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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0251000 |
| Transcript ID | LotjaGi6g1v0251000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G50990.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990; TrEMBL-Plants: tr|A0A072V6I7|A0A072V6I7_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0251000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56309155..56310663) extracted from Lotus japonicus Gifu genome v1.2.
GAAGATCACAGTGTGTTCCACCGCGTTCTACAACGCTCCAGAGCTTCTATGGACTCCACAACCGCCGCTAAAACTCACGC AAAACTCATTGTACACGGGTATGCCACTTACCCATCTCTTGTGGCGGCTCTGATATCAACCTATGCTCGCTGTCACCAAC CCCACATTGCCCATCACGTTTTCTCCCGAGTTATGGATACCTTCAGCAAGAATTTAGTGATTGAGAGCTTGATGAAAGCT GGGGAATGTGACATTGCCAGGAAGGTGTTTGACAAAATGCCTGTTAGAGATGTGGTCACATGGAACACTTTGATTGGAGG GTATGTTAAAAATGTGCGCTTTCTTGACGGGTTGAGGCTTTTCCGTGGCATGCTGAGTGCCGAGGTTGAGCCTGATGGGT TCACCTTTGCTTCTGTTGTTACCGGGTGTGCGCGCCTTGGGGCTCTTTGCAATGCCAAGTGGGTGCATGGTTTGATGCTT GAGAAAAGGGTTAAACTGAATTATATATTGAGTGCTGCATTGGTTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTC AAAGCAAGTTTTTGACACTGTGGCGCGTGATCATGTGTCTGTTTGGAATGCTATGATTAATGGGTTAGCGGTTCACGGGC TTGCTTTGGATGCTATTGCTGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCGGATTCCATTACCTTTGTTGGGATT CTTAAAGCATGTAGCCACTGTGGATTGGTTAACGAAGGTCGTGAGCACTTTAATATAATGCAGAATCGGTTCTTGATTCA GCCGCAACTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGAACTTGGAAGAAGCCTGTAATATGATTA AGGCTATGCCGGTGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGAGTGCATGTAGAATTCACGGAAAGAAAGAACTA GCTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTGGAGATTTTGTCTTACTATCAAATATGTATTGCTCTTTAAA GAACTGGCATAATGCTGAGAGAGTGAGAAATATGATGAAAATAGGAGGAGTTCGTAAAAAGCGGGGTAAGAGTTGGATTG AATTGGGGGACAGCATCCACCAATTTAATGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTCACAGGGTGCTGGAA GGTTTGATCCAGAGAGCTAAGTTGGAGGGCTTCACCCCCTTGACGGATCTCGTATTGATGGATGTTTCTGAAGAGGAAAA GGAGGAAAATTTAACATATCATAGTGAGAAGTTGGCCTTGGCCTATGGGATTCTGAAAAGTAGCCCTGGAACAAAAATTA GGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATAATTGGTTTAAAATTGTTTCAAGAATATTAAACAGAGAGATA ATTGTGAGAGATCGCATCCGTTTTCACCAATTTGAGGGCGGATTTTGCTCTTGTGGAGACTACTGGTAG
CDS sequence (LotjaGi6g1v0251000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCACAACCGCCGCTAAAACTCACGCAAAACTCATTGTACACGGGTATGCCACTTACCCATCTCTTGTGGCGGC TCTGATATCAACCTATGCTCGCTGTCACCAACCCCACATTGCCCATCACGTTTTCTCCCGAGTTATGGATACCTTCAGCA AGAATTTAGTGATTGAGAGCTTGATGAAAGCTGGGGAATGTGACATTGCCAGGAAGGTGTTTGACAAAATGCCTGTTAGA GATGTGGTCACATGGAACACTTTGATTGGAGGGTATGTTAAAAATGTGCGCTTTCTTGACGGGTTGAGGCTTTTCCGTGG CATGCTGAGTGCCGAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTTGTTACCGGGTGTGCGCGCCTTGGGGCTCTTT GCAATGCCAAGTGGGTGCATGGTTTGATGCTTGAGAAAAGGGTTAAACTGAATTATATATTGAGTGCTGCATTGGTTGAC ATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAAGCAAGTTTTTGACACTGTGGCGCGTGATCATGTGTCTGTTTGGAA TGCTATGATTAATGGGTTAGCGGTTCACGGGCTTGCTTTGGATGCTATTGCTGTTTTTTCAAGGATGGAGGTGGAAAATG TTTTGCCGGATTCCATTACCTTTGTTGGGATTCTTAAAGCATGTAGCCACTGTGGATTGGTTAACGAAGGTCGTGAGCAC TTTAATATAATGCAGAATCGGTTCTTGATTCAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGC AGGGAACTTGGAAGAAGCCTGTAATATGATTAAGGCTATGCCGGTGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGA GTGCATGTAGAATTCACGGAAAGAAAGAACTAGCTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTGGAGATTTT GTCTTACTATCAAATATGTATTGCTCTTTAAAGAACTGGCATAATGCTGAGAGAGTGAGAAATATGATGAAAATAGGAGG AGTTCGTAAAAAGCGGGGTAAGAGTTGGATTGAATTGGGGGACAGCATCCACCAATTTAATGCAGCTGATCAGTCACATG CTGAAATGAAAGCAATTCACAGGGTGCTGGAAGGTTTGATCCAGAGAGCTAAGTTGGAGGGCTTCACCCCCTTGACGGAT CTCGTATTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAACATATCATAGTGAGAAGTTGGCCTTGGCCTATGG GATTCTGAAAAGTAGCCCTGGAACAAAAATTAGGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATAATTGGTTTA AAATTGTTTCAAGAATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCACCAATTTGAGGGCGGATTTTGC TCTTGTGGAGACTACTGGTAG
Protein sequence (LotjaGi6g1v0251000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSTTAAKTHAKLIVHGYATYPSLVAALISTYARCHQPHIAHHVFSRVMDTFSKNLVIESLMKAGECDIARKVFDKMPVR DVVTWNTLIGGYVKNVRFLDGLRLFRGMLSAEVEPDGFTFASVVTGCARLGALCNAKWVHGLMLEKRVKLNYILSAALVD MYAKCGRIDVSKQVFDTVARDHVSVWNAMINGLAVHGLALDAIAVFSRMEVENVLPDSITFVGILKACSHCGLVNEGREH FNIMQNRFLIQPQLEHYGTMVDLLGRAGNLEEACNMIKAMPVEPDVVIWRALLSACRIHGKKELAEFAIANISRLESGDF VLLSNMYCSLKNWHNAERVRNMMKIGGVRKKRGKSWIELGDSIHQFNAADQSHAEMKAIHRVLEGLIQRAKLEGFTPLTD LVLMDVSEEEKEENLTYHSEKLALAYGILKSSPGTKIRISKNLRICQDCHNWFKIVSRILNREIIVRDRIRFHQFEGGFC SCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TMHMM | 13 | 32 | 20 | - | – | |
| PANTHER | 15 | 136 | 122 | 4.5E-76 | – | |
| Gene3D | 22 | 182 | 161 | 2.1E-29 | ||
| ProSiteProfiles | 50 | 80 | 31 | 7.717 | ||
| Pfam | 55 | 80 | 26 | 0.043 | ||
| Pfam | 81 | 129 | 49 | 3.9E-10 | ||
| ProSiteProfiles | 81 | 115 | 35 | 11.29 | ||
| TIGRFAM | 83 | 116 | 34 | 1.9E-6 | ||
| ProSiteProfiles | 116 | 150 | 35 | 8.068 | ||
| PANTHER | 136 | 344 | 209 | 4.5E-76 | – | |
| ProSiteProfiles | 151 | 181 | 31 | 6.259 | ||
| ProSiteProfiles | 182 | 216 | 35 | 9.756 | ||
| Pfam | 183 | 229 | 47 | 5.4E-8 | ||
| Gene3D | 183 | 381 | 199 | 1.2E-30 | ||
| TIGRFAM | 185 | 217 | 33 | 1.8E-5 | ||
| ProSiteProfiles | 217 | 247 | 31 | 7.377 | ||
| ProSiteProfiles | 253 | 283 | 31 | 7.059 | ||
| Pfam | 256 | 280 | 25 | 0.0075 | ||
| ProSiteProfiles | 285 | 315 | 31 | 5.097 | ||
| ProSiteProfiles | 316 | 350 | 35 | 6.401 | ||
| Pfam | 353 | 476 | 124 | 1.2E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0251000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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