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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0280400 |
Transcript ID | LotjaGi6g1v0280400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-related protein; TAIR: AT4G17170.1 RAB GTPase homolog B1C; Swiss-Prot: sp|P92963|RAB1C_ARATH Ras-related protein RABB1c; TrEMBL-Plants: tr|A0A0B2Q350|A0A0B2Q350_GLYSO Ras-related protein RABB1c; Found in the gene: LotjaGi6g1v0280400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59692027..59694934) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTGCAGGAGTTGGAAAATCATGCCTTCTACTTCAATTCACCGACAAGCGCTTTCAACCCGTTCATGACTTGACAAT CGGTGTTGAATTTGGAGCTAGGATGATCACAATTGACAATAAGCCAATCAAGTTGCAAATATGGGATACGGTTAGTTTCG ACCCGTTTCGTAGAGCTTAGCATAAATAGAATTGGTTCAAATTTGGAAATCTGTGAAACTTGCTTGCTGCTGTTTCTTAT TTCTAGGAATTTGCAATTGGTTGTGGGGTGATTGTTTATGTTAGGGCATTTGCAATTGGTTGTGGGTTGATCGTTTATGT TAGCGATTTTTATTGGTTGTTTCATCCTCTATTTAGCTTGTATATGCAACCTGAAAAGTTTTATGTGGTTGAAGATGATA GGGTCCTGTTACCAAGTAGGCACTCTGTAAAGAATTGAGGAAATAAAAAGTACTTTTAATGAAAACTGCTATATCTAATC AGCATTATCAAATAGCGGCCGCTGTAGCGTAGCGGATTTTTTGCTAATCACGACGCCGCTATTGCCCACTATAGCGCACT AGTCGCCGCTAAATAGTGGATTTTTGGCTCACCGCCATGGTCCGCGATCGCGATTTGACAACACTGTTTCTAATTCGTTA GAAACTTAAGAAGCTTTCGTTTTCATTTGATACTTACTCCTTTTGGATCTTTAACGATTTGTGCAGCGCTTGTTAGCATT TATGAAGAAAAGAATACCATGTAATTATTATTCTATGTTGAATTTTTGGCTGATTTTCATACAAAGATTTGTCCTGATAG AAATCATATGATTAATGGGGCTAGGACGGATGGTGTTTGTCATAAGTGTAGTTTGTTCCTGACTTCCGGTAACTTTCATA TCCATACTGCGTTTTTTATTCTTCTTAAGAACATTATGCTGAGCATGGTGTAATCTGTCCCTGTAAGTTTTATCTGTTCT TGCGGGATGATCGATCTCCGTTGTTGAAAACCTAATTAGCTGGGGATGACAGCCTTTATTCATGAATTTATCCAAAATTA AAATTACATTATACATGAGAATAAACTTGAATTTGGAGAGGTTGTATATTTTTCTCAACCCATCTTCTCTAGTGATTATG AGATATGGGTGGAAAGACTTAGCTACTACACGGGTATGGTAGGTAGGAAGTACATGGACAGATGGACTTTGGTGAGCCCT TGAGATACCTTCCATATTTTAAATGGTTAGGGTTTATGAATTCAGTAATTGACAATAATGCGACAATTTTGAACTACCCA TCACAATTATAATCATCGAGCTAAGTGTAATTTGGGTTTGATTTATATTTTTTCAGCTTGGATTGATTTTCCAGATTTCA GTGATGAAAAATGTTCTCCATTAGTTGCTTGAGATGTGAAGTTTTAGGTACTGAGTTTTCTTGTAATATTTCAGGCTGGT CAAGAATCCTTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCACTGCTCGTTTATGATATAACCAGGTA TTCTCAAATTTGAACTTCTAAAATCTTTGTTTGTATCTGATAAGAATTTTTTAGAGAACCGTAGCATAAATCTAGCTGTT GTAGCTGGAGGGCCCAATGCCTTATCACATGGGACTCAACTTGCATACCCCACACCAACATACTTCTGACGTGGGGCTCA ATTTTCATACCCCAAAATTGGACCCTAACAGAATCCTAAAATAAATAATAAAATATCTGTTTTCATATAGAAAGAAGTTA GTTTTTTAAGAGTCCATCTTATTTACAAATCATATTGCATATCCAATTTTATATTTTATATAATCCATCACTTCAAATAT GATTTGTAAATCATTTTAATCAAAATCATTTCATAAATAAGCTGTTTAAATGCAGTTTAAGTGAAATCACTGTTGTGAAT TTTGAGGGAAGGAAGATATGTGATTTTCTAATAAATATCAATATATTTAAAAGAGCATTGAAAAAACAGCATTTGATTAT TTTTATTTACTTAGGAGATACATGCTTTGGAAGAGCATTGAAAGAAAACATGCATTGAATCTTATCCAATTTGATGGGCT ACAGAATGTGCAAAATGCACACATGTTTATGTAATTATGTATGACAGTTATGTGATGATTATTTTATAAATAAAGCAATG AAAATGGTGCTGACCCTTTGTTTACCATAGGAGGGAGACATTTAATCACTTGGCTAGTTGGTTGGAAGATGCAAGGCAGC ACGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGACGGGCTGTAAGCACAGAGGAA GGTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGCTCAGAATGTTGAAGAGGTAAG AAGTCACTCATATAACTTGGGCTTTCTTCGTTTATTATACCACATGCACTCCCGAAACGCAGTTTTCCGACATATCTAGG TACTTAGGCTGAGTATTTTGGAAAGTTATCTATATGGAAGTTTTTATATAACCTACCCTTTTGCAGGCATTCATAAAAAC AGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGGTTCGTATCTTTATTTTTAGCAGAG TCATTCCTTACCTCATCTGTTATATTTCAAATACACTCTGGGTTATTTAATTTCACTCTAACTTATATTTTTAAATCTGT GGATGCATTATGGGGATAATGATTATAAAGTGGAAAACATACTCCTGATTCAAGGAGCAAGAGTTAAGACACTGATAAAA TTTCTATGTTTGCAGTCTTATGGAATTAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTC TGCCTCGGCTGGAGGCTGCTGCAGTTGA
CDS sequence (LotjaGi6g1v0280400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCACAATTGACAATAAGCCAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCCTTCAGATCTATTACAAG GTCTTATTACAGAGGGGCTGCAGGTGCACTGCTCGTTTATGATATAACCAGGAGGGAGACATTTAATCACTTGGCTAGTT GGTTGGAAGATGCAAGGCAGCACGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGA CGGGCTGTAAGCACAGAGGAAGGTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGC TCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAA ATGAGTCTTATGGAATTAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCCTCGGCT GGAGGCTGCTGCAGTTGA
Protein sequence (LotjaGi6g1v0280400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASA GGCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 164 | 164 | 28.058 | – | |
SMART | 1 | 124 | 124 | 7.9E-63 | – | |
PANTHER | 1 | 164 | 164 | 6.3E-95 | – | |
Gene3D | 1 | 137 | 137 | 3.8E-51 | – | |
PANTHER | 1 | 164 | 164 | 6.3E-95 | – | |
TIGRFAM | 2 | 114 | 113 | 2.0E-23 | ||
Pfam | 2 | 122 | 121 | 4.3E-46 | ||
SMART | 2 | 124 | 123 | 8.6E-8 | – | |
PRINTS | 2 | 24 | 23 | 2.3E-24 | – | |
SMART | 2 | 124 | 123 | 9.5E-15 | – | |
SUPERFAMILY | 2 | 133 | 132 | 8.09E-44 | ||
PRINTS | 64 | 77 | 14 | 2.3E-24 | – | |
PRINTS | 99 | 121 | 23 | 2.3E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0280400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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