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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0251000 |
| Transcript ID | LotjaGi6g1v0251000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G50990.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990; TrEMBL-Plants: tr|A0A072V6I7|A0A072V6I7_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0251000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56308163..56311009) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTAGTCATGTGAAGAATTGGTTTACAGCCATTTACTACGTAAGGCTTTGTGCAGTGGGGTTGAAGAAGATGAACAG AAAAAACAACAGTGAAAAATAAATAACAACCAATGAGTACATGAACAATGAAACAAGGACAATGCTGATCAAGTTGCAAA GGTTAATACATGGAGCTATCAAGTTTGGTTCTCTGTCAGAATCATGGTCCATCACTCAACGTTCCTCGCATTCTCTCACA GGTGATTTCACCCACACACACAATCTCTTTGTTTTGCTCAGTTCACTATTGATAGCTACACCTACATTGCAAAGTTGTTG ATTCCCTCGCTTTCACTTGTGTTTCAGAAGATCACAGTGTGTTCCACCGCGTTCTACAACGCTCCAGAGCTTCTATGGAC TCCACAACCGCCGCTAAAACTCACGCAAAACTCATTGTACACGGGTATGCCACTTACCCATCTCTTGTGGCGGCTCTGAT ATCAACCTATGCTCGCTGTCACCAACCCCACATTGCCCATCACGTTTTCTCCCGAGTTATGGATACCTTCAGCAAGAATT TAGTGATTGAGAGCTTGATGAAAGCTGGGGAATGTGACATTGCCAGGAAGGTGTTTGACAAAATGCCTGTTAGAGATGTG GTCACATGGAACACTTTGATTGGAGGGTATGTTAAAAATGTGCGCTTTCTTGACGGGTTGAGGCTTTTCCGTGGCATGCT GAGTGCCGAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTTGTTACCGGGTGTGCGCGCCTTGGGGCTCTTTGCAATG CCAAGTGGGTGCATGGTTTGATGCTTGAGAAAAGGGTTAAACTGAATTATATATTGAGTGCTGCATTGGTTGACATGTAT GCTAAGTGTGGTAGGATTGATGTTTCAAAGCAAGTTTTTGACACTGTGGCGCGTGATCATGTGTCTGTTTGGAATGCTAT GATTAATGGGTTAGCGGTTCACGGGCTTGCTTTGGATGCTATTGCTGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGC CGGATTCCATTACCTTTGTTGGGATTCTTAAAGCATGTAGCCACTGTGGATTGGTTAACGAAGGTCGTGAGCACTTTAAT ATAATGCAGAATCGGTTCTTGATTCAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGAA CTTGGAAGAAGCCTGTAATATGATTAAGGCTATGCCGGTGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGAGTGCAT GTAGAATTCACGGAAAGAAAGAACTAGCTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTGGAGATTTTGTCTTA CTATCAAATATGTATTGCTCTTTAAAGAACTGGCATAATGCTGAGAGAGTGAGAAATATGATGAAAATAGGAGGAGTTCG TAAAAAGCGGGGTAAGAGTTGGATTGAATTGGGGGACAGCATCCACCAATTTAATGCAGCTGATCAGTCACATGCTGAAA TGAAAGCAATTCACAGGGTGCTGGAAGGTTTGATCCAGAGAGCTAAGTTGGAGGGCTTCACCCCCTTGACGGATCTCGTA TTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAACATATCATAGTGAGAAGTTGGCCTTGGCCTATGGGATTCT GAAAAGTAGCCCTGGAACAAAAATTAGGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATAATTGGTTTAAAATTG TTTCAAGAATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCACCAATTTGAGGGCGGATTTTGCTCTTGT GGAGACTACTGGTAGCTATGAGAGTTCATGCTTGGTTGTATATGAGCAGCCATTAGCTGATACACATTAGATGAATGAGA AGAAACTGGCAGAAGTGAGTGAAGGGGATACGAAATCCTTATGCATTTAAATATGCGCAGCTCTCTCTAGTCTCTACAGC CACCGAAATCCTATCCACTGCGGTCTATGGCTTGCCTGTAAGCTTAAAAACCATGTTTGGGCATGTAATCTCTGAGTTAC ATGGTTTTAAGCTGCTATTATGCAAATATGGGTGAAGTAAAAATGGTAGCATGCAATTTGGGAATCATTAGTTTTTTACC TTTTTCTGATAATGGAGAATGTCCCTACTGAGGATGAGCAAGAAGTAAACCCATAAGTAGACAAGTGACAGCCATTCAAG TGAGCCCAATGGCACAAAGAAACGGTTATTGCAATGAACACAGAAGGGGAAATAAGTACAGCTATTGCAGTGAACCTAAA AGGAGATGAAGTGGCTGCACAGCACTCATACCATAAAGGAAAAGAGGACATCCAGATGGACCATGATGCTTGAGAACTCC TTGTCGGATTAAGAAATAACGAAATTAGAAGGGCAATATTCAAAGAAACTGACTTTAAAGAGGAGTAGTAGGTGGTGGAA GTGGAAGTCCACTTCCCCTTTTTGGTCCGGAAGCTGCTACTTAACATTTTTCTGGGATCACTTCTTGCTGACCTCCAAGT AGGTTATTGCCAATTATTAGAAAAAAGGAACAGTGATTGTAATTGCAGACAGTCATTTTTAATTTACCCATTATATTTAT ACAATAACAACTTAGAACAATTTCTACTTTACCCATTGCTTCATTCACTCTCATTGGACTACATCCATCATTCATCAATT TCATATGGATTTATAAAATTGTTGTAGTCAGCACTAAAAAATAGAGAGCTCTTGTACTATGATTTTATCAAGTGCGATCC TCTCTTGTTTAACAGTTAATACTGATCATTTGAAAGGCTTTACCCCT
CDS sequence (LotjaGi6g1v0251000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAATGAAACAAGGACAATGCTGATCAAGTTGCAAAGGTTAATACATGGAGCTATCAAGTTTGGTTCTCTGTCAGA ATCATGGTCCATCACTCAACGTTCCTCGCATTCTCTCACAGAAGATCACAGTGTGTTCCACCGCGTTCTACAACGCTCCA GAGCTTCTATGGACTCCACAACCGCCGCTAAAACTCACGCAAAACTCATTGTACACGGGTATGCCACTTACCCATCTCTT GTGGCGGCTCTGATATCAACCTATGCTCGCTGTCACCAACCCCACATTGCCCATCACGTTTTCTCCCGAGTTATGGATAC CTTCAGCAAGAATTTAGTGATTGAGAGCTTGATGAAAGCTGGGGAATGTGACATTGCCAGGAAGGTGTTTGACAAAATGC CTGTTAGAGATGTGGTCACATGGAACACTTTGATTGGAGGGTATGTTAAAAATGTGCGCTTTCTTGACGGGTTGAGGCTT TTCCGTGGCATGCTGAGTGCCGAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTTGTTACCGGGTGTGCGCGCCTTGG GGCTCTTTGCAATGCCAAGTGGGTGCATGGTTTGATGCTTGAGAAAAGGGTTAAACTGAATTATATATTGAGTGCTGCAT TGGTTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAAGCAAGTTTTTGACACTGTGGCGCGTGATCATGTGTCT GTTTGGAATGCTATGATTAATGGGTTAGCGGTTCACGGGCTTGCTTTGGATGCTATTGCTGTTTTTTCAAGGATGGAGGT GGAAAATGTTTTGCCGGATTCCATTACCTTTGTTGGGATTCTTAAAGCATGTAGCCACTGTGGATTGGTTAACGAAGGTC GTGAGCACTTTAATATAATGCAGAATCGGTTCTTGATTCAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTCTTG GGACGAGCAGGGAACTTGGAAGAAGCCTGTAATATGATTAAGGCTATGCCGGTGGAGCCTGATGTTGTTATCTGGAGAGC ACTTCTGAGTGCATGTAGAATTCACGGAAAGAAAGAACTAGCTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTG GAGATTTTGTCTTACTATCAAATATGTATTGCTCTTTAAAGAACTGGCATAATGCTGAGAGAGTGAGAAATATGATGAAA ATAGGAGGAGTTCGTAAAAAGCGGGGTAAGAGTTGGATTGAATTGGGGGACAGCATCCACCAATTTAATGCAGCTGATCA GTCACATGCTGAAATGAAAGCAATTCACAGGGTGCTGGAAGGTTTGATCCAGAGAGCTAAGTTGGAGGGCTTCACCCCCT TGACGGATCTCGTATTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAACATATCATAGTGAGAAGTTGGCCTTG GCCTATGGGATTCTGAAAAGTAGCCCTGGAACAAAAATTAGGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATAA TTGGTTTAAAATTGTTTCAAGAATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCACCAATTTGAGGGCG GATTTTGCTCTTGTGGAGACTACTGGTAG
Protein sequence (LotjaGi6g1v0251000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNETRTMLIKLQRLIHGAIKFGSLSESWSITQRSSHSLTEDHSVFHRVLQRSRASMDSTTAAKTHAKLIVHGYATYPSL VAALISTYARCHQPHIAHHVFSRVMDTFSKNLVIESLMKAGECDIARKVFDKMPVRDVVTWNTLIGGYVKNVRFLDGLRL FRGMLSAEVEPDGFTFASVVTGCARLGALCNAKWVHGLMLEKRVKLNYILSAALVDMYAKCGRIDVSKQVFDTVARDHVS VWNAMINGLAVHGLALDAIAVFSRMEVENVLPDSITFVGILKACSHCGLVNEGREHFNIMQNRFLIQPQLEHYGTMVDLL GRAGNLEEACNMIKAMPVEPDVVIWRALLSACRIHGKKELAEFAIANISRLESGDFVLLSNMYCSLKNWHNAERVRNMMK IGGVRKKRGKSWIELGDSIHQFNAADQSHAEMKAIHRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLTYHSEKLAL AYGILKSSPGTKIRISKNLRICQDCHNWFKIVSRILNREIIVRDRIRFHQFEGGFCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 238 | 229 | 3.0E-29 | ||
| PANTHER | 66 | 188 | 123 | 4.6E-76 | – | |
| ProSiteProfiles | 106 | 136 | 31 | 7.717 | ||
| Pfam | 111 | 136 | 26 | 0.049 | ||
| Pfam | 137 | 185 | 49 | 4.5E-10 | ||
| ProSiteProfiles | 137 | 171 | 35 | 11.29 | ||
| TIGRFAM | 139 | 172 | 34 | 2.2E-6 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.068 | ||
| PANTHER | 192 | 400 | 209 | 4.6E-76 | – | |
| ProSiteProfiles | 207 | 237 | 31 | 6.259 | ||
| ProSiteProfiles | 238 | 272 | 35 | 9.756 | ||
| Gene3D | 239 | 438 | 200 | 1.4E-30 | ||
| Pfam | 239 | 285 | 47 | 6.3E-8 | ||
| TIGRFAM | 241 | 273 | 33 | 2.1E-5 | ||
| ProSiteProfiles | 273 | 303 | 31 | 7.377 | ||
| ProSiteProfiles | 309 | 339 | 31 | 7.059 | ||
| Pfam | 312 | 336 | 25 | 0.0086 | ||
| ProSiteProfiles | 341 | 371 | 31 | 5.097 | ||
| ProSiteProfiles | 372 | 406 | 35 | 6.401 | ||
| Pfam | 409 | 532 | 124 | 1.5E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0251000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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