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LotjaGi6g1v0177100.2

Overview

Field Value
Gene ID LotjaGi6g1v0177100
Transcript ID LotjaGi6g1v0177100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:46905131..46908042) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTGGTGTTCTTCTTTGGGTGAATTGTGGAACCAAAGGGAACTCCATCTCCTTGCTAGGCCTTGGAGGCAGAGGAAG CAGAAGCCAGAGGAGGTATAGACTGTGCAGTGGCATCAGCTTTGCAAGCTTCTCCAGTGCAGTTGCAGAGCCTTCAAGAT CCTCAGAGGAGAGGGTCTATGAAGTGGTGCTGAAGCAAGCAGCACTGGTCAAGGAGCAGAAAAGAGATACAAAGAGAAAA TTGAATTTGGATAAGCCCATTGAAGATGATTTCACCAATAAGGATCTGTTGAGTGGTGCTTATGATAGGTGTGGTGAAGT TTGTGCTGAGTATGCCAAGACATTTTATCTGGGTACACACTCTTTTTCTCTTCTCTTTTCACTGTCTCTTGTTCCAACTT CCAATGATTTTAAGTGCATTTTTAAGTTCATTATTATATCAGTTCCATATTAGTTAATTGCTTTAAACTAATACCTTCAC ACTTTTCAGTTCTCTTCCTTTTTGGTTGGTTCTAGAGGAATATTTAATTAAGATAATAGAGGGATCTCTTTTTACTCACC TTTGCTCATTGCATCATGCCTAAATAATGTGTTCATTTTGTTGCAAAATGTTACTTCAGTTGTTTAATAATTGACTTTTT TGGAGACTATCCTTTATTGGTTTCTTAGCATATGTTGTTGTTAATTTGATTGGTTCCTTCAATTGTGAATCTCAGGGACA CAATTGATGACAGAAGAGCGCAGAAAAGCCATCTGGGCCATTTATGGTATGTGCAATTAGTATTAATATATGACCCTCAA ATGGCCTTCCATAACAGCTCCTCTAATGAGGGTTGTGGTGTTTTTTTCTTATTTTGTTTTTGAAACTGATTACTCTTTGT GCATTGCAGTGTGGTGCAGAAGAACAGATGAGTTGGTGGATGGCCCTAACTCTCCACACATCACCCCCAAGGCCTTGGAC AGGTGGGAGCAAAGATTAAGTGATGTTTTTGAAGGCCGTCCTTATGACATGTATGATGCTGCCCTTTCAGATACAGTTAC AAAGTACCCCGTTGATATACAGGTAAACCTCATGCTCTTAACTGGAGTCTGAAACTAAACCTTCTAGCATTCCTTGTTTG ATATAATAAGGTGATGGTGCTCAAAGCCACACACATGTGAGGACATTGTCTTAAAACATGAGCTCTTGAGATAAAAAACC TTGAATGGAATTCATACGGAGAAGTCTTAAATTGACTAGAGACAAGACATTTACATCAATCCGTACCTCTAAGCTTGCTT TTGGGTAGAGCTAACCCAAACTCGAATCGTAATATACTAATATTGTATTAGAGTCTATCATATATCTGTTTATTGGTCCA CATATAAATGGGTCAACCAGAGATATCCAATCCTGCAAACTTCACACTTCATACGTCCAAGCGTGTGAGGGGTTTGTGTG GAGAGGTTCCAGATTAATTATAGATAAGGTCAAATAAGTCCTTATTAAGGGTAGAGTAATCCTCACCTTTTAACTTCGTT TTTCGGGTACAGCTAGGTCTACCCGAGGAATTCAGATGTTGTAATGACTGTGTTGCCCAACAAGACCAGTGTTTGAACTA TGAGACAGTGAAATTAGTGTACTTAATATTCAACTATATAAAAATTATTTAGCGACAATAGAGGGTTCACATTTTTTATG TGCTAAACTGATCCTATTTTACATTGAACTGTCTGTGAATAGCCTTTCAAGGACATGATCGAAGGGATGAGGTTGGACCT GAGAAAGTCAAGATACAATAACTTTGATGAACTCTACCTTTACTGCTACTATGTTGCCGGGACTGTGGGCCTTATGAGTG TTCCAGTAATGGGGATAGCACCAGAATCAAAGGCTTCCGCAGAGAGTGTCTACAATGCTGCATTGGCACTTGGCATTGCA AATCAACTCACCAACATTCTCAGAGACGTTGGAGAAGAGTAAGTTTCCTTAAATACAACAACAGTGCCATTTTAGCAAAG TTACAAGTACACCTTGTAATATATATAAATTTGACTCTTAAACTTCACACTTAAACCCAATTCCAAAAAAAGAACTAAAA AACTGATGGAAATTATATTAAACTTGACTTAGGATAGCATTGAATTTCAATTGCCTATATAATTTGAGACAGAATCAGGA GGAAATTATATTAAACTTCTCATGAGATTGTTATAGTAGCCTTGTAAAACTATGACTTGTATGAAAAACATTTCATCAAG ATTATGCTTCATCTAATTACTTCTTCTTGTTGAACATTATAGTGCTAGAAGAGGAAGGGTATATCTTCCACAAGATGAAT TGGCAAAAGCTGGCCTATCAGATGAAGACATTTTCAGTGGGAGAGTTACCGACAAGTGGCGAAATTTCATGAAGGGCCAA ATAAGGAGAGCAAGGATGTTTTTTGATGAGGCGGAGAAGGGAGTTTCAGAGCTCAGCTCAGCTAGCAGGTGGCCAGTGTG GGCATCTCTTTTGTTGTATAGGCAGATATTAGATTCTATTGAAGCTAATGACTACAATAACTTCACCAAAAGGGCTTATG TAGGAAAAGCTAAGAAGCTCTTATCACTACCTGCTGCTTATGGAAGAGCAATTCTAGGCCCACAAATGTTGACCAAAATG GTTGCAAGGTGAATATGATATTGTGCCCATAAGAATCAAACAGGCTTGGTTTGAGCTTGTAAGTTCTGTTCAGCAGAATG TATTAATGTGTATATTTTGTAGTCTAATTGTATACATCTCAAGTGAGCAATATTGAAGAGAAATTATTGATTATTAGTTG GCAAGTAAATATTGATCCTGTTCTTCCCATTGCTCTCGCTTCTTGTAGGATACACATGCAACATATAGTAATTAAATGTT GCCCACATTGCAATTCTATAACTAGTTACTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0177100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGTGTTCTTCTTTGGGTGAATTGTGGAACCAAAGGGAACTCCATCTCCTTGCTAGGCCTTGGAGGCAGAGGAAG CAGAAGCCAGAGGAGGTATAGACTGTGCAGTGGCATCAGCTTTGCAAGCTTCTCCAGTGCAGTTGCAGAGCCTTCAAGAT CCTCAGAGGAGAGGGTCTATGAAGTGGTGCTGAAGCAAGCAGCACTGGTCAAGGAGCAGAAAAGAGATACAAAGAGAAAA TTGAATTTGGATAAGCCCATTGAAGATGATTTCACCAATAAGGATCTGTTGAGTGGTGCTTATGATAGGTGTGGTGAAGT TTGTGCTGAGTATGCCAAGACATTTTATCTGGGGACACAATTGATGACAGAAGAGCGCAGAAAAGCCATCTGGGCCATTT ATGTGTGGTGCAGAAGAACAGATGAGTTGGTGGATGGCCCTAACTCTCCACACATCACCCCCAAGGCCTTGGACAGGTGG GAGCAAAGATTAAGTGATGTTTTTGAAGGCCGTCCTTATGACATGTATGATGCTGCCCTTTCAGATACAGTTACAAAGTA CCCCGTTGATATACAGCCTTTCAAGGACATGATCGAAGGGATGAGGTTGGACCTGAGAAAGTCAAGATACAATAACTTTG ATGAACTCTACCTTTACTGCTACTATGTTGCCGGGACTGTGGGCCTTATGAGTGTTCCAGTAATGGGGATAGCACCAGAA TCAAAGGCTTCCGCAGAGAGTGTCTACAATGCTGCATTGGCACTTGGCATTGCAAATCAACTCACCAACATTCTCAGAGA CGTTGGAGAAGATGCTAGAAGAGGAAGGGTATATCTTCCACAAGATGAATTGGCAAAAGCTGGCCTATCAGATGAAGACA TTTTCAGTGGGAGAGTTACCGACAAGTGGCGAAATTTCATGAAGGGCCAAATAAGGAGAGCAAGGATGTTTTTTGATGAG GCGGAGAAGGGAGTTTCAGAGCTCAGCTCAGCTAGCAGGTGGCCAGTGTGGGCATCTCTTTTGTTGTATAGGCAGATATT AGATTCTATTGAAGCTAATGACTACAATAACTTCACCAAAAGGGCTTATGTAGGAAAAGCTAAGAAGCTCTTATCACTAC CTGCTGCTTATGGAAGAGCAATTCTAGGCCCACAAATGTTGACCAAAATGGTTGCAAGTTACTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0177100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGVLLWVNCGTKGNSISLLGLGGRGSRSQRRYRLCSGISFASFSSAVAEPSRSSEERVYEVVLKQAALVKEQKRDTKRK LNLDKPIEDDFTNKDLLSGAYDRCGEVCAEYAKTFYLGTQLMTEERRKAIWAIYVWCRRTDELVDGPNSPHITPKALDRW EQRLSDVFEGRPYDMYDAALSDTVTKYPVDIQPFKDMIEGMRLDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPE SKASAESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAKAGLSDEDIFSGRVTDKWRNFMKGQIRRARMFFDE AEKGVSELSSASRWPVWASLLLYRQILDSIEANDYNNFTKRAYVGKAKKLLSLPAAYGRAILGPQMLTKMVASY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 215 215 - –
PANTHER
PTHR31480
32 389 358 1.1E-224 –
PANTHER
PTHR31480:SF20
32 389 358 1.1E-224 –
Gene3D
G3DSA:1.10.600.10
89 373 285 1.7E-102
IPR008949
SFLD
SFLDG01212
99 379 281 0.0 –
SFLD
SFLDS00005
99 379 281 0.0 –
SUPERFAMILY
SSF48576
100 381 282 3.12E-92
IPR008949
CDD
cd00683
102 369 268 5.30974E-112
IPR033904
Pfam
PF00494
111 366 256 7.8E-72 –
Phobius
TRANSMEMBRANE
216 238 23 - –
ProSitePatterns
PS01044
219 234 16 -
IPR019845
Phobius
NON_CYTOPLASMIC_DOMAIN
239 394 156 - –
ProSitePatterns
PS01045
255 280 26 -
IPR019845

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004310
Molecular function Farnesyl-diphosphate farnesyltransferase activity Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate.
Subterm of
GO:0016765
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
Subterm of
GO:0051996
Molecular function Squalene synthase activity Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0177100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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