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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0247700 |
| Transcript ID | LotjaGi6g1v0247700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|I1L118|I1L118_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0247700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55980355..55985763) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGGTGCTTGGAAGGTGTTATCAGAGTAGCACTCTTAATTTGAGGTTGGATGTTCAGTCAGAGCATGGATCCTGCAAG GGGTGCTAGTGGTGTTGGAGGGACTGTGTTAATTCCCATGCGGTTCGTGTGGCCGTACGGTGGAAGGAGTGTATTTCTTA CTGGTTCTTTCACAGGGTGTGTATTTTGTTGATTGCTATACATGGATATGTTAATTTTTGTTTGCTAAAATGCTCTAGTT TTAGGCTTGTTTATGTCTGTTTGTTTCCTTTTTTGCTCGTCTATTTGATGTAAAATTTTTCTTTAAGGTGGTCTGAACCT CTACCAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCTCCTGGTTACCATCAGGTCAG TTTATGATTGTGTTATACTGTGTTTTATTGTTGGATGGTGATTGAGTAGACCTGTAGAAGTTTCATTGTGTTTCTACGTT TATATCTATGTTTGTTGGTTTGGGATAAGATAATTTCCATTGACAATTTTTGAGAGAGATATTTGAGTAGAAAGGCATTC ATTAATTGTTTGGCTTCTGAGGGTAGTAGCCGACTAGCTCTATATTTCTGGTAAATAGTAACAAATATGGAATTCATGGT TTAATAGGAAAGTGTAATGGTTTGAGGTTATTTAATAGGTTTTAGCATTTTCTTAATTTTGAAGTGTTATTTTGTTTTCT CAATGGTGATTGTTATCTGAGCTTGAGCAGTAGTATACTGCGTATGTTTGAGGTTGCAAGTATCTGATTATGATGTGCTA AGGTGGAATCTAAAAAAATATGCTTTTGAGAAAATTTGGCCTTTATTCTTGTTGTCTGGGTACATAATTACTTACTTTGA AGTTGCTTGAATGCAGTACAAGTTTTTTGTTGATGGAGAGTGGCGGCATGATGAGCATCAACCTTGTGTACCTGGAGATT ATGGGATAGTCAACACTGTCTTATTGGCTACTGATCCTAACTACATACCTGTTATAACTACAGATGCAGCGTCTGAAAAT AACATGGATGTGGATAATGAGGCTTTTCGCCGTATGGTAAGATATGGCTGCTCTATGTGTGCTGCTCTTGCCTAGGTTGT ACTTTTGAATGATATTTTCAATGAAAATGTTGATACAGGGATCTTCTCGAGTCTGGAGAATTTTTCTAGCTCATCTTAGA ACTCCTAAACCCATCTATTTATTATGGCCTCTGAATCCTGCAATATTTATCCCAGTGTTATCAAATAGTTTGGCTAATCG CGATGCCGCTATTGCCCGCTATTCGCCGCTAAATAGCTGCCGAAATAGCGGATTTTTGGCTCACCGCGATCGCGATTTGA CAACACTGATTTATCCATGTAGGTTTGTTGAGTCTTATATTTGGAATCAAAATAAATATAACCTTCCTGATTGTCTTATT TGTCATAAGTGATACCCTGGTGGCTTACAATGTCTTGTTTCACATGCTTGTTCTGTTGCACTTTTTAATATGATGTCTGC TCATGTATAAAATGGCATCTTGTATATTTGATCCTTAAATTTAATTGTTCCAACATTAAATATAATATGTTGCTTGCTTT ATAGCAAATCCGGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCCGTC AACGTATTTCTGCATTTCTATCGATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTACTAATGACCCTGACC CTTTATTTTGTTCTTTGTGAGTTTCTGTCATGAAATCGACAAAACATGAATTACAAAATTAATTTAGTGACTCCTGGGCA CAGGTTGTTGCCTTGGACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGTACGGTGTTTTTTTTT CTGGTAGACTAAACTTTGCACAACTTTTTTCTCTCCATATATTGAATAATGTTTCTAAAATATGTATGATTACTGTCACA TCTATCGTGTTATAGTTTTAAGACTTTCTCTTCATTTATCGTATTATAGTTTTCTCAGTTTTAGTGTTGTTGCATCTTCA TCCACTGCAGATTAAAGGTTTGCATATGCAGTTTTTCTGATCTGGATAATTTACAGGGAATTTACATAGCTCCTCTCTGG GACTTCAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTGTGGATTTTGTCTTAATTTTAAGAGAGGTATGTGTCTTATA TTAACAGTTTTGCTTCAATCTTATACAGAACTGCCTGTAAAGTTCAAGTGTTCACACACACACACACACACAGATATATA TATATATATATATCTGTTATATATATATCTGTATGTATGTATTTATATATATATTACTTTGCCGTGCTTGTTGAAACTTA TTATCGCCCTATTCTCAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAACTTGAAACACATACCATATCAGCTTG GAAAGAAGGAAAGTCATATCTAAACAGACAGAACAACAGACATGGAATTGCATTATCAAGACTTTTTATCCATGTAAGTG TTTTGTATGTGACATACTAACAATGTTTATCCATTCATGTGGTTCTGTATGTCTTTAGAATGCGATAAGGCTTGTATTTT TCACTACTTGCAGATTACGGTGTGTAATATATGTGTGCATGCGCGAGAGTGTGTGTGCGTGTGTGTTTATAAAGATGCTT AATGAGCATGTTTAGTTAATTATAGATCCACAATTTTGTAAAATTCTCCCTCTCCCTGGGTACGTGTAGAATGGTGTTTG CAACAAGCGTAAATTCACTAAGCTGTTAGGGTGACTTAGGGAACACATGGCTTATGCAAAGGGGAGGAAATTTTGTTCTC TATAATTGTGATGATACCATGATCCTAACTGAGTATATATTAGCAACATATCAAGCATTGGCTTGTATAAATGTTTTATC AATCATTTTCAAGTATTACTATTATTATTTAATACCCATCCCATTTACCATGCTCTCATTTCAGGCCGAGAAGAAATTGT GATGTGTCCGAGTAATCTTCCTTAAAATCTATCTTGGTCTTGGCTTGTATAAATGTTTTATCAATCATTTCATGATTGAA TGAGTTTAACCTAAGAATGCTTAAGTGAAACAATTTTGGGTCCTGCTTCTTTGTTTATGCCATAGTTATCGATAGTGCGC AACAGCGGCACTTTAGCGCTGTCTCGTAGTGTAGCTGACCCCTGCCGCGACGGGATTGCGGCTGTGAAATCCTGCTATTC GCAGTCAATAGCGGCCTTCCCTTTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCTGCGATCCGCGATTGACTAC TATTAATGCTTTAATATAAATGTGTCTCTCTATTGCACTAACTGCACTATTAGTTCACTTGCTATGTTTGACTTTTTGGA TATTTGTTTATGATGCAGGCAGGGCCATATGATAACCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAAC AGTTCCTATTATGCATTCGTCTTCTGAAGATGGTTCATACCCACAGTTACTGCATCTTGCTTCACTTTCAGGAATACTTA AATGTAAGATTTTATGATATTTTCTTTATATTGTTATTAAATGTTCTTTAATCTTACCAAATTGATTTTTCAGGCATTTG TAGGTATTTTAGGCACTGCTCTAGTTCATTGCCTATACTTCAATTTCCAATCTGTGCAATACCTGTGGGAACGTGGGTAC CTAAAATCGGGGAATCAAGTCGGCGGCCCTTAGCAATGTTGAGACCAAGCTCTTCTCTTGCTGCAGCCCTAAATTTATTA GTTCAAGGTGTGAACTTTTTGTCTGACCTTGAACATAGTGTATCAAAAAGAAAAGCAACAGAGAGAAAGAATGCAGAAAT TGGTATCCTATTTTACTTCTGAGGTATTAGGCTGATGATAGAGGGCTCTGTCTCCGACTTTGAGAAGAATGTTGCTTTGT GATTAATTATTGAAAGAGAGCTTAAATTTATGGGGTGATTCGTTTTGTTTGTTTCAAGCATCAAAATATAAAATATGTTT TTGCTTTTAATATGACTATAATTATACTTAAATTAGTTCTTGCCCTTTGTTTTGCAGCCGAAGTTAGTTCAATACCAATA GTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGGTATGTTATTTCCTACTATATCCTCAGTATTAGACTTCA TAGTGCCTTGTTTGAAGTACTATAAAGCCAATCTATGGTTCAAGTATTTCATTCTTTGCAGTGGCTTCTAAAAGCTTCTA ATTTTCCCTCCCCGCCCTTCTTTATTTGTAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATTCTCACATCAATCTT GATGAGATGACTGTTCATGAGGTAAGTTTGTTTTTCATTTTTGCATACCAATTAACTTATGAAGAATTATATTTTGAAAA TTAAAATACATGTGTTCTGATTTCATCTTTTGCTTATTAATCCAGATAAGCAATTTCCTTTGTTGTTGAAGTACCTCAGT CTTGTATGGCAAATGATATTTGCACAGCTGCACATAGCTTTTGTTGTTGTTGTTGTAGCATAGCTGCACAAGGGGTCAAT ATGTTTGTGTTTTGTGAACTTTTTGCATTTTTGTTGTCTTGATTGATCTTTATTATTATTATTTTTTTGGGGGGGGGGGG GTGAGGAAGGAAGATTTCAATTTAAATTGCAATGTTACTGTTAGTGCCATTTTCAGTCTGTAGTCTAAGGCAAGGTTACA GAAATATTCATGAGGTCCATTTTTTATTTGGTGATTTTCTTCTTGGGATCTCAGTATCTCCTTGCATGCTTTATTGTCCA GGCTTTGCAGTTGGGCCAGGACGCATATAGTCCGTATGAACTCAGAAGTCAAAGATGTCAGATGTGCTTACGCTCTGATT CGCTGCAAAAAGTCATGGAACGGTTGGCAAATCCAGGTGAGCTTGTTTTGTCCCCCTCCCTCCTCTTTTTCAGACGACGC ATGCCATGCGGTTTCATAATTGTTTTAACTGTCTGATGGGGTGACATTCAAGGTTGCTTAATGTTAGTTTTCGTTCCGTG GGGTTGTCTTCCTGAGTTAGCCTTCAGTTCTTGTCAACATTCATTTGGATCTTTCTGTATTTTGTAGTTTGTACCCACAA GTTTTAATTGAATAGGGAGGGTGTATAATTATTTTCAGATATCCATTGACTTCATTTTGAAGATTGTGATGCTGGAATTT TTGTGATCTCTAATACAGTAATACTTGATTGACTCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGT AGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG
CDS sequence (LotjaGi6g1v0247700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCTCCTGGTTACCATCAGTACAAGTTTTT TGTTGATGGAGAGTGGCGGCATGATGAGCATCAACCTTGTGTACCTGGAGATTATGGGATAGTCAACACTGTCTTATTGG CTACTGATCCTAACTACATACCTGTTATAACTACAGATGCAGCGTCTGAAAATAACATGGATGTGGATAATGAGGCTTTT CGCCGTATGCAAATCCGGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATGCTGATGTACAGATCTC CCGTCAACGTATTTCTGCATTTCTATCGATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGG ACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATTTACATAGCTCCTCTCTGGGACTTCAGC AAGGGGCAATTTGTTGGTGTTCTTAGTGCTGTGGATTTTGTCTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCT GACAGAAGAGGAACTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAACAGAC ATGGAATTGCATTATCAAGACTTTTTATCCATGCAGGGCCATATGATAACCTGAAAGATATTGCCATGAAGATCTTGCAA AAGGAGGTTTCAACAGTTCCTATTATGCATTCGTCTTCTGAAGATGGTTCATACCCACAGTTACTGCATCTTGCTTCACT TTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCATTGCCTATACTTCAATTTCCAATCTGTG CAATACCTGTGGGAACGTGGGTACCTAAAATCGGGGAATCAAGTCGGCGGCCCTTAGCAATGTTGAGACCAAGCTCTTCT CTTGCTGCAGCCCTAAATTTATTAGTTCAAGCCGAAGTTAGTTCAATACCAATAGTTGATGATAATGACTCATTACTGGA TATATATTGTCGGAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATTCTCACATCAATCTTGATGAGATGACTGTTC ATGAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCGTATGAACTCAGAAGTCAAAGATGTCAGATGTGCTTACGCTCT GATTCGCTGCAAAAAGTCATGGAACGGTTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCG TGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG
Protein sequence (LotjaGi6g1v0247700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWRHDEHQPCVPGDYGIVNTVLLATDPNYIPVITTDAASENNMDVDNEAF RRMQIRLTDGTLSEVLPRISDADVQISRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYIAPLWDFS KGQFVGVLSAVDFVLILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNRHGIALSRLFIHAGPYDNLKDIAMKILQ KEVSTVPIMHSSSEDGSYPQLLHLASLSGILKCICRYFRHCSSSLPILQFPICAIPVGTWVPKIGESSRRPLAMLRPSSS LAAALNLLVQAEVSSIPIVDDNDSLLDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYELRSQRCQMCLRS DSLQKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 443 | 443 | 1.6E-247 | – | |
| CDD | 1 | 52 | 52 | 1.45517E-16 | – | |
| PANTHER | 1 | 443 | 443 | 1.6E-247 | – | |
| Gene3D | 1 | 73 | 73 | 1.9E-11 | ||
| Pfam | 6 | 55 | 50 | 4.7E-14 | ||
| SUPERFAMILY | 6 | 54 | 49 | 1.12E-11 | ||
| Gene3D | 100 | 284 | 185 | 7.6E-47 | – | |
| SUPERFAMILY | 110 | 280 | 171 | 1.02E-25 | – | |
| CDD | 119 | 268 | 150 | 1.40487E-41 | – | |
| ProSiteProfiles | 123 | 185 | 63 | 9.727 | ||
| SMART | 129 | 178 | 50 | 0.08 | ||
| Gene3D | 301 | 443 | 143 | 2.8E-36 | – | |
| ProSiteProfiles | 307 | 370 | 64 | 9.609 | ||
| SUPERFAMILY | 308 | 442 | 135 | 3.05E-21 | – | |
| Pfam | 309 | 355 | 47 | 6.2E-6 | ||
| CDD | 310 | 442 | 133 | 8.3939E-43 | – | |
| SMART | 311 | 359 | 49 | 6.7E-5 | ||
| ProSiteProfiles | 389 | 443 | 55 | 8.816 | ||
| SMART | 393 | 442 | 50 | 0.012 | ||
| Pfam | 396 | 442 | 47 | 7.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0247700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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