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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0336300 |
| Transcript ID | LotjaGi6g1v0336300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65075013..65077612) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATACTGCATGGATGGGAATGCAGTAACTCCCATATATGTCATGGCAATGATAATGTTGATGATTTTTATCTTTTGA TTCATTTGTGTTAAGGCTGCGTCAAAGAAAGTTATCACAAGGGAAGAGTGGGAGAAGAAGCTTAACGATGTGAAAATTAG GAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCGAAAGG AGTCTGGAACCGAACGTATCCTCTTTTTGCTTTCTGTCTTTTTTTATTTATTATTTTTTGCTTGGTGGTGGGCGTGAGAG CATCTTCTCTGTCAATCTGTGCTTGTCCTTATGGATCTACAGCAGACATAGATCTTGCGACAATCACTGATCGCATGGCT GTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCAATCGAAAAAGTGAATGACTTAAATCCTGAGGTGAGCTTCCC ATTCCTTTATTTCTTACAACTTCTCATTTCTATGTATCCTTATCTCCTTTACTTTTAGTTCGTATGCAATACACATAATG CATGCATTGCTCATGAGTGTGATCAATCTAATGCATTAGGTTAATAGGATGTGATATGCCCTTCTTTGAATTGATTATCT TGCTGTGTCCTACCCAACTATCCTTGCTTGTTTAACACCATATTCTTACTAGGATAACATCATAAGTATATCACTATCAT CTACGATGGCAATGTGACCTGCATAAAAATACTGTTATTGTGCTCAATTATATTCTTTACTTCACTCCTAGATTTTTTTT CTTTTTATTGTTCTTCTGATTTTTTATTTTATTTCTTATGTTCCACATTTTTTCAATGAATTTTTTCCCTGGGGTCAGTT TGGTATCCTAATGGATTAGGTTTTTATGAAAACTTGTATGGCATAACAATCTTTTCATTTATATCTTGCCTTTCTTGTAT TTGCTACTTTTGTTTGCTATATTTTTAAAAGCATTGCAAACCAAGCATCACAAACTAAACATTTTCGTTCTCATAAGAAC ATTCATCCATCATCATCTTGTGCATCTGTTCTACAAACTTACATATTTCCTGTATAATACTCTATGCAGATACTGGATAC AAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATTGATAGAACTAATCCGAAATGGAAAAGTAGAGGAAGCTCTAG AGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAAATGTAAATCTCATCAAGTGAATTTTGCATATCTTTGATCAC CTGTAGCTAGGATAGGAAAACTACAGAATAGGAAAATCAATTGTTGTAGTGTGAAACTTTTTGTAATTGGCTGCACAATC CTGGTGCTAACACTTGCTTTAAATTTGGATTCCAGCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGCTTGCC TTTGAAGATGTCTCTAACTGTCCTGTTGGCGAGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGC GGCCATACTTACTAGCCAGAGCCATGAAAAAGGTTTGTGTTTTCTGCAAAACTCTGCTTAGTTTATATAATTTGGGTATG TGAGCCTGGTTATAAATCTGACTTGGCTATTTAATTTATCTGATTAGTGTGTGTAATTTATATGCATTGCTTGTGATTGG TAAATAATGTCTGCTGAATAGCTACTGTTTTGTTGTAACTTGTAAAATTTGTGAACATAATAGAAGCATTCCAAATTCTC CCAATAAAACAATCACTGTTTTGGTTGTACGCATGAACCAAATCTGATGATATATGCCCAAAAAGATGGATTCAACCTTG TAGTGCTTGAAAGTGGTTAACTATCTCACATTATGCTTGCTTTCTCGAATCGATTCAAGGGAATATTGAGATGACCAAGT GTTCATAACTTCACATACTAGGACCAACCATTTTGTAGCTTGTGGATGTCAAACATTATGTTTATATGTGCTTTATGTCT TCCCTCTGCACTCTTAGGAAATACTTGGCTTGAATTTCTAGGAATGGTCAGCGGTGTTCGACTAGTGCAATTGAATTAGA ATCCACTAGAGATGAATATCAACTGGAAAATCTTCTTATTTTGTTTATAGTTTTATTATAGTATATTTATTTATTTATTT TCTTGAAAGTTATATACATTAATTTGGAGTATTTTGGAAACCACTTTTTTTAATGCTTAGCACGAGGATAATGCTGACTT CAAAATATTGTATGCATGTATGAATCCTTGAGTGTCTTGGAGTTAGGTTATTTTTCTTTCTATTTCTATGTCTAATTTGT TTTAATTTTCTGTTAAGATGGTTTGTTGTTTGACTTGTTTCTGAAATGTTGAAAGAACTTCCATTTACTCTGCAATGTTT TATTATCCTTCGAATTTGTTAATGATACGCTCCAGAGTTTGGTAGCACTGATTTTTTTTGTTTTCTTTTTTGCATTAGAC CCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCACATAAA TGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
CDS sequence (LotjaGi6g1v0336300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAATTGGTAATGAATTTCCTTGTCACTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCGAAAGGAGTCTGGAAC CGAACCAGACATAGATCTTGCGACAATCACTGATCGCATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATG CAATCGAAAAAGTGAATGACTTAAATCCTGAGATACTGGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGA TTGATAGAACTAATCCGAAATGGAAAAGTAGAGGAAGCTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGA AAATCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCG AGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAA GACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCACAT AAATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
Protein sequence (LotjaGi6g1v0336300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKLVMNFLVTEGYVEAAEKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR LIELIRNGKVEEALEFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEK DPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 200 | 200 | 1.7E-116 | – | |
| PANTHER | 1 | 200 | 200 | 1.7E-116 | – | |
| Pfam | 1 | 25 | 25 | 1.4E-8 | ||
| SMART | 1 | 29 | 29 | 9.6E-4 | ||
| ProSiteProfiles | 2 | 29 | 28 | 9.15 | ||
| ProSiteProfiles | 35 | 92 | 58 | 15.045 | ||
| SMART | 35 | 92 | 58 | 5.1E-18 | ||
| Pfam | 36 | 178 | 143 | 1.8E-37 | ||
| SMART | 88 | 184 | 97 | 1.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0336300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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