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LotjaGi6g1v0280400.2

Overview

Field Value
Gene ID LotjaGi6g1v0280400
Transcript ID LotjaGi6g1v0280400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ras-related protein; TAIR: AT4G17170.1 RAB GTPase homolog B1C; Swiss-Prot: sp|P92963|RAB1C_ARATH Ras-related protein RABB1c; TrEMBL-Plants: tr|A0A0B2Q350|A0A0B2Q350_GLYSO Ras-related protein RABB1c; Found in the gene: LotjaGi6g1v0280400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59692027..59694934) extracted from Lotus japonicus Gifu genome v1.2.

GTTGCTGCAGGAGTTGGAAAATCATGCCTTCTACTTCAATTCACCGACAAGCGCTTTCAACCCGTTCATGACTTGACAAT CGGTGTTGAATTTGGAGCTAGGATGATCACAATTGACAATAAGCCAATCAAGTTGCAAATATGGGATACGGTTAGTTTCG ACCCGTTTCGTAGAGCTTAGCATAAATAGAATTGGTTCAAATTTGGAAATCTGTGAAACTTGCTTGCTGCTGTTTCTTAT TTCTAGGAATTTGCAATTGGTTGTGGGGTGATTGTTTATGTTAGGGCATTTGCAATTGGTTGTGGGTTGATCGTTTATGT TAGCGATTTTTATTGGTTGTTTCATCCTCTATTTAGCTTGTATATGCAACCTGAAAAGTTTTATGTGGTTGAAGATGATA GGGTCCTGTTACCAAGTAGGCACTCTGTAAAGAATTGAGGAAATAAAAAGTACTTTTAATGAAAACTGCTATATCTAATC AGCATTATCAAATAGCGGCCGCTGTAGCGTAGCGGATTTTTTGCTAATCACGACGCCGCTATTGCCCACTATAGCGCACT AGTCGCCGCTAAATAGTGGATTTTTGGCTCACCGCCATGGTCCGCGATCGCGATTTGACAACACTGTTTCTAATTCGTTA GAAACTTAAGAAGCTTTCGTTTTCATTTGATACTTACTCCTTTTGGATCTTTAACGATTTGTGCAGCGCTTGTTAGCATT TATGAAGAAAAGAATACCATGTAATTATTATTCTATGTTGAATTTTTGGCTGATTTTCATACAAAGATTTGTCCTGATAG AAATCATATGATTAATGGGGCTAGGACGGATGGTGTTTGTCATAAGTGTAGTTTGTTCCTGACTTCCGGTAACTTTCATA TCCATACTGCGTTTTTTATTCTTCTTAAGAACATTATGCTGAGCATGGTGTAATCTGTCCCTGTAAGTTTTATCTGTTCT TGCGGGATGATCGATCTCCGTTGTTGAAAACCTAATTAGCTGGGGATGACAGCCTTTATTCATGAATTTATCCAAAATTA AAATTACATTATACATGAGAATAAACTTGAATTTGGAGAGGTTGTATATTTTTCTCAACCCATCTTCTCTAGTGATTATG AGATATGGGTGGAAAGACTTAGCTACTACACGGGTATGGTAGGTAGGAAGTACATGGACAGATGGACTTTGGTGAGCCCT TGAGATACCTTCCATATTTTAAATGGTTAGGGTTTATGAATTCAGTAATTGACAATAATGCGACAATTTTGAACTACCCA TCACAATTATAATCATCGAGCTAAGTGTAATTTGGGTTTGATTTATATTTTTTCAGCTTGGATTGATTTTCCAGATTTCA GTGATGAAAAATGTTCTCCATTAGTTGCTTGAGATGTGAAGTTTTAGGTACTGAGTTTTCTTGTAATATTTCAGGCTGGT CAAGAATCCTTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCACTGCTCGTTTATGATATAACCAGGTA TTCTCAAATTTGAACTTCTAAAATCTTTGTTTGTATCTGATAAGAATTTTTTAGAGAACCGTAGCATAAATCTAGCTGTT GTAGCTGGAGGGCCCAATGCCTTATCACATGGGACTCAACTTGCATACCCCACACCAACATACTTCTGACGTGGGGCTCA ATTTTCATACCCCAAAATTGGACCCTAACAGAATCCTAAAATAAATAATAAAATATCTGTTTTCATATAGAAAGAAGTTA GTTTTTTAAGAGTCCATCTTATTTACAAATCATATTGCATATCCAATTTTATATTTTATATAATCCATCACTTCAAATAT GATTTGTAAATCATTTTAATCAAAATCATTTCATAAATAAGCTGTTTAAATGCAGTTTAAGTGAAATCACTGTTGTGAAT TTTGAGGGAAGGAAGATATGTGATTTTCTAATAAATATCAATATATTTAAAAGAGCATTGAAAAAACAGCATTTGATTAT TTTTATTTACTTAGGAGATACATGCTTTGGAAGAGCATTGAAAGAAAACATGCATTGAATCTTATCCAATTTGATGGGCT ACAGAATGTGCAAAATGCACACATGTTTATGTAATTATGTATGACAGTTATGTGATGATTATTTTATAAATAAAGCAATG AAAATGGTGCTGACCCTTTGTTTACCATAGGAGGGAGACATTTAATCACTTGGCTAGTTGGTTGGAAGATGCAAGGCAGC ACGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGACGGGCTGTAAGCACAGAGGAA GGTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGCTCAGAATGTTGAAGAGGTAAG AAGTCACTCATATAACTTGGGCTTTCTTCGTTTATTATACCACATGCACTCCCGAAACGCAGTTTTCCGACATATCTAGG TACTTAGGCTGAGTATTTTGGAAAGTTATCTATATGGAAGTTTTTATATAACCTACCCTTTTGCAGGCATTCATAAAAAC AGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGGTTCGTATCTTTATTTTTAGCAGAG TCATTCCTTACCTCATCTGTTATATTTCAAATACACTCTGGGTTATTTAATTTCACTCTAACTTATATTTTTAAATCTGT GGATGCATTATGGGGATAATGATTATAAAGTGGAAAACATACTCCTGATTCAAGGAGCAAGAGTTAAGACACTGATAAAA TTTCTATGTTTGCAGTCTTATGGAATTAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTC TGCCTCGGCTGGAGGCTGCTGCAGTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0280400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCACAATTGACAATAAGCCAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCCTTCAGATCTATTACAAG GTCTTATTACAGAGGGGCTGCAGGTGCACTGCTCGTTTATGATATAACCAGGAGGGAGACATTTAATCACTTGGCTAGTT GGTTGGAAGATGCAAGGCAGCACGCTAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGCGATCTTGCTCACAGA CGGGCTGTAAGCACAGAGGAAGGTGAGCAGTTTGCAAAGGAACATGGATTGATCTTCATGGAGGCTTCAGCTAAAACTGC TCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAA ATGAGTCTTATGGAATTAAAGTAGGATATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCCTCGGCT GGAGGCTGCTGCAGTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0280400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASA GGCCS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51419
1 164 164 28.058 –
SMART
SM00175
1 124 124 7.9E-63 –
PANTHER
PTHR24073
1 164 164 6.3E-95 –
Gene3D
G3DSA:3.40.50.300
1 137 137 3.8E-51 –
PANTHER
PTHR24073:SF992
1 164 164 6.3E-95 –
TIGRFAM
TIGR00231
2 114 113 2.0E-23
IPR005225
Pfam
PF00071
2 122 121 4.3E-46
IPR001806
SMART
SM00174
2 124 123 8.6E-8 –
PRINTS
PR00449
2 24 23 2.3E-24 –
SMART
SM00173
2 124 123 9.5E-15 –
SUPERFAMILY
SSF52540
2 133 132 8.09E-44
IPR027417
PRINTS
PR00449
64 77 14 2.3E-24 –
PRINTS
PR00449
99 121 23 2.3E-24 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0280400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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