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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300400 |
| Transcript ID | LotjaGi6g1v0300400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61806703..61809310) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAAGCAGAAGGAAGCATTCATCTACAAATTCATGAGCTTCGCAGGTTAAGCGAGACGAGCAAATGCAGCACAATGTT CGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAACAGAAA CAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAACTCTC GGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATCACCAT CATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTCCATCT CAGATGATGGAATCAAAAGTTTCAGGTCCAGTTCAAGCTTTCTCTTGCAAAGACTCAAGAGCCTTTGCAGACCTATTGCA GTGATCAGGAAGAAAAGAAGTGAAACGGCGGAGGGTGGTGTTGTAACCCCGAGGTATAGGGATAATGCCACATGTTCTAG GACACCGACTCGCACTTGGATTAGCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCA GCAAGATTCTCTATTGGCTTCAGCTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAAT TATGGAGAGGTTGCTAAAGGAGACACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGC AGAAGCTCTGTTGTTCTTAACTGAGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACC AAGAGTGTGAGTTAGGGCCTTCAGGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGA AGCATATTTGATGGGTTGAAGATGGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCT CATTGGGGCGAGAATTCTTCGCCAATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCA TATCTGTGGTGGAGAGACTAGTTGAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAG ATTTTGTCAGCATTAGCCGGCAAGAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATC TCTTCTCCAGACTAACAGGAGTTCTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTT ATGGTTTCTGGACATTCAACCACTTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATT GGAAACACAAGAGGCCTGCTCCCAAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTAC TCCAACCCAGATTCTGACACTGAAGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGC AACTTAGGAAAGAGATTTCAGAGATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCC TTGTTGCAGAAACTAAGCATAGAGATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGG TGGAGTGCTTAAAGAATTGTTCAATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTG GCCAGGCCCTAGCAATGTTGGCATTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTG GTATTTGCATTGAAAGTTCCGCTGCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGA TTCAGAATGCTTCAACCAGCTTAAGAGGGTTACAGCTGCAGCACCCACAGTAAGTGTTACTCTAACCATTCTAATTATGA GCTACCAGCATTTGAGATTTTTATTATGTGTCTATTCTATCCAACAAAATCACACATGAAAGAAAGAAAAGTTTGATCAA TCTTAAACCATTTACCATGCAGGTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGACTTG CAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGAACTA GCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGATAGA GCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTGGAGG GTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCTAACC ATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
CDS sequence (LotjaGi6g1v0300400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAAC AGAAACAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAA CTCTCGGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATC ACCATCATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTC CATCTCAGATGATGGAATCAAAAGTTTCAGGTATAGGGATAATGCCACATGTTCTAGGACACCGACTCGCACTTGGATTA GCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCAGCAAGATTCTCTATTGGCTTCAG CTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAATTATGGAGAGGTTGCTAAAGGAGA CACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGCAGAAGCTCTGTTGTTCTTAACTG AGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACCAAGAGTGTGAGTTAGGGCCTTCA GGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGAAGCATATTTGATGGGTTGAAGAT GGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCTCATTGGGGCGAGAATTCTTCGCC AATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCATATCTGTGGTGGAGAGACTAGTT GAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAGATTTTGTCAGCATTAGCCGGCAA GAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATCTCTTCTCCAGACTAACAGGAGTT CTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTTATGGTTTCTGGACATTCAACCAC TTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATTGGAAACACAAGAGGCCTGCTCCC AAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTACTCCAACCCAGATTCTGACACTGA AGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGCAACTTAGGAAAGAGATTTCAGAG ATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCCTTGTTGCAGAAACTAAGCATAGA GATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGGTGGAGTGCTTAAAGAATTGTTCA ATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTGGCCAGGCCCTAGCAATGTTGGCA TTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTGGTATTTGCATTGAAAGTTCCGCT GCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGATTCAGAATGCTTCAACCAGCTTA AGAGGGTTACAGCTGCAGCACCCACAGTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGA CTTGCAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGA ACTAGCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGA TAGAGCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTG GAGGGTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCT AACCATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
Protein sequence (LotjaGi6g1v0300400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFEPRGVSIIEKRDSGADNNSLDSPTTETAPEKKLTLFALRLAVLEKAATGLGTLGFIWATVVLLGGFAITLDKTDFWFI TIILLIEGARIFSRSHELEWQHQATWSISDDGIKSFRYRDNATCSRTPTRTWISSDVPLLPYAKWFFLSRNISKILYWLQ LLSATACVVLSSIKLVIHNYGEVAKGDTDKRNRASALNIFYALALAEALLFLTEKAYWEWKISYCELLDEVNQECELGPS GMVSIRRFFYDAYSRCVNGSIFDGLKMDMVCFAMDLLASNSPDEQLIGARILRQFAVSERFSDDTLQKIGISISVVERLV EMLNWDDHKEEEIRLSAAEILSALAGKKQNSLRIAGIPGAMESISSLLQTNRSSIPAADEIGEKKLILDHPSYGFWTFNH LGLLILKKLAHDHDNCWKIGNTRGLLPKIIEFTHAEERLLKNENVTPTQILTLKRSLQLVKMLASTTGANGKQLRKEISE IVFTISNIRDILRHGEKHPLLQKLSIEILTSLALEDEATERIGGTGGVLKELFNIFFRQSIPESQKDVTAVAGQALAMLA LESKSNCHRILKLKVVERLVFALKVPLLRVNAARILRNLCIYSGSDSECFNQLKRVTAAAPTVLQAIMSEENKLQEVMVG LAANVFTFMTSSESRRVFEDSGITEAELANKLVQILKKHKYPPTKVPRIRRFVIELAIWMMKDEAENIQTFTDLGMEEVL EGVLETTSELESFNVFSGTVGLNRHNLTIHSLVETALKLLEDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 13 | 762 | 750 | 0.0 | – | |
| PANTHER | 13 | 762 | 750 | 0.0 | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 48 | 71 | 24 | - | – | |
| Phobius | 72 | 76 | 5 | - | – | |
| Phobius | 77 | 93 | 17 | - | – | |
| Phobius | 94 | 154 | 61 | - | – | |
| Phobius | 155 | 176 | 22 | - | – | |
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 177 | 195 | 19 | - | – | |
| TMHMM | 194 | 213 | 20 | - | – | |
| Phobius | 196 | 213 | 18 | - | – | |
| Phobius | 214 | 763 | 550 | - | – | |
| Gene3D | 266 | 531 | 266 | 3.3E-11 | ||
| SUPERFAMILY | 274 | 727 | 454 | 1.05E-29 | ||
| Gene3D | 532 | 732 | 201 | 3.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0300400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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