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cd00683

Source: CDD

Description

Trans_IPPS_HH

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004310
Molecular function Farnesyl-diphosphate farnesyltransferase activity Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate.
Subterm of
GO:0051996
Molecular function Squalene synthase activity Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate.
Subterm of

Associated Lotus transcripts 13

Transcript Name Description Predicted domains Domain count
Lj0g3v0184729.1
– PREDICTED: phytoene synthase, chloroplastic-like [Glycine max] gi|356526962|ref|XP_003532084.1|
Domains
16
Lj0g3v0184729.2
– PREDICTED: phytoene synthase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502178716|ref|XP_004516319.1|
Domains
15
Lj0g3v0278879.2
– PREDICTED: phytoene synthase, chloroplastic-like [Cicer arietinum] gi|502135077|ref|XP_004502211.1|
Domains
15
Lj2g3v2507910.1
– PREDICTED: LOW QUALITY PROTEIN: phytoene synthase, chloroplastic-like [Glycine max] gi|356553225|ref|XP_003544958.1|
Domains
14
Lj3g3v3386550.1
– Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1|
Domains
18
Lj3g3v3386560.1
– Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1|
Domains
18
LotjaGi1g1v0100600.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600
Domains
17
LotjaGi1g1v0100600.2
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600
Domains
17
LotjaGi3g1v0513800.1
– Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800
Domains
20
LotjaGi3g1v0513800.2
– Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800
Domains
20
LotjaGi6g1v0036600.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic; TrEMBL-Plants: tr|G7JA42|G7JA42_MEDTR Squalene/phytoene synthase; Found in the gene: LotjaGi6g1v0036600
Domains
16
LotjaGi6g1v0177100.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100
Domains
17
LotjaGi6g1v0177100.2
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00683 CDD 1 7.69