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LotjaGi6g1v0276700.1

Overview

Field Value
Gene ID LotjaGi6g1v0276700
Transcript ID LotjaGi6g1v0276700.1
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Protein FAR1-RELATED SEQUENCE 8; TAIR: AT1G80010.1 FAR1-related sequence 8; Swiss-Prot: sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8; TrEMBL-Plants: tr|I1MFY4|I1MFY4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0276700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59359289..59364844) extracted from Lotus japonicus Gifu genome v1.2.

AAAGTAAAAGACTGCAAATATATACCAAGAAACTGATGCATTGTGATATTTGAGTAACGCACGGCACAGTACAGCGAGTA GCAGTATTCACTCATCTCCACCTCATCACTTCTAACGCAACGCAACGCAACGCAACGCAACGCTCCATTGCTTCTCTTCT TCGCTTCCGCCGCTGCAACAGTCATACCTCACCGCCGTAGCTCCGGTGAGTTTTTCTCCGACGTGCTGTTAGCAGATTAC ATTCTCAATCCAATTCGCTTATCAAATTAGATTCCGATTCTACAAATTGATAATCATTCTAGTAGCGTTGATGAATGTAG AGCATGAAAAATGAAAAAAATTCTTACAACCCCTTTGTTCTGTGTGCTATGCTCCTTTGAATATATGCTGAAAGAGTGTT CATTCAGATAGTTCTGGTGATGTTTGACTAGCATGCTTCAGCTGAATTTTGAATTGATTCTTTCATTGTTAAGCCCAAAT TTGAATTACCTAAGATTTGAGATCATGTATGGTAAGGCAGGATGACATATTAATGTGTTATACTTTTGACTGGCAGGACT CATGTAAACCCTCTTGGCGCGAGACCATGACCAACGGCACCGGGTGTTCTCCTAATGATAAGGGCTTGTCTCTCAGTCCT AATCTCGAAATCACGGTAATTCTTCATCTAAACACTGGAAACATGCCTATTTAGTTGTGGTATGCTGTGGTTTTTGCTTT GCTGTCTGATGTTGGGCTGGAGCATGTTTACCTGTCTGTCTGTCTGTTGCTCGAATTAACGAATGCTAGCTATGAATTTT CTTGCGAAGTCGAAAACTTTTATGATGCTGTTTTATGATGCTGGCGTGATATTTAGTTTAAATTTTGTGAATGGTTTTCA TTTCTTACTGTTATGTTGTGGTTTGTCTTGAAGAACCCGAGGCTTGGTGTTCATGCATTGAGAGTTATTGCTTGTTATCT AAGTCTGAAGATGTTCACCAAATTTTAGGAAAATATGTAATGTCGTGGGACTGACAGATTTTTCATTACTGCTAAGAATT TCTTGTGAGGTAAATGAGGGAAGAAGTGTATCAATTGTCTTGTGGTCGCTATTAGAATAAAAGAGAACAATGAATGGATT TTAATTATGGACAATACGTACATCAAATTCCTTATATTCACTTCATCAATTTCTCCAACTATATAATACATGTGGATACT TTTTTAAAATTCGACATCTGATTCTTAATGAATGCCATTTATTGTTAGAAAAAATATCCACGTGTTTTTGTTTGAATGGA GAGCTTGATAGCAAGAATATCAAGAACTTGATATAAGTTTTCTCCTTTAGTTATCTAGTGGTGACTACGATGAAGCATTG GATACGTGGTGCATTAGTGCAGGATTTCTGTTGACCATTTGATTTTTTTTAATGGGCGACCTTGATTGTTCACCGACCAC TGGTTGTAGTCAAATGGTGAAATTACACTTATGTCCATCTGAAAATTGTTTATTCATCTTGGGGACAGATGAAAGAAGAA AACCTAGGGTTGGAGTGAGATGGTTGTGGCCAGGGATGAAGGATGAAAATCTGATAGGGTGTGGTGGGATGGGAGATGTA GAAACAATATCTGAAAAGGGTTCCATTTTGTTGAATTTGTTTTTGGATAGCTCGATATGTACTGAACATAGGACTCTGAA GCGGGGGTATGAATAGAAGTTCCCAAAGCTGAAGTGGTCGCCGTAATTGTCTTGTGTGCTGTAACTACTTTCTAGGTGCC AGGTGAGAGAAAAAACAAGAATGATGGGTAAGGGTGACCTTGAGGGTCAGATTATATATTAGAAGGGGAGAGGTATGGGT GCTGCAAGCGATGTTTTTGGAACATAATTGTCGATGGTTATTTGAATAAGTGCGATCTCCATTTGTGTTACTGTTACCCG ACATTAAATAGAGATCCGGTGTTGGAGTTAAGTGGTTTGTGACTTTTTTCTAATTAGTGGAAATTTTGGCTGGTCCAGGG TGATTGATTTGTGACTTCCTCCATGTGCGTGGGGCTTGTAAGTTAGTTTGAAGAGGGGTTGAGTGTTTGTTTGCCTTTGG TAGCTGAAATATTTTTTATGTTTTATTTTTTGTATGACTTGACCTCAAAATGTGGTGATGTAGAAGAAAGAAGCATGCTT TCCTTCATTGCAGATCATATTTTTAAGCTATCTTCCTATGATATACTTACTCTAATGAAGCCTGAATTCTCAAGCCTCTT GAATATATTAGAAAGGGGAAATTACCAAATGAAGTCGGGGTTGGCCACTTGATGTTAAGCATCGATGCCAAATTCAACTG TTAGGGTCCAGCAACCTAGGATCAGATATTACTCCAGGGGTAAAGTAATCATAGTGTGTGGAAAAACTGTAATGCCATGA AATCCAGCAAATGCACCATGAACCTCCAATACAGAAGTTGTGAATTACTATCAAATAAATATACGATACTCAATATGGAC ATGTCTTGGCAGATGTCATACGCTTTTTATACTTGAAAAAATTGTATTTATCTTCAAGGTGATACATAACAAAAAATCAC CAACAGGTAGTGTCTAAAGCAACATAACACATGGAGGACGAAGAATCAAAGAAAGATAAAAGGAGATTAGCTAGTAGATA CTTAAAGCAACAAGCACATTTGAGTTTAGCGCATTTAATAGGAAGTAAGTAATGAAAAGCTAGTGATATCCGAGCTATAG GGAGAAGAATAATGTTCTTTTCAAATTACAGTACACGGTTCCTTTGTTTCAGTTTCACATAATTATTGGACTCATTCTTA AATTTTCATTTATATGCTTACCAGTAAAAGAACCTGTTATAACAAGTCTTTTTTGACACCCATATGGTAGTTTACCTTTG AAGCCACCTAGTTATCTTGCCTTTCACTTCAATTTTCTGTCACTGTTTGTTTTAGGATGTCATAGGTGCTCTGGAATGAC AGTAATTAATTTACAGAATTACGGAACAGCTAACAAAGAAAAATTAGTGCATTATAAATCATTCTGGGACAGATGCCCAA GCTTTTCTAGATATTCCTCTAGATCTGGGCTATCCGCTGGTGTGGAAAAAGTAGCTGAGTTATTGGTGCAAATATATAAT AATAGCATAAAGTGAGAGAGAGGGAAAAGGGGTGGGTGAAGGATCATGATTGTTTAGAGAGCAAATAAAAGAAACTCACT CTAGTTAGCAGTGTACAGCTTCAAGTTTGCAACTGGCAAGGCCATCTTTGAGCTGGGTTGTCAAGATATTTCAGTTTCTG TTATCAATTTTAATGCATACTCAAATTTCTTATTTCCTATATATATCTTAAGTTAAATTTGGAATTTTTTACCACCTTTT CCAGATCGATGAGGAATCTCCAAACAGTGAGCAACTACTTGAGATTGAGGATGAGGGCAACAGGCTTGAGACTAGCTGTG GTCAGTTATTTGAGATTGATGGAAGCAAACATGAAAATGGGAGGTATGAAACAACAATAGTTGATAGTAATAGTGGAGAA TCTCAAGGAAAAGAGTACCCTCCACCAGTTGTGGGAATGGAATTTGATACTTATGATGATGCCTACAACTATTACAATAG CTATGCCAAGGAAACTGGATTTGGCATTCGGGTTAAATCTTCGTGGACCAAACGCCACAGCAAAGAGAAGCGTGGTGCTG TGCTGTGCTGCAACTGTGAAGGTTTCAGAACAATTAAAGAAGCAAATAGCCACAGGAAAGAAACAAGAACTGGCTGTCTA GCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAAGTTGGATGAAGTCAAGCTTGAGCATAATCATTCATTTGA TCCTGAGAGAGCACAAAACTCTAAATCACATAAGAGGGTGGAAAGTGGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATG TTGAGGTACGCACAATCAAGTTATATCGAATGCCAGTTGTAGATACATCAGGTTATGGGAGCTCAAATTCTAATGAAGGA AGAGGTAGCAACACCATTAATTTTTCCAGACGTTTGAAACTTAAAAAAGGCGATGCAGAACTTATTTCAAATTACTTCTG CCGCAGTCAACTAAAGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAATATATTTTGGA TTGATTCTAGATCGAGGGCTGCATATAGTTATTTTGGTGACGTGATTGCATTTGACTCAACATATTTGTCAAACAATTAT GAGATTCCACTGGTTGCATTCGTCGGTGTTAACCACCATGGGCAGTCTTTTTTGCTAGGCTGTGGTCTGCTTGCGGATGA GGCATTTGAGACGTATATTTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGACCTCCACAGACCATTATTACAA ACCAATGTAAGACCATGCAAAGTGCAATAGCAGAGGTTTTCCCTAGAGCTCACCACAGAATTTCTCTATCACAAGTCATA CAGAGCATTCTTGGATGTTTGGTGCAGTTTCAGGAATATGAGGTATTTCAGATGGCACTGACTAAAGTGATATATGACCC CAAAACAGTAGATGAATTTGAAAGGGCTTGGGATGATCTGACCCAGCGCTTCGGCATAAGAAATCATGAAAAGCTTCAAA CCTTGCATGACGAACGAGAGCATTGGGCTCCAATTTACTCCAAGGACACATTCTTTGCTGGAATTTCTGATTATGAAAAG GGTGAGTGTGTCATTCCCTTTTTCAAGGGTCATGTACATCAGCAAACTACCTTGAAAGATTTTTTTGAGATTTATGAGTT AGTTCTGCAGAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAGAGCTCGAGCCCATTACTGAAGACTAGAT GCTACTATGAGTTGCAACTCTCTAAACTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGTTGATGATGCCC ACTTGTTTTAACGTCTCAGAAATTCAAACAAATGGGTCTGCAGTGACGTACATGGTAACCGAACACGAAGGGTTAGAATC TTCATCACATGCAAGGCATTTTGAAGTGATGTATGATAAAGCCGGCGCAGAAGTACGCTGCATTTGTAGTTGCTTTAACT TCAAGGGCTACCTGTGCAGACATGCTTTGTATATCCTTAATTATAATGGTGTGGAGGAAATTCCATGCCAGTATATTTTA TCAAGATGGAGGAAGGATTTTAAGAGATTGTATGTACCTCATCTCAGCTCCAATAATGTTGATATTAGCAACCCAGTTCA GTGTTTTGATCATTTGTACAAACGTGCCATGCAAATTGTTGAAGAAGGGATGATATCCCGAGATCATTATATGGCTTCTT GGCAAGCATTTAGAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGATAAATAAATCAAGAATAATGCTGATAATATGTTG TACATAATTTACTATAATTTTTTCGTCGTTTATCTGGCATTAATACTCATATATGGGTCCTTCTTTTAGCATGTTTGATC AGCTTCTCTTTCAACTGAATCAATTCTAAAACTCAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCAACGGCACCGGGTGTTCTCCTAATGATAAGGGCTTGTCTCTCAGTCCTAATCTCGAAATCACGATCGATGAGGA ATCTCCAAACAGTGAGCAACTACTTGAGATTGAGGATGAGGGCAACAGGCTTGAGACTAGCTGTGGTCAGTTATTTGAGA TTGATGGAAGCAAACATGAAAATGGGAGGTATGAAACAACAATAGTTGATAGTAATAGTGGAGAATCTCAAGGAAAAGAG TACCCTCCACCAGTTGTGGGAATGGAATTTGATACTTATGATGATGCCTACAACTATTACAATAGCTATGCCAAGGAAAC TGGATTTGGCATTCGGGTTAAATCTTCGTGGACCAAACGCCACAGCAAAGAGAAGCGTGGTGCTGTGCTGTGCTGCAACT GTGAAGGTTTCAGAACAATTAAAGAAGCAAATAGCCACAGGAAAGAAACAAGAACTGGCTGTCTAGCAATGATTAGATTG AGATTAGTGGAATCTAACAGGTGGAAGTTGGATGAAGTCAAGCTTGAGCATAATCATTCATTTGATCCTGAGAGAGCACA AAACTCTAAATCACATAAGAGGGTGGAAAGTGGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAGGTACGCACAA TCAAGTTATATCGAATGCCAGTTGTAGATACATCAGGTTATGGGAGCTCAAATTCTAATGAAGGAAGAGGTAGCAACACC ATTAATTTTTCCAGACGTTTGAAACTTAAAAAAGGCGATGCAGAACTTATTTCAAATTACTTCTGCCGCAGTCAACTAAA GAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAATATATTTTGGATTGATTCTAGATCGA GGGCTGCATATAGTTATTTTGGTGACGTGATTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTGGTT GCATTCGTCGGTGTTAACCACCATGGGCAGTCTTTTTTGCTAGGCTGTGGTCTGCTTGCGGATGAGGCATTTGAGACGTA TATTTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGACCTCCACAGACCATTATTACAAACCAATGTAAGACCA TGCAAAGTGCAATAGCAGAGGTTTTCCCTAGAGCTCACCACAGAATTTCTCTATCACAAGTCATACAGAGCATTCTTGGA TGTTTGGTGCAGTTTCAGGAATATGAGGTATTTCAGATGGCACTGACTAAAGTGATATATGACCCCAAAACAGTAGATGA ATTTGAAAGGGCTTGGGATGATCTGACCCAGCGCTTCGGCATAAGAAATCATGAAAAGCTTCAAACCTTGCATGACGAAC GAGAGCATTGGGCTCCAATTTACTCCAAGGACACATTCTTTGCTGGAATTTCTGATTATGAAAAGGGTGAGTGTGTCATT CCCTTTTTCAAGGGTCATGTACATCAGCAAACTACCTTGAAAGATTTTTTTGAGATTTATGAGTTAGTTCTGCAGAAAAA GCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAGAGCTCGAGCCCATTACTGAAGACTAGATGCTACTATGAGTTGC AACTCTCTAAACTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGTTGATGATGCCCACTTGTTTTAACGTC TCAGAAATTCAAACAAATGGGTCTGCAGTGACGTACATGGTAACCGAACACGAAGGGTTAGAATCTTCATCACATGCAAG GCATTTTGAAGTGATGTATGATAAAGCCGGCGCAGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAGGGCTACCTGT GCAGACATGCTTTGTATATCCTTAATTATAATGGTGTGGAGGAAATTCCATGCCAGTATATTTTATCAAGATGGAGGAAG GATTTTAAGAGATTGTATGTACCTCATCTCAGCTCCAATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTT GTACAAACGTGCCATGCAAATTGTTGAAGAAGGGATGATATCCCGAGATCATTATATGGCTTCTTGGCAAGCATTTAGAG AGTCTTTGAATAAGATTCGCCTTGTAGCAGATAAATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0276700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTNGTGCSPNDKGLSLSPNLEITIDEESPNSEQLLEIEDEGNRLETSCGQLFEIDGSKHENGRYETTIVDSNSGESQGKE YPPPVVGMEFDTYDDAYNYYNSYAKETGFGIRVKSSWTKRHSKEKRGAVLCCNCEGFRTIKEANSHRKETRTGCLAMIRL RLVESNRWKLDEVKLEHNHSFDPERAQNSKSHKRVESGAKRKVEPTLDVEVRTIKLYRMPVVDTSGYGSSNSNEGRGSNT INFSRRLKLKKGDAELISNYFCRSQLKNPNFFYVMDLNDDGQLRNIFWIDSRSRAAYSYFGDVIAFDSTYLSNNYEIPLV AFVGVNHHGQSFLLGCGLLADEAFETYIWLFRAWLTCMSGRPPQTIITNQCKTMQSAIAEVFPRAHHRISLSQVIQSILG CLVQFQEYEVFQMALTKVIYDPKTVDEFERAWDDLTQRFGIRNHEKLQTLHDEREHWAPIYSKDTFFAGISDYEKGECVI PFFKGHVHQQTTLKDFFEIYELVLQKKQKTEALDDLESQSSSPLLKTRCYYELQLSKLYTNAIFRKFQDEVLMMPTCFNV SEIQTNGSAVTYMVTEHEGLESSSHARHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRK DFKRLYVPHLSSNNVDISNPVQCFDHLYKRAMQIVEEGMISRDHYMASWQAFRESLNKIRLVADK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31669:SF88
71 704 634 2.2E-215 –
PANTHER
PTHR31669
71 704 634 2.2E-215
IPR031052
Pfam
PF03101
98 182 85 9.2E-24
IPR004330
MobiDBLite
mobidb-lite
179 202 24 - –
Pfam
PF10551
303 394 92 2.6E-27
IPR018289
ProSiteProfiles
PS50966
589 625 37 9.804
IPR007527
SMART
SM00575
600 627 28 9.7E-6
IPR006564

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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