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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0276700 |
Transcript ID | LotjaGi6g1v0276700.7 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein FAR1-RELATED SEQUENCE 6; TAIR: AT1G52520.1 FAR1-related sequence 6; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A151T6B6|A0A151T6B6_CAJCA Protein FAR1-RELATED SEQUENCE 6; Found in the gene: LotjaGi6g1v0276700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59373428..59375431) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACT AATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGT CATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTC AAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCA TTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTG AGGTCATACTTGAACATAACCACATTTTAGGTGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGG AAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGG TAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACAC AGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGG CATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAA TACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAG GCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGT TCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTG TTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCAC TTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTT AGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGG TGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGG AGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCA AGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCA ATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCA AGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTT CGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGA AGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTA GCGCTGATGATACTGACCCTATTCAATGGTCTAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATT TCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGA CTAA
CDS sequence (LotjaGi6g1v0276700.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACT AATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGT CATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTC AAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCA TTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTG AGGTCATACTTGAACATAACCACATTTTAGGTGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGG AAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGG TAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACAC AGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGG CATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAA TACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAG GCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGT TCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTG TTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCAC TTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTT AGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGG TGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGG AGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCA AGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCA ATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCA AGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTT CGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGA AGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTA GCGCTGATGATACTGACCCTATTCAATGGTCTAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATT TCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGA CTAA
Protein sequence (LotjaGi6g1v0276700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETSLCCEDLPHGECIEVHKDEDAALIELDSQNGFSEGRKEFDAPAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWF KRNSREKYGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHILGAKIHKSAKKMGNGTKR KSLPSSDSEVQTVKLYRPLVIDAGGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEG HLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWVTCMSGC SPQTIITDRCEALQSAIIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIKAVYETLKISEFEAAWGIMIQRFGV SDHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGESIGPFFGRYVHKQTPLKEFLDKYELALHKKHKEESLADTESRNS SPVLKTRCSLELQLSRMYTREIFMKFQFEVEEMFSCFGTTQLHVDGPIVIYLVKERVLIDGNRREIKDFEVVYSRAAGEL RCICSCFNFYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHVPDHSSVSADDTDPIQWSNQLFSSALQVVEEGTI SLDHYNVALQACEESLSKVHDVDQRQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 36 | 666 | 631 | 1.5E-265 | – | |
PANTHER | 36 | 666 | 631 | 1.5E-265 | ||
Pfam | 60 | 143 | 84 | 7.8E-22 | ||
Pfam | 262 | 355 | 94 | 2.3E-28 | ||
Pfam | 537 | 581 | 45 | 2.0E-4 | ||
ProSiteProfiles | 549 | 585 | 37 | 9.606 | ||
SMART | 560 | 587 | 28 | 3.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0276700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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