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Squalene and phytoene synthases signature 2.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: phytoene synthase, chloroplastic-like [Glycine max] gi|356526962|ref|XP_003532084.1| | 16 | ||
– | PREDICTED: phytoene synthase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502178716|ref|XP_004516319.1| | 15 | ||
– | Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1| | 18 | ||
– | Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1| | 18 | ||
– | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600 | 17 | ||
– | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600 | 17 | ||
– | Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800 | 20 | ||
– | Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800 | 20 | ||
– | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic; TrEMBL-Plants: tr|G7JA42|G7JA42_MEDTR Squalene/phytoene synthase; Found in the gene: LotjaGi6g1v0036600 | 16 | ||
– | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100 | 17 | ||
– | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100 | 16 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd00683 | CDD | 1 | 9.09 |