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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0336300 |
Transcript ID | LotjaGi6g1v0336300.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65074814..65077612) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTTTCTGAAGTGAAAGTACTTCAAGTAAAGGGAGCGCGATTCTTCGGTTGAGGGTTTTACCGCATAAATTATGTTT TTTCTGTTTTTCTACTTTTGGAATGTGTGGTAACCTGGTAACAATGATTTCCAAAGGTTTTGTCAATTTTACCAATTTTG CTCGAAGTATCTGTATGTGAACTGATTGTAGGCTATTTTGTGCATACTGCATGGATGGGAATGCAGTAACTCCCATATAT GTCATGGCAATGATAATGTTGATGATTTTTATCTTTTGATTCATTTGTGTTAAGGCTGCGTCAAAGAAAGTTATCACAAG GGAAGAGTGGGAGAAGAAGCTTAACGATGTGAAAATTAGGAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCA CTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCGAAAGGAGTCTGGAACCGAACGTATCCTCTTTTTGCTTTCTGTCTTT TTTTATTTATTATTTTTTGCTTGGTGGTGGGCGTGAGAGCATCTTCTCTGTCAATCTGTGCTTGTCCTTATGGATCTACA GCAGACATAGATCTTGCGACAATCACTGATCGCATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCAAT CGAAAAAGTGAATGACTTAAATCCTGAGGTGAGCTTCCCATTCCTTTATTTCTTACAACTTCTCATTTCTATGTATCCTT ATCTCCTTTACTTTTAGTTCGTATGCAATACACATAATGCATGCATTGCTCATGAGTGTGATCAATCTAATGCATTAGGT TAATAGGATGTGATATGCCCTTCTTTGAATTGATTATCTTGCTGTGTCCTACCCAACTATCCTTGCTTGTTTAACACCAT ATTCTTACTAGGATAACATCATAAGTATATCACTATCATCTACGATGGCAATGTGACCTGCATAAAAATACTGTTATTGT GCTCAATTATATTCTTTACTTCACTCCTAGATTTTTTTTCTTTTTATTGTTCTTCTGATTTTTTATTTTATTTCTTATGT TCCACATTTTTTCAATGAATTTTTTCCCTGGGGTCAGTTTGGTATCCTAATGGATTAGGTTTTTATGAAAACTTGTATGG CATAACAATCTTTTCATTTATATCTTGCCTTTCTTGTATTTGCTACTTTTGTTTGCTATATTTTTAAAAGCATTGCAAAC CAAGCATCACAAACTAAACATTTTCGTTCTCATAAGAACATTCATCCATCATCATCTTGTGCATCTGTTCTACAAACTTA CATATTTCCTGTATAATACTCTATGCAGATACTGGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATTGA TAGAACTAATCCGAAATGGAAAAGTAGAGGAAGCTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAAAT GTAAATCTCATCAAGTGAATTTTGCATATCTTTGATCACCTGTAGCTAGGATAGGAAAACTACAGAATAGGAAAATCAAT TGTTGTAGTGTGAAACTTTTTGTAATTGGCTGCACAATCCTGGTGCTAACACTTGCTTTAAATTTGGATTCCAGCATAGC TTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCGAGCTTCTTGA CATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAAGGTTTGTGTT TTCTGCAAAACTCTGCTTAGTTTATATAATTTGGGTATGTGAGCCTGGTTATAAATCTGACTTGGCTATTTAATTTATCT GATTAGTGTGTGTAATTTATATGCATTGCTTGTGATTGGTAAATAATGTCTGCTGAATAGCTACTGTTTTGTTGTAACTT GTAAAATTTGTGAACATAATAGAAGCATTCCAAATTCTCCCAATAAAACAATCACTGTTTTGGTTGTACGCATGAACCAA ATCTGATGATATATGCCCAAAAAGATGGATTCAACCTTGTAGTGCTTGAAAGTGGTTAACTATCTCACATTATGCTTGCT TTCTCGAATCGATTCAAGGGAATATTGAGATGACCAAGTGTTCATAACTTCACATACTAGGACCAACCATTTTGTAGCTT GTGGATGTCAAACATTATGTTTATATGTGCTTTATGTCTTCCCTCTGCACTCTTAGGAAATACTTGGCTTGAATTTCTAG GAATGGTCAGCGGTGTTCGACTAGTGCAATTGAATTAGAATCCACTAGAGATGAATATCAACTGGAAAATCTTCTTATTT TGTTTATAGTTTTATTATAGTATATTTATTTATTTATTTTCTTGAAAGTTATATACATTAATTTGGAGTATTTTGGAAAC CACTTTTTTTAATGCTTAGCACGAGGATAATGCTGACTTCAAAATATTGTATGCATGTATGAATCCTTGAGTGTCTTGGA GTTAGGTTATTTTTCTTTCTATTTCTATGTCTAATTTGTTTTAATTTTCTGTTAAGATGGTTTGTTGTTTGACTTGTTTC TGAAATGTTGAAAGAACTTCCATTTACTCTGCAATGTTTTATTATCCTTCGAATTTGTTAATGATACGCTCCAGAGTTTG GTAGCACTGATTTTTTTTGTTTTCTTTTTTGCATTAGACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCA AAACCAGCTGGATGAGAAAGCTGCATATCCTCACATAAATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
CDS sequence (LotjaGi6g1v0336300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAATTGGTAATGAATTTCCTTGTCACTGAGGGTTATGTTGAAGCTGCTGAGAAATTCCGAAAGGAGTCTGGAAC CGAACCAGACATAGATCTTGCGACAATCACTGATCGCATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATG CAATCGAAAAAGTGAATGACTTAAATCCTGAGATACTGGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGA TTGATAGAACTAATCCGAAATGGAAAAGTAGAGGAAGCTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGA AAATCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCG AGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAA GACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCACAT AAATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
Protein sequence (LotjaGi6g1v0336300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKLVMNFLVTEGYVEAAEKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR LIELIRNGKVEEALEFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEK DPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 200 | 200 | 1.7E-116 | – | |
PANTHER | 1 | 200 | 200 | 1.7E-116 | – | |
Pfam | 1 | 25 | 25 | 1.4E-8 | ||
SMART | 1 | 29 | 29 | 9.6E-4 | ||
ProSiteProfiles | 2 | 29 | 28 | 9.15 | ||
ProSiteProfiles | 35 | 92 | 58 | 15.045 | ||
SMART | 35 | 92 | 58 | 5.1E-18 | ||
Pfam | 36 | 178 | 143 | 1.8E-37 | ||
SMART | 88 | 184 | 97 | 1.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0336300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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