTCCATGCTTCAAAATAATTATATTTACTTGAAACTTATTGG TCCAACAAATTTTAATCCAACTTCTATTTTAACTGATACAGTTTCAATTATCATAATAGCCATGAGTCCATAGCCAATTG TCACTTAACTTCCCTCCTGGTTGATTTAAGATTTTAATCTTCAGGAAGAAAAGATCATTATTTCCTTTTGGTCGGATTTT CCTTCAAGATATCATTGCGATGTGTACTTTTAGTTGAACTTGAAAATAACTTCAATGCCCTGTCTTTATCAGATCTCAGT GTTTTCCTATCCGAATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTACTTAGCTGTTAGCCCTTCAAGCATGAGA GGACAATTTGAGAAGGTCTGATTCTTACTATATTTGCAAATTACTCTCTGGGTGTTGTATAACCCTATGAATGGTTCTCT TTCCAGATGGCTGCTGCAGCATCGAATAAAATTACTTCCACTAAGGACTTCAAATATCCTGAAATAGAGGAGCAAGCATT GCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTACAGGCAAGGAAAAATTTCGATACAA AATTTCATCCCTTTTCAGTTCACCTTTACAATAGCTATGGTTTTGAAAAACTGAGTTATCTAGTTGTTAGCTTCAAATGA GATAATCCTACCCTTTGACCTGCATGGTAATCACAGTTATCATGAATGATGCATTTATATGATTTTTGCAGGCAAGTGGA TCACTGGATTTGGATGTGACCTCTCCAAAACAACTCAATCGAAGACTCTTTCTAAAGCAGCTAGCTGTGGACTTGTGTAC CAGCGAACGAAGGATATTATACCGTGCTCAATATGTAAGATTATAAAGCACGTTATTTAATTTACGCATATATTTAAAGT TCATTTCCTAGTGCTGATCTTGATTCCATAGCAGCAGCATAGATCTTGGCCGTAGCTTCTTTGTTGATCTGCTTCTTACT TCTTTCTCAAGTCACTCACAGCTTGATTGATGTACAAACTACAAATATCACTTTTTCACTTTCCAAATAAACATAAATTC CATGAGCACGAGTAATTCCATCCCATAACACTGGCCTTGGAGTGAATTTAGTATAGTTAACTATGATTGGTATATATGCA CTTGAATGTTGTCAAGCATGTATGGTGTACAATCGTCCCAGAAAATGAAGAATTGGAATCAAATGATGAAATTATAAACC CCCAATTTAGGTTGGTGCTTTTTTTGTACAATTTTCCTGTCACACAAGAAAAATGACATACAACTAGTCTCTTACAAATT GACAATGTAATATATCTGTTTATCTATATAATTCACTGCTTTTTAATAATAATTGCAGATATTGCGAAGACAACTGAGGG ATATGAGGGATGGTGAACTAAGGGCCTTCAAACTCTTTGATGGTGTCCGGAATTTTTTCAAATGAGGCCATTCACGGGTG CATTGTTTTCTTGTGGATGTATCTATCTTCCCCTTTCATATGATGAACTTTGTTCAGCTCATACATGCTGGGTTTATTGA TAACATATAACTGGTAGTTGCTTCTGTCTATGGATGGTCCTTTATGTTCTGAATCTAAGGCTATGATTGGATTGGTGGAA CTTACTAGAGTGGAACAGAACGAAATGGGATGGAACAGGATAAAAATACATTTCCATTGTTACATTTTATGATAGTGTGA AACAAATTTACCACTGTACTGTTTAGATACTACCACTGTACTGTTTAGATACTGGACGAAACAAAATGAATTATACTTTT TATTTATTCTTAAATTATACTTGTTATAGAAATATTAATTATGGTGTTTAGGAGGACGAACTTATATGTACATAAGTGCT ATATATTAGGAAAACCATTTTGATGAAAAGCATGAAGGCTTCTCTGGCTTCCTATATCAGAGTTATACTTATTCTGGCTT TTCTTAATACTAAAGTATTTAGAATTTTCATTCTATTCAATCTGTGATCCTATAACAGTAAGCAACGAGGAACCATTGTC ACATCCACAAGATTATGCAGCAACGTTTATGTAGACGACCACTTAATCCAGTTCGTTGTATCAAAAAGCACTCGACGGAG AACCAAATTAATATCCCAAGGTTGCGAGCTAAACACATGCTCATTCCTCCAACGCCACGTCCACCAAAGCACACCAATAG AAAATACATTGTGCTGGTTGGAGAGCAGCCCGATGACCAGTTATGAAACAGAACATAGTGCATGCAAAGGGGGGAAGGAT TGCTGAAAAATAATACTGAAGTCTTCGAGAATCTGGGCAAGCACGGAAGAGATGGTGGACATCTTCTATATCTGCATCAT ATCTAGGACAGTG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCGAAGCTTCAAGGATCATGTACACCACCACTCTTCTTCCTAGCTTCACTCCAACAATTCACAAAACCCATCTAGG CCACCGTCACCTCACCGTGTCACGCAAGCACCAAGTTCAATGTTCAGTCTCTGCAAGCACAGATGGTGCCACACGAAGCC GAACCTCAGCCATTCCTTGGGGTTGTGATATGGATTCAGTAGAGAACGCTTCAGCTCTGCAGAAATGGTTGTCGCAGTCA GGGCTTCCACCGCAGAAGATGGGTATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAATGTTAGGAA AGGGGAGAAGCTTCTCTTTGTGCCTCCCTCACTTGTCATTACTGCTGATTCTGAGTGGAGCTGCCTAGAAGCTGGTGAAG TTTTGAAAAAGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGCCTCATGAAATCTTCA AGATGGTCAAATTATATATCAGCTTTGCCTCGTCAACCTTACTCACTTCTATACTGGTCACAAGAAGAACTGGATCGCTA CTTGGAAGCTTCTCCGATTAGGGAGAGAGCAATTGAGAGGATTAATAATGTCATTGGAACATACAATGATTTGAGGCTCA GAATATTTTCCAAATACACTGATTTATTCCCTGAAGAGGTGTTCAACATGGAGTCTTTCAAGTGGTCATTCGGCATTCTT TTCTCTCGCATGGTTCGTTTGCCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTG TGATGTGGAGACATTTTTAGATTATGATAAACAGTCAAAGGGGATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTG AGCAGGTTTTTATTTCATATGGGAAAAAATCTAATGGGGAGCTTCTGTTATCATATGGATTTGTTACAAGGGAGGGTGCT AATCCTAGTGATTCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTACAAGGAGAAGTTAGAACTGCTGAA GAAGTATGGGTTATCAGGATCTCAGTGTTTTCCTATCCGAATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTACT TAGCTGTTAGCCCTTCAAGCATGAGAGGACAATTTGAGAAGATGGCTGCTGCAGCATCGAATAAAATTACTTCCACTAAG GACTTCAAATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAA CAAGTTCTTACAGGCAAGTGGATCACTGGATTTGGATGTGACCTCTCCAAAACAACTCAATCGAAGACTCTTTCTAAAGC AGCTAGCTGTGGACTTGTGTACCAGCGAACGAAGGATATTATACCGTGCTCAATATATATTGCGAAGACAACTGAGGGAT ATGAGGGATGGTGAACTAAGGGCCTTCAAACTCTTTGATGGTGTCCGGAATTTTTTCAAATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVEASRIMYTTTLLPSFTPTIHKTHLGHRHLTVSRKHQVQCSVSASTDGATRSRTSAIPWGCDMDSVENASALQKWLSQS GLPPQKMGIEKVDVGERGLVALKNVRKGEKLLFVPPSLVITADSEWSCLEAGEVLKKNSVPDWPLLATYLISEASLMKSS RWSNYISALPRQPYSLLYWSQEELDRYLEASPIRERAIERINNVIGTYNDLRLRIFSKYTDLFPEEVFNMESFKWSFGIL FSRMVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVTREGA NPSDSVELSLSLKKSDGSYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGQFEKMAAAASNKITSTK DFKYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILYRAQYILRRQLRD MRDGELRAFKLFDGVRNFFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF009328
4 497 494 1.8E-158
IPR011192
PANTHER
PTHR13271:SF98
24 496 473 1.2E-242 –
PANTHER
PTHR13271
24 496 473 1.2E-242 –
Gene3D
G3DSA:3.90.1410.10
31 314 284 5.9E-60 –
SUPERFAMILY
SSF82199
69 316 248 2.75E-53 –
ProSiteProfiles
PS50280
85 301 217 12.423
IPR001214
SMART
SM00317
85 307 223 1.8E-14
IPR001214
Pfam
PF00856
97 301 205 4.9E-17
IPR001214
Gene3D
G3DSA:3.90.1420.10
318 486 169 1.4E-24
IPR036464
SUPERFAMILY
SSF81822
331 498 168 4.84E-24
IPR036464
Pfam
PF09273
335 467 133 1.2E-17
IPR015353

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of
GO:0030785
Molecular function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0025400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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