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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0136100 |
| Transcript ID | LotjaGi6g1v0136100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT5G56130.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9FKT5|THOC3_ARATH THO complex subunit 3; TrEMBL-Plants: tr|V7BL70|V7BL70_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0136100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39213689..39221168) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCACCAAACTCAATTCCCTGAATTTCCTAGGTAGAATCAAACACAGTGGTTACAACAATCACAGTGTTTTCTACTTG AACCTCACAAAAGTGCCCTCAGATTCGTTCCTTGCAACCATGGAGGAACAAACCCCATTTAAGAATCTCCATAGCAGAGA GTATTCTGGTCACAAGAAGAAGGTACCCTTTTGCTTCCTTTCTCTTTCATGGTAAAACGCGTTCAAAGTTCGAAACTTTT TGTGCTTGAATGCTTCAGTTCATGTGAAAAACAAGCCCTTTATCAATGTTTATGTTTCAATTCTGATATGGGTGTTTTTT TTTTTTTGTTTGCTTTCAAATAGGTGCACTCTGTGGCCTGGAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGAT CAAACTGCTCGAATCTGGCATGTTGAGCAACATGGGCATGTAAGTTTACTCCTAATAGCTCTTGGAAGAACAGGAGCTGA GCAAGTTCATATCTTTTTTTCCCCTTTGTTTGATTGTCATGATTGATTTAAATGGGACTGTTTCATTTCATGGATTAGGA GACAGAAGCTATTTATGTTAGCCTTGGTCTTAGGGTTGTCTTTTAATTTGTTCTTCCTGAATAGGACTTGTGGGCTAATA GAATAATCATGACAAGCTACATAGAGATAGTTCATTTGATTAGGAAAGCATAGGTTAATTTTCCTTAAGTCTTTCAACTT TTTTTCTTAAGGGTGTGTTTCAGAGTTTTTAGGGGAGGGGAGGGGAAGGCTATGAAGGGACGGGGAGGAGAGGGCAAGAG AGGGGGAATCGGAGTAAGCCCTTCCCTTGTTTGGAAGTTCCAAATTGCCCAAAACCCCCAGATTTGGGGGAACTAATGAA TACAACTAAAAGAGGATTTTGGAGGGTTTTCAGAAATACCCCGAAGTCTTCTCCCCTATTTTAAAATCTCTCAAACAGGG GAAGGGCTTCTCATAAGCCTCCAAAACTCAACTCACAAACACACCCTAAGAAATGTTGTAGGTTTGCTGTTTGTAAAAGG TTTAAGTTCCCCTCACGTATTGATATCTTGTTTAAGATTTGCCCCTTTGAAATCACCGAGGAAATTTTAAGTAATGTCTT TTATAACTTTTGGTGGTTTAGATAACAACATGACGTCTATCTAAAAGATTTTATTTGGCCTTGGGTAAAATATGTTCTTT CACATATGATTTTAATACTTCAAACTTTTTGAATGCGACTTAACCAAGGGTTAATCCTTACTCCTTAGAACCTGTTGGGA AAAGAAGAGTAAAACTTAGGATAATATAGACATGCAGCCAGGGCCCAGGGTAGGAGAAGGGCTAGGGGTCAGTTGAGATC AGTATCTAAGAATCACCACTCTTTGGTTACCTTCCCTGATACATAATGACAGTAACCAGAGGATGTTTCTATTAGAATTC GGACTTGTTAGATTAAGTCAAGAAATGCATTGCAAATTATATATGATCAGAAAGAAAATTGTTGTTGAAGCTAGAGTGAA CTAGTGTCAATTGTGAATTTTTCGACAGGAACCTTTCCAGTTATGAAACTTTAGGCTACTATAAAGGGATTTTGGGGTGG AGGGGTGTGTTGGGAAGCTGAAGCCCAAAGGCACCTTTTTGCTCAAAGTTTCTCTTTCAGTATTGGCTGCTACTATTATG TTATTGTAGATTGTTTTGTTCTTCTGACGTGGTTAGAATTTGATTGTTTCATTTTATATGTGGGACGGGGTTGGCTGGGG GTTTATTATAGGGTAAAGTCAAAGATATTGAATTAAAAGGCCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAA CATGCCGATCTGATTGCGACTGCATCGGGTGACAAGACCGTTCGTTTGTGGGATGCTCGTAGTAAGTGAAAATCCATTTG TTACAATTTAATTATTATTCATATCAGAAGGAAGAAGTTATGACCTTTTATATTTTGGGAGACTTGTAATGAATTGTACA GTTATATTATCTTAATGCCGGTCACAATTAACCATATGCTCATTGGAATAAGCAAACGATTGGTTTCTTTGTTTGAAAAT GTTTTCCACATCTTAGATCAATGCTTTTGTTGATGATTCATTGAAAAAGAAAGTTAACTGTAAATATTTATTATCGTTTG GAGGTCCAAAGAAGGGGCTTGTGGAAAAGCTACTCATATTTGATTTCTGCAGGTGGAAAATGCTCACAACAGGCAGAACT TAGTGGGGAGAATATCAACATTACCTACAAACCTGATGGGACTCATGTAGCTGTGGGCAATAGGGTATGTTACACAATTG CTTCATTTGCTTAAAGCTCCGAGTATTGTGACTGTATGTGTTAAGATCAAACTATATTCTCTTGCTGTTTTTCATCATAT GAAGTCTTATGCGGTTTTGTTTTCCACAGGATGATGAATTAACAATACTGGATGTTAGGAAGTTCAAACCAATTCATAAG CGCAAATTCAACTATGAGGTATTAACTAGTTTTAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTATTAAC TAGTTTACACTTCATTCTTGCTGATTTTTCTGTTTTCGTCAGTTTGTTAAGTCTTATTTTTAGGCTGAGGAATGAACTTA TGAGGAACTTGTCTTTACACCACATTCTTATAATGTACATAAAAATGTGAATTTGCTATACGCTAATTGGTTTTCTTTTT TTACAAACCACACAACTGTTTTCAGAAGTTTGAATTGGAATTCGCAGTCTGATAAAGGGCTTATTAGTTGGAGTGTAAAT TGCATATTGTTTTATAATCAATATAAATTTGTGGTCAATTGGAAGAACTAAATGTCCTAGTATCAAACCATCAGATAACC ATGAATATCATGTTTGTATTCTGTTAGAGAATTCTTGTATGCCTGTTTGAGCCAACATGTCAAATAGTTATGTTCTGCCT TGGAATGTGTGTTTTCACATTGAAGCATTTTTCCAAACAGGCTAGAATTTGCATGTTTAAGTTTTTTTACTTCCATATTG GTCGAGTATGAACAATTTCAGTTTCCATGCTTTGAAACCTGACGCGTCTGTTAAAAACAGAAAGAAGCCGAAGAGCATTG TTTTTACTTACAATTAATGGTAAATCTGAGAAACATTTCTTGTTTTTTTTATCACAATATTGTACGCAGGACACACATTA CAATGATTGAACTGGATCCCTAAACATTAGGGATGAAAATTTTGAAAAATGGAAAGTATGCTTAATTAACTTTCAATGGT AAGTGTATCACGAATATAAGGAGGAATCACAATTACAATCATAATCAACACTACAACCCCAGCAATGCAAGTTATGATGA GTCACCCTATGTAGATAATATGGGTTACTAAATATATGCAAAATATAAAAAAATCAAGTGAACGGTCTCTTTGACTGTAC AATTCTTTGGTATTGTCTACATGATGCTTCTGCTGCGAGACACTCACCCTCACTTTCTACACCACCTGTGTTTTCTGGTT CTTAGATCTTGTTTTATTCTCTCCTGGCATTCATATCCCCTGCCGTTTCAAACATCATTATTTATGACGCTCTTTTGAAG CTCATTTGCTCATCAACTTTAAACATATGCCGGATCTTTTCAGATTTCAGAAATGTCCATCTATGATTTCATAGGTTTAA AGCGTAATAGTGTACTGCCTGCAGTTTAGTTGTATGGTTGATATGAAGTTGATAACAGACATGGATTTAACTTTAACTAT TTAGGCGGCTGACATTTTATGAACTCTTTTGAGATGAATAATGTTTTTTACTCAGTGACTTCCGTATTTTTTCCTAGGTA AATGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTTCTAACTACAGGAAATGGTGAGGTCATTGTTTGACTTTGCAC TTTGTAAATAATTAATATCAACTCAATACATTTTGTTTCAATGACTTTGTTTAAGGTAGAAAAAATATCTTATATTTTAT TTACATGCTCACTTAGGGACTGTGGAAGTACTGACGTACCCATCTCTTCGACCTCTTGAAACCCTCATGGCTCATACAGC CGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGGTATGTTTCTAGTGTTTGTTGTTTCTGGTCTTGCAAATTGCATT TGTATTAGCTAGGTAGGAAACGAATGTGCAATCTCTACTGATGCATTTTTATTTTATGCCTTCTTTCCTCCAATCTTCAT TGTTAATATAAAAAAGTATATATAGAAATAACAGAATAGATATCCTTGTGCTATTGAAACAGATATTTTGCTGTTGGAAG TGCTGATTCCCTTGTCAGCCTGTGGGATATCTCACAGATGCTCTGTGTGCGCACCTTTACAAAGCTGGAGTAGGTTTATC TTGGCTTCCATGTTTGTGTATTCAGCTTTTGATTTTCAGGTATATTGATTGTATTGATTGTATTAAGCTCCTTCTGACCA ATATGGAATGTTATGCTTCTCAGATGGCCTGTCCGTACAATCAGTTTCAATCATACTGGGGAACTTATTGCTTCAGCAAG TGAAGACTTGTTCATTGATATTGTAAGTTATACATATCAATTTTTTATAACAGCAATGTTATATGTTACGGAGGAAAATC TTAAGAAATGCTGATGTGGCAAAGCTTAAATTGTTATTTGACAGAAATCGTGGGGTAGTGATAAGTGATAACTACCACTT ACTTGTTGGGTTTCTTATCGTAACTTTTTAGTGTTTTCCTTTTTCTATTTTTTTTTTTCTATCAGTCTCAGTTATCCATC AAATATAATTTCCATAACGAATGATATTAAAAGCTTGCTACTTTATGCAACAGTCTAATGTTCAAACTGGACGAACAGTG CATCAGATTCCTTGTAGAGCTGCCATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGA CAAAAACAAGTATCAGGCTGATGAAGGTATATGTTTTTAGCGCCTGCAAAGTGTTTATTACAAACATAAGAATCATGCGG CTGCAATTAACTCCTATGCATTTTCGTTGCAGGTGTTTTTCGAATTTTCGGTTTTGAAAATGCTTAGCATTGGCAGACCT GCCATTTTTACCTTAGTTGCTTGCAAACAAGGAAGAAAAGACTCTTGTTGCTTATCTGAATCTCTTACTGGTTGCAAGGA CTGATCCCCTGGAGTTTGATTTGTAATCGGAATTAGATCATTTTTGTATTTAAAGCTTTTTTTCTCTGTTTTTATGGTAA TCGGATGTTTGATTTAAGTGGGAGAGCTAGCTAGCCTTAAGCAGTCTTTGGTATGAGAGACTTGTGTATGGAAAAAAACT CTATTGCCCCACAAGGATGTGGATGTGCTCGAATAGTACTGCCGATGGAGGATACTTGTTTTATATACAAAATGATAACA CTTGCTGCTCAAAAATTGTCTAAAGTGGCTAGATATTTTGCAAGGGAAGAAATATCTTGAAAAGACATATTTTCCTGTCT TCTCATTATGTCTCAGAATCTCAGAATCTTTGCTTTAGAATGTAACTTATTGTAAATTTGAGAAGGGCTTGTGTTTCCCA TTTCAGTTCAAATATTGTCAATTCCAGAAGGATTTGCATGACTCAGTTTCAATTCAATTTCAGCAGGATGTCTCGGTTTC AATTCAAATATTGCTTGCTTAGATTTATTTGGAAAATACCTTTGAGTAAATGACATTTAGTTCATAAGATATTCAATAAT GTGATGAAGAAAAATTGCTCTAAACTTGCTACAACTCTTGCAAGAGAAGAAGAAACCAGCCAAGTTATATTGTTTTGGCG CTTCCTAGATACTTCCATCCAAATTTTGTTTTGTCTCAACAATACACAAAAAGAAATACAAGTGCTAAATATGAATAGTA GCTTTTATTTCATGAGAAATTCCAAAAAATTGTAGCATCAAAATTGCAGCAGCTCTCAGTGTAAACTGCATAACAGACTT CACAAAATTGTGGGCATCAAGAGCACACAAGAGGTGTGTTGCTTCAGAACAGAATTAGGCTCTTGAAGGAATCTCCAGTC CCAATGACATCCTCATCAACTACTCATCAAGTCCCAGCAACACAATCATCAATGAAATCTTCTGAGTTAAGAACTTGAAA ACCTTGTACAGAAAAAACCAAAATGATGATGTCTCTCCTGTCTCCCATATAGTCCTTCCTTGTGTAGAAACCTTGTATAG AAAAAACAAAATGATGATGGTCCTTATGACACCTGCTCCAGCCTCATGACTTGCCAAATTTGAAGTTTTCAGCAAACTCT AAGGCCAATTTTGATAGCAGATCTCTTATTGAGGTTGAGATTCAAAAGGGTTAGTCTAATCTATCGGACCAAAAATGCTT CATTCCTTGGTAGAGGCTGAAAGTGCAAGAGAAAATCACCATTAAGCCAAAACTTACAAACAAATTGCATAAATGCCAAA ACTTACAAACAAATTGCATAAATGAAGAGAAACAAGAAAAGATCTGATCAGAGAAATCATTACCACAATCAGTCCCTCAA CCAATTCCAAATCCATGCTTCACTGAAGAGCCAATCGACCATCATCATAAGCCGCAGAGAACAAACTTGGAAACAGGAAA AGCCAAACCTGTAAAGTAAACAAGACAAAAAGTAAGCAAATTATGAGAACACCAAGTAACTGGCTTCCATTTGATCTCAA CACTTGAGCTCTTCATCCTCTTCCCACTCTGAGGCTCCTTAGAAAGATCAAAACTCGCCCCTTTCATCCTCAACTCCTGA ATACACCTCGTCACCGCCCTTCCATCATTCCTCTCCCTCTGCAACTGCTCCCACACCTTCCAGTACCCATGCACCTTCAC CTGAACCAGAAACACAAACACAAGCGAAGTGCAAAGTGACACCATGGAAGGAATCCACCACTTTTTGCAAACACTGTGGT GTTGGTCTGGGTGGTTCTGTTCACTGGTCCAGGAAGTGAACAAGAGGGTGAAGAAGAAGCCATGGAAGATGAAGAAGAAG GAACAGAGTTGGAAGAGTTCAGCTTTGACAGAGTCCATTCTGGTTTCTTTGCGCGCAATGCGTTTGGCGAAGAGATCCTC TTCTCTCTGCCATAGCTTCAGGAGCAAGAGGTGACCGGGGCTTTCGGAGATTTCGGTTAAAGGGTGGTCATCAATGGCCT CAAACATGTTGGTGGTGGTCATGGAACACAAGTGGTGCTTGTGTTCTTGGTCCACAGGGATTTCAACTATGTGGGTGTCT CTTGTTTCCGCCATTGAATCAAAAGCTAAGAATGAATTGAAATGAAAATGAATAGAACTAAACACAGAAGAATGAATTGC AGTTAACGCAGAGAAGAGAGATTGAGAATTTGTTGTTGTTGCAGAAAGAAGACAGAGAAATGTAAACGTTGTTGAGAGAG AGAGAAACATGTGTGACATAAATACCATTTCAATGCCAAC
CDS sequence (LotjaGi6g1v0136100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAACAAACCCCATTTAAGAATCTCCATAGCAGAGAGTATTCTGGTCACAAGAAGAAGGTGCACTCTGTGGCCTG GAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGATCAAACTGCTCGAATCTGGCATGTTGAGCAACATGGGCATG GTAAAGTCAAAGATATTGAATTAAAAGGCCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAACATGCCGATCTG ATTGCGACTGCATCGGGTGACAAGACCGTTCGTTTGTGGGATGCTCGTAGTGGAAAATGCTCACAACAGGCAGAACTTAG TGGGGAGAATATCAACATTACCTACAAACCTGATGGGACTCATGTAGCTGTGGGCAATAGGGATGATGAATTAACAATAC TGGATGTTAGGAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTAAATGAGATTGCTTGGAACATGACAGGC GAGATGTTCTTTCTAACTACAGGAAATGGGACTGTGGAAGTACTGACGTACCCATCTCTTCGACCTCTTGAAACCCTCAT GGCTCATACAGCCGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTG TCAGCCTGTGGGATATCTCACAGATGCTCTGTGTGCGCACCTTTACAAAGCTGGAATGGCCTGTCCGTACAATCAGTTTC AATCATACTGGGGAACTTATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCTAATGTTCAAACTGGACGAACAGT GCATCAGATTCCTTGTAGAGCTGCCATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATG ACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTCGGTTTTGAAAATGCTTAG
Protein sequence (LotjaGi6g1v0136100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQTPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIELKGHTDSVDQLCWDPKHADL IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTG EMFFLTTGNGTVEVLTYPSLRPLETLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISF NHTGELIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 312 | 310 | 9.8E-139 | ||
| Gene3D | 3 | 177 | 175 | 1.5E-35 | ||
| SMART | 8 | 47 | 40 | 8.6E-7 | ||
| SUPERFAMILY | 9 | 295 | 287 | 8.93E-61 | ||
| CDD | 11 | 295 | 285 | 1.21128E-43 | – | |
| Pfam | 12 | 46 | 35 | 5.3E-6 | ||
| ProSiteProfiles | 15 | 269 | 255 | 29.609 | ||
| ProSiteProfiles | 15 | 49 | 35 | 12.781 | ||
| PRINTS | 34 | 48 | 15 | 2.3E-7 | ||
| SMART | 54 | 94 | 41 | 4.9E-8 | ||
| Pfam | 60 | 94 | 35 | 1.1E-4 | ||
| ProSiteProfiles | 61 | 103 | 43 | 15.521 | ||
| PRINTS | 81 | 95 | 15 | 2.3E-7 | ||
| ProSitePatterns | 81 | 95 | 15 | - | ||
| SMART | 138 | 176 | 39 | 100.0 | ||
| Gene3D | 178 | 304 | 127 | 1.4E-24 | ||
| SMART | 179 | 218 | 40 | 7.7E-9 | ||
| Pfam | 182 | 218 | 37 | 7.4E-4 | ||
| ProSiteProfiles | 186 | 227 | 42 | 12.915 | ||
| PRINTS | 205 | 219 | 15 | 2.3E-7 | ||
| SMART | 221 | 260 | 40 | 2.1 | ||
| Pfam | 233 | 282 | 50 | 8.8E-5 | ||
| SMART | 263 | 301 | 39 | 89.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | MRNA export from nucleus | The directed movement of mRNA from the nucleus to the cytoplasm. |
Expression pattern of LotjaGi6g1v0136100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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