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LotjaGi6g1v0336300.1

Overview

Field Value
Gene ID LotjaGi6g1v0336300
Transcript ID LotjaGi6g1v0336300.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:65074048..65079361) extracted from Lotus japonicus Gifu genome v1.2.

TGACCACAATATATATTTGTCTAGATTCTAATTTATATTGGCCTTTTTGTTTTGCTATTGTTGAGTCGAGACCCAGCCCA AATAGAAAATGAAGCTGATCTGAACCAGAGCAAATAAATATCACGACGAAGCAAATTCACCAGAACACTCTCGTTCCGTA CGATCGAAGAATCTCAAATCGCCGGCACCGAACTCCTCCAACACTCATCACTGTCACCACCCATCACTTTCCCGGAAAAT AATCCCAACACTTCTCCTTCAAATCATTTTCTGGTACAATTCACTTCCTACTCTTTTCCCCAATTTGTTTCCCCCTTCTG TAAATAGGGTTTCCATGTTTTTAGTTTTTAATTTTCTGATGGGGAGGATGAAGAATTTTGTAATGTCACTGTGTTGATTT GAATTGTTGACTGTGATTTGCTACCTGCAGATTTGGGATTATGGGGTTCCAGTGTGTGCATTGATGTCATTGTTGTTGAT TGTGATTCGCTAGCTTTGCAGAAATCGAGGGAATGGTATTGGAATTTCTCTCCCTCTCTCTCTCTCTATTCATTGTGATT GGCTAGCTGGCAAAACTTTATTGTGGATGCATTTAGATTTTTAATTTCTAGAAATGCAGTGTGTCATGTATATAGCATGT TGCAAGGTCATTGTTCTGTTACATGAAACTGTTGCTCAACAAACTTATGTGTGTTGATCTTACTTATTTGTTATTTGTGT CGGCGGGAAGTATGGTGTGTTATTAAATAAGGAGTCAGTGATTTTAAGTTTTTTCTGAAGTGAAAGTACTTCAAGTAAAG GGAGCGCGATTCTTCGGTTGAGGGTTTTACCGCATAAATTATGTTTTTTCTGTTTTTCTACTTTTGGAATGTGTGGTAAC CTGGTAACAATGATTTCCAAAGGTTTTGTCAATTTTACCAATTTTGCTCGAAGTATCTGTATGTGAACTGATTGTAGGCT ATTTTGTGCATACTGCATGGATGGGAATGCAGTAACTCCCATATATGTCATGGCAATGATAATGTTGATGATTTTTATCT TTTGATTCATTTGTGTTAAGGCTGCGTCAAAGAAAGTTATCACAAGGGAAGAGTGGGAGAAGAAGCTTAACGATGTGAAA ATTAGGAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCG AAAGGAGTCTGGAACCGAACGTATCCTCTTTTTGCTTTCTGTCTTTTTTTATTTATTATTTTTTGCTTGGTGGTGGGCGT GAGAGCATCTTCTCTGTCAATCTGTGCTTGTCCTTATGGATCTACAGCAGACATAGATCTTGCGACAATCACTGATCGCA TGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCAATCGAAAAAGTGAATGACTTAAATCCTGAGGTGAGC TTCCCATTCCTTTATTTCTTACAACTTCTCATTTCTATGTATCCTTATCTCCTTTACTTTTAGTTCGTATGCAATACACA TAATGCATGCATTGCTCATGAGTGTGATCAATCTAATGCATTAGGTTAATAGGATGTGATATGCCCTTCTTTGAATTGAT TATCTTGCTGTGTCCTACCCAACTATCCTTGCTTGTTTAACACCATATTCTTACTAGGATAACATCATAAGTATATCACT ATCATCTACGATGGCAATGTGACCTGCATAAAAATACTGTTATTGTGCTCAATTATATTCTTTACTTCACTCCTAGATTT TTTTTCTTTTTATTGTTCTTCTGATTTTTTATTTTATTTCTTATGTTCCACATTTTTTCAATGAATTTTTTCCCTGGGGT CAGTTTGGTATCCTAATGGATTAGGTTTTTATGAAAACTTGTATGGCATAACAATCTTTTCATTTATATCTTGCCTTTCT TGTATTTGCTACTTTTGTTTGCTATATTTTTAAAAGCATTGCAAACCAAGCATCACAAACTAAACATTTTCGTTCTCATA AGAACATTCATCCATCATCATCTTGTGCATCTGTTCTACAAACTTACATATTTCCTGTATAATACTCTATGCAGATACTG GATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATTGATAGAACTAATCCGAAATGGAAAAGTAGAGGAAGC TCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAAATGTAAATCTCATCAAGTGAATTTTGCATATCTTTG ATCACCTGTAGCTAGGATAGGAAAACTACAGAATAGGAAAATCAATTGTTGTAGTGTGAAACTTTTTGTAATTGGCTGCA CAATCCTGGTGCTAACACTTGCTTTAAATTTGGATTCCAGCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGC TTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCGAGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTG AATGCGGCCATACTTACTAGCCAGAGCCATGAAAAAGGTTTGTGTTTTCTGCAAAACTCTGCTTAGTTTATATAATTTGG GTATGTGAGCCTGGTTATAAATCTGACTTGGCTATTTAATTTATCTGATTAGTGTGTGTAATTTATATGCATTGCTTGTG ATTGGTAAATAATGTCTGCTGAATAGCTACTGTTTTGTTGTAACTTGTAAAATTTGTGAACATAATAGAAGCATTCCAAA TTCTCCCAATAAAACAATCACTGTTTTGGTTGTACGCATGAACCAAATCTGATGATATATGCCCAAAAAGATGGATTCAA CCTTGTAGTGCTTGAAAGTGGTTAACTATCTCACATTATGCTTGCTTTCTCGAATCGATTCAAGGGAATATTGAGATGAC CAAGTGTTCATAACTTCACATACTAGGACCAACCATTTTGTAGCTTGTGGATGTCAAACATTATGTTTATATGTGCTTTA TGTCTTCCCTCTGCACTCTTAGGAAATACTTGGCTTGAATTTCTAGGAATGGTCAGCGGTGTTCGACTAGTGCAATTGAA TTAGAATCCACTAGAGATGAATATCAACTGGAAAATCTTCTTATTTTGTTTATAGTTTTATTATAGTATATTTATTTATT TATTTTCTTGAAAGTTATATACATTAATTTGGAGTATTTTGGAAACCACTTTTTTTAATGCTTAGCACGAGGATAATGCT GACTTCAAAATATTGTATGCATGTATGAATCCTTGAGTGTCTTGGAGTTAGGTTATTTTTCTTTCTATTTCTATGTCTAA TTTGTTTTAATTTTCTGTTAAGATGGTTTGTTGTTTGACTTGTTTCTGAAATGTTGAAAGAACTTCCATTTACTCTGCAA TGTTTTATTATCCTTCGAATTTGTTAATGATACGCTCCAGAGTTTGGTAGCACTGATTTTTTTTGTTTTCTTTTTTGCAT TAGACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCAC ATAAATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGAATACTCATGAAGCTTCAATTTCAATTTGGAGCTGT TAGGATCTAGATGAAGATATTGCTGTCATTGGCATTTAAAATTGTGTATTGGTTCAATGGGAAAGATATTTATTAACATT TATGTCCATTTTCCCCGAGATAGCTTTTCCAGATATTTTTATACCATTGTACAAAGAGTTTCGGTACAGTCATAAATTAT TTTCTTCAGTTACAAATTGTTAATGTGTTTTGTTGCGCGTTAAGGTTTTTGGCGATGTCAATAAAAGTTGGCCCCATCAG GCCTCTGTCACTCTTATTAATGAAACAGTGCTCTGGTAGTCTGGTAAAAAAAGGTGAAGAAAACGCGTGCCTGCTTACCC CAGAGAACACGTTCCTTCCAAACATTGTCAGTACAATTATTTAGAGAAATGTTACTGTTTCTCTTTGTACTCTGATAGAC ATAGATGAAGAATATAAACTGAGAATTCTGCAGGATTGTGCTGTTTTCCTTTGCAACTCTTTTCTGGGAAATTAAACATT CATGTAAAAGTTACAAATTATGTAAAATGGTTTGTTTTATCAAGCAACAATTCAGTAAACTAACAAGATTTCCAACTTTT GATAGAAGTGGAGGATGTACAGTACAGGAACATAAAGGGTGTGAACAAGATCCTAGAAAAACTCTGCAAAGCTGTTCTTA ACCTTGGAATCAAGAAGCATTCAAAAGAACATAAATACCAAATTTAACATGAGAAAACAAAAGTCACTTGGTTTTGATCC AAAGAACATAAATCCAGGTTGTGTTGTTGATGTCTTTGAGCTCCTGGACTCTGAAATCACCAGCGAATTTCTTTGTAGCA TCTACATGATGATGGCAACAGCCCTCATCAAAGTTGAGGGCATAGCTTGAAGGATCATATTGGAACTTGAGCTGGTTCTT TCCTCCACCATTCTTCAAAGCCTTTTTTATTGCAGCCCTCATCCTCCAAAACAAGCTTCTGCAACGCTTCTTGCCATAAG CATTCACCCATTCCAAATGCTGCAACAGACCCATGTTCAACTTCACCCAAAAAGAGATTGCTTGAGGGAATGAAGGAATT TTGCTCTAGCTAACACAATAACCAGGTGGAAAGGGTGAATATTTATAATAGGAATGGCAGAAGAGACAGGGTAGTATTAG CTAGCAATAGCAACTAGCATCATCGTCTTTTCATAACTTTGTAGTCACAAGTCAGGGACGGAGAGAACAGTATTGAGGGT GTGGGAATGCTGGAAAAGGGTTGAAACTTTAGGTGATGGGGTTGGAGAGGAAGAAACACTGAAATAGAAAGTGAAATCTA TCTTTTTGGTGTTTCAAAGAAGCTTGGTTTGGTGGTGCATATATCTATAGAGAGTGACGTTGGGATGCTAAAATTCCATC CTATGCTTCCTATTAGATTGAGGGTTGATTAATAGTATTAGAGAAGAGAATACAAGTGGGGTTGTTTTGGGCAGAGAGCC TCAAAGTCTAATAAGGTCGTATCACTATCATATCAGGAATCAGAAAATTGAATTCCGAATGTTGTTGTGATTGACAGAAT AACGAGAATTTCATTTCAGTATAATAAATCCCTACTTCCCTTATTTTCTCTACTAAAACCATTTTCTCTCAAATTGCTTG ATTCTAGGGGATTACCTTTGCAATTGCTTGATGATCACCTAAAAGTATCACAACTAGTGATTAATTACTTTGAAAATGTT AATAAAATAATTTAATCAATTGTGATCCTTATTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0336300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCGTCAAAGAAAGTTATCACAAGGGAAGAGTGGGAGAAGAAGCTTAACGATGTGAAAATTAGGAAAGAAGACAT GAATAAATTGGTAATGAATTTCCTTGTCACTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCGAAAGGAGTCTGGAACCG AACCAGACATAGATCTTGCGACAATCACTGATCGCATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCA ATCGAAAAAGTGAATGACTTAAATCCTGAGATACTGGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATT GATAGAACTAATCCGAAATGGAAAAGTAGAGGAAGCTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAA ATCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCGAG CTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAAGA CCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCACATAA ATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0336300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAASKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDA IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPAV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12864:SF52
1 226 226 2.1E-131 –
PANTHER
PTHR12864
1 226 226 2.1E-131 –
Coils
Coil
10 30 21 - –
ProSiteProfiles
PS50896
23 55 33 11.777
IPR006594
SMART
SM00667
23 55 33 1.2E-8
IPR006594
Pfam
PF08513
25 51 27 1.9E-9
IPR006594
SMART
SM00668
61 118 58 5.1E-18
IPR006595
ProSiteProfiles
PS50897
61 118 58 15.045
IPR006595
Pfam
PF10607
62 204 143 2.6E-37
IPR024964
SMART
SM00757
114 210 97 1.4E-31
IPR013144

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0336300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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