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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0099800 |
Transcript ID | LotjaGi6g1v0099800.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21672782..21674244) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCAAGAACAGTTACCAAAGACATTATCACCCTTCGTGGTTCCGCATCAATCGTCAGCGAGTTCTTCGGTACACA CTTCTCCTCACATCCCTCTTTTCTCCAATTTCTTTGATTTTTCCACAATTCGGAAGTCTGATTTTCAATTTTGATTTTGT TTTTCAATCAGGATATGCAGCCAACAGGTTTGATTTGATTTGATCCTCTGAGTTCATCATTGTTCTGATTTTGTGGCTTG AAACTTTGTTGTTGTGATAATACTAACATGTGACTTGGAAATTTGTTCAGCATCCTTTACAACCGTGGAGTTTATCCAGA AGAGAGCTTTGTGAAGGTGAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCA ATCTAACTGCTCAACTCTCTGGTAATTTTAAGTCCCCTAATTTGTTACGACTATCGCGTTTCTCGGTTTCATCTTTCAGA GTAACTTTTTTTTATATAGGCAAATGTTAGTTGTTAGTAAATTAGTACAAATTATCTGTCGTCGGCCCTGGCCCTCCATC TAGTATATGTAATTGGGAATCTTAGTGTTTATTTTGAAAGAATGGTGCTGAATTTGAATCATGTTTAAGATTTTAGTTCA TTTCCTTATCTTGCTGTTAATGCTTTTGATTACCTACTCTCAACTTGATATTAATTAGTAGTTAAATTGTGATATTATTA TTGACCATTGCTGATGATTGAACTGTCTGAATTTTGTATGTTGAAAAGAATGGCTTGAATCTGGCAAGTTACAGAGGGTT GTCCTTGTTATAATGAGCAAGGCCACAGGTGAAGTCCTTGAAAGGTGGAACTTTAGCATTGAGACTGATAGTGAGGTTGT TGAGAAGAGGTGGGTCAACTTGGCATAACCAAAATCCCAGTGTAAATTTTTCCTTCATAATTTTCTCCTTTGATTAATAA TGATTTTAATTTTAATTCTTCTAATTTTTCAGTGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGC GATTATGAGGCAGATTGCTTCAAGTATCACCTATTTGCCATGCCTGGATGAATCTTGTAAGAACTATGGCTGTCTTGTTT TTGTTTCTTCTTCTTCTTCTTCTTTGTTTTATTCTTGATTTATCTCCTATCTCTAAACATGGCTTTCTTATTCCAGGTGT TTTTGATGTGTTAGCATACACTGATACAGATGTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAA ATCCGCAAATGGTGAAATTGCATTCCTTCGATACTAAGGTGAATTTGGATTTACAGTTTGGTTGTTTATCTTACTACCAG GATTTGGTTAATTTGGCCATGACCAATCGGTTGTTTTGGCTTGCAGATTCACAAGGTTGACACACTTGTATCATACAAGA ATGACGAATGGGACGAGCAGTAG
CDS sequence (LotjaGi6g1v0099800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCAATCTAACTGCTCAACTCTCTGAATGGCTTGAATCTGG CAAGTTACAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACAGGTGAAGTCCTTGAAAGGTGGAACTTTAGCATTGAGA CTGATAGTGAGGTTGTTGAGAAGAGTGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGCGATTATG AGGCAGATTGCTTCAAGTATCACCTATTTGCCATGCCTGGATGAATCTTGTGTTTTTGATGTGTTAGCATACACTGATAC AGATGTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAAATCCGCAAATGGTGAAATTGCATTCCT TCGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGACGAGCAGTAG
Protein sequence (LotjaGi6g1v0099800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLTEDEGVKSFISNLTAQLSEWLESGKLQRVVLVIMSKATGEVLERWNFSIETDSEVVEKSVSREKSDKEIMREIQAIM RQIASSITYLPCLDESCVFDVLAYTDTDVAVPFTWIESDPKLIENPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 150 | 150 | 5.4E-78 | – | |
ProSiteProfiles | 1 | 145 | 145 | 31.711 | ||
PANTHER | 1 | 150 | 150 | 5.4E-78 | ||
Gene3D | 1 | 152 | 152 | 3.7E-52 | ||
SUPERFAMILY | 2 | 151 | 150 | 1.83E-42 | ||
Pfam | 7 | 139 | 133 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Mitotic spindle assembly checkpoint | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. |
Expression pattern of LotjaGi6g1v0099800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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