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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0029400 |
| Transcript ID | LotjaGi6g1v0029400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|A0A0S3S866|A0A0S3S866_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0029400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5186643..5194042) extracted from Lotus japonicus Gifu genome v1.2.
GAATAATGGTCGAAGCAAGTTGGCGGGTGATGATAATGGTCACCACAATTTTTAAAATAATATTGCCAGCTTCATTTATT AAAGCACTGTTACCATCATTTCCCTTTCCTCTTCTCTTCTCTTTACTAATAACAATATTGTCATTCTCTTTGATCGATGC TGTCTAAGCTTAGCTCAGTGTTGGCCATTTTTGTCTCAATCTTATTCTTGATATTATCTTAATCTGGCTTTGATGGACAA GGCAGGTGCTGAAGTTCAAAATGATGCTTCTAGTTCAATGGTGTCTGCAGATCTTGCTCTTCTTCATCACCAGGTAAAAT CTCAATGCTGTGCTGCAACCCTTTTGGCTGTAGCATGGTTTTTCTTCAGATCAAATGAGTTTCCATTTTGTCTGAGCAAC AGGGTTGAAGATTATGAAAATTTCAATCTTTTAGCATCTGGGTAAACAGGAAGTTCACTTTTTTATTTGTTTTCTCTCTC TATGGAGAAAAAAAGTTGTCCTTTTACATTTTTTTTTCCAGTTTTTTTGTGTTTTTTTTCCTACCAAATTCCAATGAACT TGCTTTGATGGTTTCTTAGACATGTGGTGGAAATGGAGAAGATGACCAAACCTCCTTGATTGCTCAGTCCAGAAAACCTA GTCTGTCTTCTCTGCAAATACCAGCAAGGTCAATAGAAAGTGCATTATCTTCTTTTACTAGGACAGATGGTCCCACATTG TCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCAAATTCTGCAAAAGTCAAGTCCTCTATGAGAAATTTACTTTC GGCGAGGAGCTTTCGGGCGAAAACTAGTTCACAAGATTGTGAAAGGAAAGTTCTTATTGTTCCTGACACTTTGCCATCAG ATGGCGGTGCTCTGGATCATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGGTTGTGTTCCCTGCATCAACAAAA GCAGCACATTCGTTGCCGGTTACTCCAAGTGAAAATTCAGGTGGAGAGAATGTAGATGGAAGACATCCAAGGAGTGATTC TGATTTTAGTGTAGGTTTCTGCTGTTCATTCTTGATTCGTGATCACTGCATCTATGGAAGTCACTGTTTTTCTGCATTTC TTTTTATATGAAAATGACTTGTGATTCTTAAAATATGCAACATTAATTAATGTTTTCGTTTTGTACAGAAAATGAAAGTT AATCAACATATGACTCGATCATTTTCAGTTCCGGTTAATGTTCAAACCACTATTTCAAAGCCTACAGATTCTAGGCGCCT GATTCGTGTAATTTCAGCTAGACCAAATCTACCAACTATTGATGACATTTCAAGTCACAATACTTCAGTTTCAGATATTG GTAAGTCACTCTTCATTATATAGGGGACATAAATTACTTTCTTCAACGTATCTCGTTTAAATTTCTTGATCAAAGAATAT GGTTAATCAGAAACTGTCAGTTGTTTTGGCACGCAACAATTTTTTAATATCAGGCACTGAACCATACATAAAAGGTCACA ATGAGAATGCATTGTTTAAAAGACTCTGAAGAGGAAAGATAAGATAGAAGTTATTATTTATCACCTCATTTTCTGTCCTT GTCATCAAGGCAGTGAAACTATTCTTTGTATTTTGTTACACCTAGCTTAATTGGATCTATAAATTAGGGATGGCTTCAAA GTACATAAATTTTTTGGATGGTATCTTTTTAGCACCACCCTTTTTTCAACCAACACCTCCCCACTCGTTCTGGAAATTAA TTTACCGAAGCATAATTGGATGGTGTGGTAGAACCATACTGGTGCTAAAAGTAATCCCCAATGTTTTGAAGGACATCCTT AACCTATTAGCATCCCCCCCTAGAGCCTTTTGCAAGCCGTAAGTTTGTTGTTGTGCCTTCTTATAAACTTAAGTTCTGAT TGTAAGTTAAAGTTATACGTAAGCAAAGACGAGTATGCTATGGATCATATTTTCTTTCGTTATATTGTAAAGCAAGTTTT AATTAAAATAAAACATGTATTAAGAAAATTAGACCAAACCATGAAGAAAGTCAGTTTATGTCCTTCCCAATTGACACACA TAGGGAAGCATTAATCAAACATTGTTAAGTATTTGAAGAAAGCTCTGGGAAAGTGTATTATACAAGGATCATGGACACAT GCAGGTGGAGGCTTTTTCAGATGCTAATTAGGCGGGGTTCCCTATGGATCAACTATTCACAGCATATTGTGTTTATCGTG GAAAAGTAAGAACTAAAATGTGGTGGCATGATCAAGTTACAAGTTGAAATGCTGAATACTAGGCTATGATTCAAACTATT TGTTAACTTATGTGGGTAGATCATTTCTTGGGCAAGATGGGATTTGAGAGCGCATCCACAGTAAAATTGTGGTGTAATAA CCAGGCTGTCATACATATTTCATGAAATCATGTCTTTATGAAAAAAGTAAATATATTGAGATGAGTTATCACTTCATCTA AGAAAAGCTTCAATAAAATTTATATAGGGCTGTCATAATCAGCCCAGACCAATGTAAGGAAGGAAAAACCAACTCAATCA GTACTAAAATCTATCTCCTATAATCTGATTCAGAATCAGATTTTATTAATCTTGTCCTAATACAAATTTAATTACAATAT CAGAAAATATCAATCTAATGCTTACTCTAATAACTCACTGATTAAAACATTGTATAGTGTCTTTCTTTTTATTTTGGATT CAAGGTTTGTATACTGTCAGTGTAAATTTTCTTTAGATAGACTTCCAATTGATTTCCGCCAAATCAGTAAATACATTTTT ATTTTAATTAAAATTAAAAATGAAGGTAATTGTTTCTCCTACATACCGTTATATGATTGGATGTCAGTGTAAAACTGGTG CATCATAATGAAACCATTTTATTTTTATCTTACATTATTTTGTTGTCTTTATATTTGCATTATCAATGATAACTACTTTG AACTTCAGAAATAATATACTTAGTAATTTTTTTGCTTAAAAGTTTACTTACTATATCATTGTCCTTGGTTATCTTGTTAG CCCCAATCTCATATTCCTTCTCCTCTTTATGCGTTTTGTCACTTTGTTTCCTTTCCAGTCATTGAAGATGCTTCTGAGGA TATTCCTGAGGAAGAAGCAGTCTGTAGGATTTGTTTTGTAGAGCTTGGGGAAGGAGGGAATACTCTTAGGATGGATTGCA GTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACCTGTGAT GTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACGCTCTTGAAAATTTCTAATCCTGTAACTGTTGCTTGGCAGCCATT GAATGTACCACAGCAGAGAGAAGTTACTTCCTACAGGTAAGTTTAATTGTTTCCAGTCATGTGCTAATCATTCTTTGTGT TTCATTTCCCTCTGAAACTAACATGTAAGATACCTACAATGTTCTTGTTGTGCTTATTTGTAGGACTATAAGTTCAAAGA CCAACAAGTTTCATACTTTATTTTATTTTATGCTGATACTAAGTCTTGTCTTAATATTGCATATGTCTGATCTGGGGCTG TTCAGAACTAACTTTATGCATTCAAACCTTGAAAAATTAATGTATTTAATGAAGAGAAACTGCTCCAACCTATGGAGGAA AACCCAATATTCATAGAACAAGTCAAAATGACTTATCCTTATGTAATTGGCTGCTAGGCTGTGTAACAAACTTGAAATTA TAGAGTGTGCTAAATTGTGTGTCATTTGAAGAGTTGTGGCATCTCAAGCCCAATAGAAGTGAGTGACTCTTTAAGCATGT GTGAGTGATCACTTGTGTAAATTTGTGCATAAAGCAAGATAGAAGATGTGAATCCGATAACTTCTCCCTCATTGGCCACT CCATCCAAGTTTCGACCATTGAGAGTCAACAAAAAAAACGGGACAATGGGTTGATGCAAGTTGATGATACAGGTAGGGTG ACAGGGTGTTTATGTATGTGATACGAGTAGGGGTTTTGAATTTTAACAATAAATCAAAATGATGTAGTTTTGGTTATGTA TATGCACAATGAGTACCCAATTTTTGTTTGAGAAGTTATTTCGATACGTATCCGATGCATACCTACGAATACCCAACGCG TACAGGGCATGTACTGCTGCAAGAGAAGAATGCCCATGATTTAGAGATTCTGAATTTGAATGTCTCATGTCTCGCAATTA TCAGTAGACAGTGCTTTGTTAGGTCTACATACTTGTGACAAATCACTAGACAATCACGGTCGTTCTAATTTTAGTTTACT CTACAGGATCTGGCAGGATGTACCAGTACTCGTCTTGGTCAGCATGCTGGCATACTTTTGCTTTCTAGAGGAACTATTGG TAGGCTTACCTTGTCAACACTATGACAAAAAATGTTAGACCATTTTACTTGCATATTATAAATAAAATGATCTGAAGCGG GCAGTCACTACGTGGGAGCTGATTCAAAATTATATGGTTGAACTGACAATTGAACAACTGGCATAGCTATAGTTTCATAT GGACCCTTTGAACTACTGGCATTACTATAATTTTATTAATATGTTTTGAACGTAACATTTTGAAAAGTGATTACAATTTT TTAAGGTCAGACATGTAAATCCCCAAAACTAGATTGCTCTTAATTTTATGATCAATTCCATTATTAGCTTGCTTGGAATT GGCCCCATGTATGTCTGCTTCACTAATTGGACAAAGAAAGGGTTGGTGGAGTAAATTTCATAGATAAGGTCTCAAGTGCT GTTTGTTGCTGCTGAGTATAAATAGGATGAATCAGAATGAAATGAACAAATAGAAACACTAGATAGAATACTTGAAAGGG ACAGACGGCATGAATGTGACTTGGAAGATTTATGAAAAATGTATCAGTGTGGACCTATCAATAATATGTAAAATTGCAAA TGATTAACTAATTTTAGGAAGGTATTTTTCTCCATTTTGCAACTTTTATCCAAGTCACTTTAATGAATTATGCCATGCCG TACTTTGTTGCTCATAAGTGAGTTTATTTTTGGGAGAAAATGAGATAATGTTTCTTTGAATATTTCGTTACTAGAAGGCC ATCTTATTAATGTTGTTTATATGAAAAGTGCAGTATAATGTTATATACTCCTCTTGTTAATTATTTCTTTACCTTTATTC TTTGAAATTGGTTTGTACCAGGTTTCTGATTTGGGCTCTCGCGCTCTTGCCATTTCATTACCTTTCTCCTGCGTTTTAGG AATCCTTTCATCTATGATTGCATCAGCCATGGGTAAACTTGCTTCCTTTTGTTTGGCTTATTAAAACAGTAAATTTAGTT CCCGTGATTTTATCCTTTTCTTTTCCTTTTCTGGCTGGTAAGCTTTATTTCCATGGATATTGTTTACATTGAATGCTCCA GAGAATTTTGTCTAGCCATTAAAAGTATCTAGTCATGGTATTTGGGTCTTTAGATGAAACCATAACTATATCTTCAATGA ATTGGATGTAGAAATTTGAGATATGTCAGTCAAATTAGATAGAATTGGAAGCAAGGTACAATCTATGTTTAACCTTACAA TGAATGTCTAATTACAGGTTGGCATGCTGTTCAAACTTGTCATAATGCATGATTGTTTAGCCTGTACTGTTTGGTTGACA TGCCTAGGTAAATAATGTGCTAAGAATTCAGAGAGAGGACTTATATTAGGGAATGAGGATACAGTAAAAATTGGTTAGTT CAAAGAAACAGATTTGTTAACAGCAAGTAATTATTATTTATTCATTGGAAAACTCAATTTCTATTCTTGTTAATTGGATT TAGGATTTCATAAAAATCGATTATGTTATGATCAAATGTTGAAATGTTATTTTGTTTCTGATATGGTACCCTGTAGTTTT CCTGTTCCTTAGACTCTAAAACTTCTACCAAATGTTATGTGGCAACAGCCACGATATGTTTAGATACACAGTGGAAAACT ACGGTGAGCCAAAATCACGGTGGACAGAAGTAGCTTCTCTTAGCTTTTGGGGCTGTACTCCGTGATTTTGGATTTATCGT GGTTTTCCACCTGTATCCAAACACGCACAATCTTGACCTATTGATTTCTTGTTAACGTAAGCATCTGCGAGCTAAAAATG ATTGATATATCTATTAAATTTTAAATCCCATATGTGGCTTGGTGGCAGTGAGCAGGAGTTACATATGGGCTTATGCTTGC TTCCAGTTTGCATTTGTCATCCTGCTTGCTCATGTATTCTATTCTATAGTAAGATTATCCTCTTTATGTTGTGCTTGTCA TGTTTCTTCATTTCAATTTAATGGAGGTGTCACTTTGGGAGCAAAAGTATAAATATATCTTAACACACTTCTATTTCTAC TTGTAGCTTAATGTTAACGCGATTCTATCGGTCATTCTTTCGTCAATCAGTGGATTTGGGATTTCAATCAGTATGAACTC TCTCCTAATGGAATCTATTAAATGGAGAACGAGTAGGCAGATTCAATCTTCGAATCAGAATGTTAACACGTCGCAGCAGC AGCGCCAGGATCATGCCCCACGGCATCAAGAACCTCAAAGACAGCATCCTCAGCTGCAAATGTTGTAGCAAGAGCAGCAC CAATGACAGCAGACCAGTCTTTCACATCTATGAAGAATTGTGTTGTTTCAGTAACGTATTTTTTACACAAGCTTTTTTTT TTCCTACCGAGGTTGGCATTTCACTTGGTTTTGTATCAAAATATTTCAATCCCACATGAGCAGCTATGTGAAAACTGCAG GCAGTGTAGGAACGTTTTGTTAAATATATTTAGAGTGGAAACTTTTATGTGCTTACAATATATGGTTCTCTTACATCTTA AGGCACCGTTCCAAGTTAAGAGGAATCATACTGTAGATTGGATTTTTTTTTTCTATTGTATTTAAATGGGGTATCATGTA AGGACCATAGGTTTTGGTAGGGTGATGCCATTGTCTCCTAAACTCTAATTATTTAGAGTAGCTGAAATTGCTGTTCTATT AATCAATGTTTTACCTTTATTTTGAGTTCATTTTCTGTTGAATTCCATCACATGGGGCTGTTTACTCATGAGTCAAGCCT TGATTACAAAGGTATAGACGTATATGCCGTTCATAATATAGTTATCGACACTAGATCATATTTTGAAGCATTAGACCTAG TGAAGGATATGTTTGGATATTGTGGTGGATACCCAAATAGATTAGTTTTGAGGATGGGTGAAGCAAATGAAAGGGATGCA TTAAAAATGGTAGGTTGTGTTGTAAGAAGCAATACTAAAGTGAAAAACTGGGGATGATTAAATTTGAATTTATACATAAT GAAAATAAAAAAAATGAAGAAATGTGATTAGATGCATGTG
CDS sequence (LotjaGi6g1v0029400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGCAGGTGCTGAAGTTCAAAATGATGCTTCTAGTTCAATGGTGTCTGCAGATCTTGCTCTTCTTCATCACCA GACATGTGGTGGAAATGGAGAAGATGACCAAACCTCCTTGATTGCTCAGTCCAGAAAACCTAGTCTGTCTTCTCTGCAAA TACCAGCAAGGTCAATAGAAAGTGCATTATCTTCTTTTACTAGGACAGATGGTCCCACATTGTCAAGTCCAGGTTCCACT AGAGGACTTCCCCCAAGGCCAAATTCTGCAAAAGTCAAGTCCTCTATGAGAAATTTACTTTCGGCGAGGAGCTTTCGGGC GAAAACTAGTTCACAAGATTGTGAAAGGAAAGTTCTTATTGTTCCTGACACTTTGCCATCAGATGGCGGTGCTCTGGATC ATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGGTTGTGTTCCCTGCATCAACAAAAGCAGCACATTCGTTGCCG GTTACTCCAAGTGAAAATTCAGGTGGAGAGAATGTAGATGGAAGACATCCAAGGAGTGATTCTGATTTTAGTAAAATGAA AGTTAATCAACATATGACTCGATCATTTTCAGTTCCGGTTAATGTTCAAACCACTATTTCAAAGCCTACAGATTCTAGGC GCCTGATTCGTGTAATTTCAGCTAGACCAAATCTACCAACTATTGATGACATTTCAAGTCACAATACTTCAGTTTCAGAT ATTGTCATTGAAGATGCTTCTGAGGATATTCCTGAGGAAGAAGCAGTCTGTAGGATTTGTTTTGTAGAGCTTGGGGAAGG AGGGAATACTCTTAGGATGGATTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTA GTATCAAAGGAAATAAGACCTGTGATGTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACGCTCTTGAAAATTTCTAAT CCTGTAACTGTTGCTTGGCAGCCATTGAATGTACCACAGCAGAGAGAAGTTACTTCCTACAGGATCTGGCAGGATGTACC AGTACTCGTCTTGGTCAGCATGCTGGCATACTTTTGCTTTCTAGAGGAACTATTGGTTTCTGATTTGGGCTCTCGCGCTC TTGCCATTTCATTACCTTTCTCCTGCGTTTTAGGAATCCTTTCATCTATGATTGCATCAGCCATGGTGAGCAGGAGTTAC ATATGGGCTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGCTTGCTCATGTATTCTATTCTATACTTAATGTTAACGC GATTCTATCGGTCATTCTTTCGTCAATCAGTGGATTTGGGATTTCAATCAGTATGAACTCTCTCCTAATGGAATCTATTA AATGGAGAACGAGTAGGCAGATTCAATCTTCGAATCAGAATGTTAACACGTCGCAGCAGCAGCGCCAGGATCATGCCCCA CGGCATCAAGAACCTCAAAGACAGCATCCTCAGCTGCAAATGTTGTAG
Protein sequence (LotjaGi6g1v0029400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKAGAEVQNDASSSMVSADLALLHHQTCGGNGEDDQTSLIAQSRKPSLSSLQIPARSIESALSSFTRTDGPTLSSPGST RGLPPRPNSAKVKSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGALDHKPSTSRSLSLNKVVFPASTKAAHSLP VTPSENSGGENVDGRHPRSDSDFSKMKVNQHMTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSD IVIEDASEDIPEEEAVCRICFVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISN PVTVAWQPLNVPQQREVTSYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCVLGILSSMIASAMVSRSY IWAYACFQFAFVILLAHVFYSILNVNAILSVILSSISGFGISISMNSLLMESIKWRTSRQIQSSNQNVNTSQQQRQDHAP RHQEPQRQHPQLQML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 341 | 341 | - | – | |
| MobiDBLite | 27 | 95 | 69 | - | – | |
| MobiDBLite | 31 | 83 | 53 | - | – | |
| PANTHER | 33 | 488 | 456 | 2.4E-211 | – | |
| PANTHER | 33 | 488 | 456 | 2.4E-211 | – | |
| MobiDBLite | 155 | 183 | 29 | - | – | |
| Gene3D | 243 | 313 | 71 | 5.8E-16 | ||
| ProSiteProfiles | 249 | 311 | 63 | 19.204 | ||
| SUPERFAMILY | 253 | 308 | 56 | 1.48E-13 | – | |
| SMART | 256 | 305 | 50 | 1.8E-18 | ||
| CDD | 257 | 305 | 49 | 1.86884E-14 | – | |
| Pfam | 257 | 304 | 48 | 1.9E-11 | ||
| Phobius | 342 | 361 | 20 | - | – | |
| CDD | 348 | 451 | 104 | 0.00845028 | – | |
| Phobius | 362 | 372 | 11 | - | – | |
| Phobius | 373 | 394 | 22 | - | – | |
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 395 | 400 | 6 | - | – | |
| TMHMM | 401 | 423 | 23 | - | – | |
| Phobius | 401 | 422 | 22 | - | – | |
| Phobius | 423 | 427 | 5 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| Phobius | 428 | 449 | 22 | - | – | |
| Phobius | 450 | 495 | 46 | - | – | |
| MobiDBLite | 464 | 495 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0029400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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